******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= 12-organelles-nucleus-merged-PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.macs2.0.9_peaks.top500.fasta ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII-NC_003074:8244862 1.0000 100 chrIII-NC_003074:4121906 1.0000 100 chrIII-NC_003074:2060654 1.0000 100 chrIII-NC_003074:763527- 1.0000 100 chrIII-NC_003074:1847014 1.0000 100 chrIII-NC_003074:2058744 1.0000 100 chrIII-NC_003074:9959818 1.0000 100 chrIII-NC_003074:2037912 1.0000 100 chrIII-NC_003074:5247210 1.0000 100 chrIII-NC_003074:5121290 1.0000 100 chrIII-NC_003074:7211460 1.0000 100 chrIII-NC_003074:3366458 1.0000 100 chrIII-NC_003074:2295423 1.0000 100 chrIII-NC_003074:7397124 1.0000 100 chrIII-NC_003074:1315461 1.0000 100 chrIII-NC_003074:2058849 1.0000 100 chrIII-NC_003074:2232387 1.0000 100 chrIII-NC_003074:1928100 1.0000 100 chrIII-NC_003074:2267043 1.0000 100 chrIII-NC_003074:2137197 1.0000 100 chrIII-NC_003074:4606048 1.0000 100 chrIII-NC_003074:1916823 1.0000 100 chrIII-NC_003074:2263425 1.0000 100 chrIII-NC_003074:4829216 1.0000 100 chrIII-NC_003074:5293166 1.0000 100 chrIII-NC_003074:467781- 1.0000 100 chrIII-NC_003074:7989294 1.0000 100 chrIII-NC_003074:2114488 1.0000 100 chrIII-NC_003074:5109721 1.0000 100 chrIII-NC_003074:4402902 1.0000 100 chrIII-NC_003074:9812872 1.0000 100 chrIII-NC_003074:1791000 1.0000 100 chrIII-NC_003074:1216726 1.0000 100 chrIII-NC_003074:2117737 1.0000 100 chrIII-NC_003074:2329158 1.0000 100 chrIII-NC_003074:2058364 1.0000 100 chrIII-NC_003074:7789683 1.0000 100 chrIII-NC_003074:1797331 1.0000 100 chrIII-NC_003074:2315534 1.0000 100 chrIII-NC_003074:7297913 1.0000 100 chrIII-NC_003074:2345891 1.0000 100 chrIII-NC_003074:2006936 1.0000 100 chrIII-NC_003074:2058578 1.0000 100 chrIII-NC_003074:7507408 1.0000 100 chrIII-NC_003074:1086707 1.0000 100 chrIII-NC_003074:2336099 1.0000 100 chrIII-NC_003074:1373635 1.0000 100 chrIII-NC_003074:2274117 1.0000 100 chrIII-NC_003074:8238743 1.0000 100 chrIII-NC_003074:9969304 1.0000 100 chrIII-NC_003074:5920270 1.0000 100 chrIII-NC_003074:6158020 1.0000 100 chrIII-NC_003074:2148924 1.0000 100 chrIII-NC_003074:8325701 1.0000 100 chrIII-NC_003074:2293953 1.0000 100 chrIII-NC_003074:1136472 1.0000 100 chrIII-NC_003074:2441566 1.0000 100 chrIII-NC_003074:2123354 1.0000 100 chrIII-NC_003074:7997237 1.0000 100 chrIII-NC_003074:1880983 1.0000 100 chrIII-NC_003074:5299080 1.0000 100 chrIII-NC_003074:5222133 1.0000 100 chrIII-NC_003074:2012117 1.0000 100 chrIII-NC_003074:2073939 1.0000 100 chrIII-NC_003074:5954468 1.0000 100 chrIII-NC_003074:6515592 1.0000 100 chrIII-NC_003074:6780452 1.0000 100 chrIII-NC_003074:2048555 1.0000 100 chrIII-NC_003074:4161767 1.0000 100 chrIII-NC_003074:3098128 1.0000 100 chrIII-NC_003074:2232815 1.0000 100 chrIII-NC_003074:2173213 1.0000 100 chrIII-NC_003074:2242616 1.0000 100 chrIII-NC_003074:1803827 1.0000 100 chrIII-NC_003074:4146195 1.0000 100 chrIII-NC_003074:2114159 1.0000 100 chrIII-NC_003074:6250572 1.0000 100 chrIII-NC_003074:5236746 1.0000 100 chrIII-NC_003074:4732994 1.0000 100 chrII-NC_003071:11925629 1.0000 100 chrII-NC_003071:15499356 1.0000 100 chrII-NC_003071:13280749 1.0000 100 chrII-NC_003071:17811215 1.0000 100 chrII-NC_003071:18801878 1.0000 100 chrII-NC_003071:14339779 1.0000 100 chrII-NC_003071:17584835 1.0000 100 chrII-NC_003071:17819844 1.0000 100 chrII-NC_003071:14733361 1.0000 100 chrII-NC_003071:18114690 1.0000 100 chrII-NC_003071:7940337- 1.0000 100 chrII-NC_003071:17446382 1.0000 100 chrII-NC_003071:19298962 1.0000 100 chrII-NC_003071:14735538 1.0000 100 chrII-NC_003071:9577581- 1.0000 100 chrII-NC_003071:15784393 1.0000 100 chrII-NC_003071:893522-8 1.0000 100 chrII-NC_003071:11771593 1.0000 100 chrII-NC_003071:8430434- 1.0000 100 chrII-NC_003071:14194627 1.0000 100 chrII-NC_003071:18635619 1.0000 100 chrII-NC_003071:8340177- 1.0000 100 chrII-NC_003071:432261-4 1.0000 100 chrII-NC_003071:16559073 1.0000 100 chrII-NC_003071:15206977 1.0000 100 chrII-NC_003071:16641452 1.0000 100 chrII-NC_003071:19013765 1.0000 100 chrII-NC_003071:15099969 1.0000 100 chrII-NC_003071:12774547 1.0000 100 chrII-NC_003071:17743078 1.0000 100 chrII-NC_003071:18811109 1.0000 100 chrII-NC_003071:18809221 1.0000 100 chrII-NC_003071:13275315 1.0000 100 chrII-NC_003071:9580157- 1.0000 100 chrII-NC_003071:15690357 1.0000 100 chrII-NC_003071:9037903- 1.0000 100 chrII-NC_003071:9523112- 1.0000 100 chrII-NC_003071:18813111 1.0000 100 chrII-NC_003071:18609166 1.0000 100 chrII-NC_003071:14645113 1.0000 100 chrII-NC_003071:999336-9 1.0000 100 chrII-NC_003071:16221745 1.0000 100 chrII-NC_003071:17809800 1.0000 100 chrII-NC_003071:436677-4 1.0000 100 chrII-NC_003071:19071050 1.0000 100 chrII-NC_003071:16127692 1.0000 100 chrII-NC_003071:1136739- 1.0000 100 chrII-NC_003071:507658-5 1.0000 100 chrII-NC_003071:18414202 1.0000 100 chrII-NC_003071:383333-3 1.0000 100 chrII-NC_003071:14343671 1.0000 100 chrII-NC_003071:519724-5 1.0000 100 chrII-NC_003071:13276569 1.0000 100 chrII-NC_003071:17808033 1.0000 100 chrII-NC_003071:14956317 1.0000 100 chrII-NC_003071:17791516 1.0000 100 chrII-NC_003071:17240934 1.0000 100 chrII-NC_003071:10191589 1.0000 100 chrII-NC_003071:15275171 1.0000 100 chrII-NC_003071:12941145 1.0000 100 chrII-NC_003071:15009657 1.0000 100 chrII-NC_003071:12002503 1.0000 100 chrII-NC_003071:14224191 1.0000 100 chrII-NC_003071:435556-4 1.0000 100 chrII-NC_003071:14331359 1.0000 100 chrII-NC_003071:8692385- 1.0000 100 chrII-NC_003071:14984539 1.0000 100 chrII-NC_003071:11871421 1.0000 100 chrII-NC_003071:18714673 1.0000 100 chrII-NC_003071:18922556 1.0000 100 chrII-NC_003071:16504451 1.0000 100 chrII-NC_003071:14485962 1.0000 100 chrII-NC_003071:14209292 1.0000 100 chrII-NC_003071:19198253 1.0000 100 chrII-NC_003071:16506905 1.0000 100 chrII-NC_003071:18423065 1.0000 100 chrI-NC_003070:30187300- 1.0000 100 chrI-NC_003070:7663868-7 1.0000 100 chrI-NC_003070:11446219- 1.0000 100 chrI-NC_003070:8305339-8 1.0000 100 chrI-NC_003070:17424563- 1.0000 100 chrI-NC_003070:26476526- 1.0000 100 chrI-NC_003070:10000490- 1.0000 100 chrI-NC_003070:23267188- 1.0000 100 chrI-NC_003070:27947367- 1.0000 100 chrI-NC_003070:27977232- 1.0000 100 chrI-NC_003070:9950825-9 1.0000 100 chrI-NC_003070:11621892- 1.0000 100 chrI-NC_003070:11061463- 1.0000 100 chrI-NC_003070:20762967- 1.0000 100 chrI-NC_003070:8595088-8 1.0000 100 chrI-NC_003070:19762335- 1.0000 100 chrI-NC_003070:8719417-8 1.0000 100 chrI-NC_003070:23061517- 1.0000 100 chrI-NC_003070:25682284- 1.0000 100 chrI-NC_003070:10693148- 1.0000 100 chrI-NC_003070:10228768- 1.0000 100 chrI-NC_003070:8983930-8 1.0000 100 chrI-NC_003070:8839918-8 1.0000 100 chrI-NC_003070:1469218-1 1.0000 100 chrI-NC_003070:3287515-3 1.0000 100 chrI-NC_003070:6579466-6 1.0000 100 chrI-NC_003070:20186963- 1.0000 100 chrI-NC_003070:28189210- 1.0000 100 chrI-NC_003070:8852838-8 1.0000 100 chrI-NC_003070:10726311- 1.0000 100 chrI-NC_003070:25226425- 1.0000 100 chrI-NC_003070:26516887- 1.0000 100 chrI-NC_003070:28358380- 1.0000 100 chrI-NC_003070:6837297-6 1.0000 100 chrI-NC_003070:26059448- 1.0000 100 chrI-NC_003070:21192322- 1.0000 100 chrI-NC_003070:8598762-8 1.0000 100 chrI-NC_003070:20954134- 1.0000 100 chrI-NC_003070:7142957-7 1.0000 100 chrI-NC_003070:4706360-4 1.0000 100 chrI-NC_003070:7384592-7 1.0000 100 chrI-NC_003070:20566078- 1.0000 100 chrI-NC_003070:1845386-1 1.0000 100 chrI-NC_003070:18360493- 1.0000 100 chrI-NC_003070:8717829-8 1.0000 100 chrI-NC_003070:1188280-1 1.0000 100 chrI-NC_003070:567094-56 1.0000 100 chrI-NC_003070:28122998- 1.0000 100 chrI-NC_003070:3571887-3 1.0000 100 chrI-NC_003070:11067773- 1.0000 100 chrI-NC_003070:22387821- 1.0000 100 chrI-NC_003070:4708486-4 1.0000 100 chrI-NC_003070:5513978-5 1.0000 100 chrI-NC_003070:6400339-6 1.0000 100 chrI-NC_003070:9990630-9 1.0000 100 chrI-NC_003070:4904674-4 1.0000 100 chrI-NC_003070:54911-550 1.0000 100 chrI-NC_003070:772515-77 1.0000 100 chrI-NC_003070:28117313- 1.0000 100 chrI-NC_003070:26575417- 1.0000 100 chrI-NC_003070:25986065- 1.0000 100 chrI-NC_003070:25022250- 1.0000 100 chrI-NC_003070:6459718-6 1.0000 100 chrI-NC_003070:26654751- 1.0000 100 chrI-NC_003070:20723351- 1.0000 100 chrI-NC_003070:26011675- 1.0000 100 chrI-NC_003070:11033867- 1.0000 100 chrI-NC_003070:10353964- 1.0000 100 chrI-NC_003070:9264427-9 1.0000 100 chrI-NC_003070:29764290- 1.0000 100 chrI-NC_003070:20445957- 1.0000 100 chrI-NC_003070:25681126- 1.0000 100 chrI-NC_003070:6843352-6 1.0000 100 chrI-NC_003070:11628844- 1.0000 100 chrI-NC_003070:11373372- 1.0000 100 chrI-NC_003070:28673890- 1.0000 100 chrI-NC_003070:553810-55 1.0000 100 chrI-NC_003070:8075698-8 1.0000 100 chrI-NC_003070:12455681- 1.0000 100 chrI-NC_003070:25988851- 1.0000 100 chrI-NC_003070:7930462-7 1.0000 100 chrI-NC_003070:20956381- 1.0000 100 chrI-NC_003070:10679066- 1.0000 100 chrI-NC_003070:29744031- 1.0000 100 chrI-NC_003070:10802104- 1.0000 100 chrI-NC_003070:7515017-7 1.0000 100 chrI-NC_003070:3101296-3 1.0000 100 chrI-NC_003070:4600560-4 1.0000 100 chrI-NC_003070:18690442- 1.0000 100 chrI-NC_003070:4549734-4 1.0000 100 chrI-NC_003070:27363804- 1.0000 100 chrI-NC_003070:24034269- 1.0000 100 chrI-NC_003070:25046712- 1.0000 100 chrI-NC_003070:8727068-8 1.0000 100 chrI-NC_003070:22936883- 1.0000 100 chrI-NC_003070:13228453- 1.0000 100 chrI-NC_003070:10978109- 1.0000 100 chrI-NC_003070:9267178-9 1.0000 100 chrI-NC_003070:9778055-9 1.0000 100 chrI-NC_003070:5086108-5 1.0000 100 chrI-NC_003070:9101220-9 1.0000 100 chrI-NC_003070:29755743- 1.0000 100 chrI-NC_003070:25228955- 1.0000 100 chrI-NC_003070:26727714- 1.0000 100 chrI-NC_003070:1714035-1 1.0000 100 chrI-NC_003070:28183872- 1.0000 100 chrI-NC_003070:4231438-4 1.0000 100 chrI-NC_003070:10566054- 1.0000 100 chrI-NC_003070:25391261- 1.0000 100 chrI-NC_003070:2120839-2 1.0000 100 chrI-NC_003070:6844883-6 1.0000 100 chrI-NC_003070:10795059- 1.0000 100 chrI-NC_003070:27713510- 1.0000 100 chrI-NC_003070:19848599- 1.0000 100 chrI-NC_003070:25319703- 1.0000 100 chrI-NC_003070:6836757-6 1.0000 100 chrI-NC_003070:3273070-3 1.0000 100 chrI-NC_003070:9269999-9 1.0000 100 chrI-NC_003070:29788413- 1.0000 100 chrI-NC_003070:26100224- 1.0000 100 chrI-NC_003070:28236993- 1.0000 100 chrI-NC_003070:17506712- 1.0000 100 chrI-NC_003070:27292918- 1.0000 100 chrI-NC_003070:983778-98 1.0000 100 chrI-NC_003070:28366917- 1.0000 100 chrI-NC_003070:4654774-4 1.0000 100 chrI-NC_003070:29216786- 1.0000 100 chrI-NC_003070:5851705-5 1.0000 100 chrI-NC_003070:5443879-5 1.0000 100 chrI-NC_003070:23075622- 1.0000 100 chrI-NC_003070:9696429-9 1.0000 100 chrI-NC_003070:22814110- 1.0000 100 chrI-NC_003070:5004165-5 1.0000 100 chrI-NC_003070:27042789- 1.0000 100 chrI-NC_003070:27484286- 1.0000 100 chrI-NC_003070:27596186- 1.0000 100 chrI-NC_003070:18399009- 1.0000 100 chrI-NC_003070:6916711-6 1.0000 100 chrI-NC_003070:28378932- 1.0000 100 chrI-NC_003070:365450-36 1.0000 100 chrI-NC_003070:11630791- 1.0000 100 chrI-NC_003070:8298211-8 1.0000 100 chrI-NC_003070:26581149- 1.0000 100 chrI-NC_003070:2395052-2 1.0000 100 chrI-NC_003070:6174588-6 1.0000 100 chrIV-NC_003075:6794586- 1.0000 100 chrIV-NC_003075:5739029- 1.0000 100 chrIV-NC_003075:18361675 1.0000 100 chrIV-NC_003075:14196781 1.0000 100 chrIV-NC_003075:17585301 1.0000 100 chrIV-NC_003075:17002611 1.0000 100 chrIV-NC_003075:2333685- 1.0000 100 chrIV-NC_003075:9447406- 1.0000 100 chrIV-NC_003075:499163-4 1.0000 100 chrIV-NC_003075:12352297 1.0000 100 chrIV-NC_003075:10381216 1.0000 100 chrIV-NC_003075:8444094- 1.0000 100 chrIV-NC_003075:16696229 1.0000 100 chrIV-NC_003075:12043858 1.0000 100 chrIV-NC_003075:15918178 1.0000 100 chrIV-NC_003075:17395836 1.0000 100 chrIV-NC_003075:14813525 1.0000 100 chrIV-NC_003075:13854244 1.0000 100 chrIV-NC_003075:10386503 1.0000 100 chrIV-NC_003075:630489-6 1.0000 100 chrIV-NC_003075:16689620 1.0000 100 chrIV-NC_003075:17398887 1.0000 100 chrIV-NC_003075:9420939- 1.0000 100 chrIV-NC_003075:9249999- 1.0000 100 chrIV-NC_003075:13193728 1.0000 100 chrIV-NC_003075:17397905 1.0000 100 chrIV-NC_003075:12084490 1.0000 100 chrIV-NC_003075:13016297 1.0000 100 chrIV-NC_003075:15317369 1.0000 100 chrIV-NC_003075:17322266 1.0000 100 chrIV-NC_003075:14815782 1.0000 100 chrIV-NC_003075:18465895 1.0000 100 chrIV-NC_003075:17782550 1.0000 100 chrIV-NC_003075:12357384 1.0000 100 chrIV-NC_003075:7868922- 1.0000 100 chrIV-NC_003075:8445000- 1.0000 100 chrIV-NC_003075:18318568 1.0000 100 chrIV-NC_003075:10382476 1.0000 100 chrIV-NC_003075:17150895 1.0000 100 chrIV-NC_003075:11995811 1.0000 100 chrIV-NC_003075:17006713 1.0000 100 chrIV-NC_003075:14902719 1.0000 100 chrIV-NC_003075:13987300 1.0000 100 chrIV-NC_003075:9319710- 1.0000 100 chrIV-NC_003075:13013959 1.0000 100 chrIV-NC_003075:14325507 1.0000 100 chrIV-NC_003075:17728041 1.0000 100 chrIV-NC_003075:17432064 1.0000 100 chrIV-NC_003075:13686062 1.0000 100 chrIV-NC_003075:14912987 1.0000 100 chrIV-NC_003075:9257712- 1.0000 100 chrIV-NC_003075:14372870 1.0000 100 chrIV-NC_003075:17408906 1.0000 100 chrIV-NC_003075:17780864 1.0000 100 chrIV-NC_003075:15397206 1.0000 100 chrIV-NC_003075:13381861 1.0000 100 chrIV-NC_003075:11865397 1.0000 100 chrIV-NC_003075:8435496- 1.0000 100 chrIV-NC_003075:16154659 1.0000 100 chrIV-NC_003075:16271041 1.0000 100 chrIV-NC_003075:11604849 1.0000 100 chrIV-NC_003075:15205290 1.0000 100 chrIV-NC_003075:5155510- 1.0000 100 chrIV-NC_003075:17730683 1.0000 100 chrIV-NC_003075:17319872 1.0000 100 chrIV-NC_003075:15054453 1.0000 100 chrIV-NC_003075:12027927 1.0000 100 chrV-NC_003076:23391690- 1.0000 100 chrV-NC_003076:1894217-1 1.0000 100 chrV-NC_003076:21763572- 1.0000 100 chrV-NC_003076:26851845- 1.0000 100 chrV-NC_003076:26723094- 1.0000 100 chrV-NC_003076:17639043- 1.0000 100 chrV-NC_003076:21793629- 1.0000 100 chrV-NC_003076:2839208-2 1.0000 100 chrV-NC_003076:6828965-6 1.0000 100 chrV-NC_003076:536544-53 1.0000 100 chrV-NC_003076:23700558- 1.0000 100 chrV-NC_003076:24509487- 1.0000 100 chrV-NC_003076:566586-56 1.0000 100 chrV-NC_003076:8543303-8 1.0000 100 chrV-NC_003076:20898801- 1.0000 100 chrV-NC_003076:19899324- 1.0000 100 chrV-NC_003076:7695385-7 1.0000 100 chrV-NC_003076:3396241-3 1.0000 100 chrV-NC_003076:1750908-1 1.0000 100 chrV-NC_003076:1855815-1 1.0000 100 chrV-NC_003076:17073608- 1.0000 100 chrV-NC_003076:24505443- 1.0000 100 chrV-NC_003076:3550220-3 1.0000 100 chrV-NC_003076:2533030-2 1.0000 100 chrV-NC_003076:24996114- 1.0000 100 chrV-NC_003076:3771448-3 1.0000 100 chrV-NC_003076:4221058-4 1.0000 100 chrV-NC_003076:17363447- 1.0000 100 chrV-NC_003076:4255028-4 1.0000 100 chrV-NC_003076:8004910-8 1.0000 100 chrV-NC_003076:2840361-2 1.0000 100 chrV-NC_003076:3478453-3 1.0000 100 chrV-NC_003076:24510324- 1.0000 100 chrV-NC_003076:23670284- 1.0000 100 chrV-NC_003076:3515115-3 1.0000 100 chrV-NC_003076:3181982-3 1.0000 100 chrV-NC_003076:2985565-2 1.0000 100 chrV-NC_003076:22997202- 1.0000 100 chrV-NC_003076:1279542-1 1.0000 100 chrV-NC_003076:10455505- 1.0000 100 chrV-NC_003076:4984734-4 1.0000 100 chrV-NC_003076:25505659- 1.0000 100 chrV-NC_003076:7256699-7 1.0000 100 chrV-NC_003076:24993882- 1.0000 100 chrV-NC_003076:24507183- 1.0000 100 chrV-NC_003076:25086917- 1.0000 100 chrV-NC_003076:24843037- 1.0000 100 chrV-NC_003076:26562589- 1.0000 100 chrV-NC_003076:3511361-3 1.0000 100 chrV-NC_003076:15711909- 1.0000 100 chrV-NC_003076:10649957- 1.0000 100 chrV-NC_003076:26659025- 1.0000 100 chrV-NC_003076:26138594- 1.0000 100 chrV-NC_003076:1826857-1 1.0000 100 chrV-NC_003076:18000368- 1.0000 100 chrV-NC_003076:24578717- 1.0000 100 chrV-NC_003076:39060-391 1.0000 100 chrV-NC_003076:20011316- 1.0000 100 chrV-NC_003076:23165445- 1.0000 100 chrV-NC_003076:16337674- 1.0000 100 chrV-NC_003076:1891504-1 1.0000 100 chrV-NC_003076:21154885- 1.0000 100 chrV-NC_003076:4451032-4 1.0000 100 chrV-NC_003076:2856549-2 1.0000 100 chrV-NC_003076:2234877-2 1.0000 100 chrV-NC_003076:19653125- 1.0000 100 chrV-NC_003076:13939328- 1.0000 100 chrV-NC_003076:3833394-3 1.0000 100 chrV-NC_003076:2939835-2 1.0000 100 chrV-NC_003076:2284163-2 1.0000 100 chrV-NC_003076:26042706- 1.0000 100 chrV-NC_003076:16563593- 1.0000 100 chrV-NC_003076:17550113- 1.0000 100 chrV-NC_003076:7174965-7 1.0000 100 chrV-NC_003076:6381170-6 1.0000 100 chrV-NC_003076:23661495- 1.0000 100 chrV-NC_003076:7697587-7 1.0000 100 chrV-NC_003076:6320620-6 1.0000 100 chrV-NC_003076:9629118-9 1.0000 100 chrV-NC_003076:3865681-3 1.0000 100 chrV-NC_003076:26533069- 1.0000 100 chrV-NC_003076:25504492- 1.0000 100 chrV-NC_003076:9799161-9 1.0000 100 chrV-NC_003076:13936253- 1.0000 100 chrV-NC_003076:22388451- 1.0000 100 chrV-NC_003076:2123676-2 1.0000 100 chrV-NC_003076:3508558-3 1.0000 100 chrV-NC_003076:21045187- 1.0000 100 chrV-NC_003076:18947037- 1.0000 100 chrV-NC_003076:3242335-3 1.0000 100 chrV-NC_003076:25908024- 1.0000 100 chrV-NC_003076:17585178- 1.0000 100 chrV-NC_003076:26253392- 1.0000 100 chrV-NC_003076:2841184-2 1.0000 100 chrV-NC_003076:21855079- 1.0000 100 chrV-NC_003076:229782-22 1.0000 100 chrV-NC_003076:26837938- 1.0000 100 chrV-NC_003076:9133297-9 1.0000 100 chrV-NC_003076:23785222- 1.0000 100 chrV-NC_003076:966118-96 1.0000 100 chrV-NC_003076:15871704- 1.0000 100 chrV-NC_003076:19273677- 1.0000 100 chrV-NC_003076:23132831- 1.0000 100 chrV-NC_003076:13937852- 1.0000 100 chrV-NC_003076:26805576- 1.0000 100 chrV-NC_003076:3613569-3 1.0000 100 chrV-NC_003076:5863206-5 1.0000 100 chrV-NC_003076:26765562- 1.0000 100 chrV-NC_003076:26211334- 1.0000 100 chrV-NC_003076:26806816- 1.0000 100 chrV-NC_003076:5227509-5 1.0000 100 chrV-NC_003076:9480415-9 1.0000 100 chrV-NC_003076:8903405-8 1.0000 100 chrV-NC_003076:21669324- 1.0000 100 chrV-NC_003076:7265888-7 1.0000 100 chrV-NC_003076:23147444- 1.0000 100 chrV-NC_003076:23218219- 1.0000 100 chrV-NC_003076:1395582-1 1.0000 100 chrV-NC_003076:2409273-2 1.0000 100 chrV-NC_003076:5616706-5 1.0000 100 chrV-NC_003076:2937206-2 1.0000 100 chrV-NC_003076:6409336-6 1.0000 100 chrV-NC_003076:3318115-3 1.0000 100 chrV-NC_003076:3048856-3 1.0000 100 chrV-NC_003076:3864674-3 1.0000 100 chrV-NC_003076:22779192- 1.0000 100 chrV-NC_003076:26641454- 1.0000 100 chrV-NC_003076:25307566- 1.0000 100 chrV-NC_003076:792888-79 1.0000 100 chrV-NC_003076:24994780- 1.0000 100 chrV-NC_003076:206021-20 1.0000 100 chrV-NC_003076:24415567- 1.0000 100 chrV-NC_003076:19111986- 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme 12-organelles-nucleus-merged-PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.macs2.0.9_peaks.top500.fasta -maxw 10 -dna -nmotifs 10 -maxsize 200000 -o meme-12-organelles-nucleus-merged-PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.macs2.0.9_peaks.top500 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 10 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 500 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50000 N= 500 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.316 C 0.185 G 0.185 T 0.314 Background letter frequencies (from dataset with add-one prior applied): A 0.316 C 0.185 G 0.185 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 10 sites = 118 llr = 1001 E-value = 4.7e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::::::::: pos.-specific C 4:42717:42 probability G :::::::::: matrix T 5a68293a68 bits 2.4 2.2 1.9 1.7 * * Relative 1.5 * * Entropy 1.2 * **** * (12.2 bits) 1.0 ********** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel TTTTCTCTTT consensus C CCT T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:26837938- 67 6.61e-07 CTATCTATCA CTCTCTCTCT CTCGTGATAT chrV-NC_003076:22997202- 85 6.61e-07 CATTGATCAC CTCTCTCTCT CATCTC chrI-NC_003070:20956381- 23 6.61e-07 TCACTTTTGT CTCTCTCTCT CTCTCTCAAT chrI-NC_003070:6579466-6 57 6.61e-07 TTAGTTTTAC CTCTCTCTCT CTTCTTTTTT chrI-NC_003070:10000490- 58 6.61e-07 AAGCATTAGG CTCTCTCTCT CTCTCTCGTT chrII-NC_003071:436677-4 71 6.61e-07 GACTATTTAT CTCTCTCTCT CGTTTTCATC chrII-NC_003071:999336-9 55 6.61e-07 TTATCTCTTT CTCTCTCTCT CTTCTCTTTT chrII-NC_003071:9580157- 29 6.61e-07 CGTCTTGTCA CTCTCTCTCT CTTCTTTAAA chrIII-NC_003074:2060654 13 6.61e-07 GTCCTCTCTT CTCTCTCTCT CTCGACCAGA chrV-NC_003076:26805576- 68 2.91e-06 CCCTCTCCCT CTTTCTCTCT ACGCATATAT chrV-NC_003076:26138594- 17 2.91e-06 TCTCCATCAT CTCTCTCTTT TTCTCTCTCC chrV-NC_003076:3478453-3 66 2.91e-06 AAAAGGTGCC CTCTCTCTTT TCCCTATCTT chrIV-NC_003075:9319710- 70 2.91e-06 TTTTTTTCTG CTTTCTCTCT GGGTTTTGGC chrIV-NC_003075:8444094- 90 2.91e-06 ATTATTTTCA CTCTCTCTTT T chrIV-NC_003075:499163-4 65 2.91e-06 TTTCTTATTT CTCTCTCTTT CTTGAGAACA chrI-NC_003070:6843352-6 27 2.91e-06 TTACCCTTCA CTTTCTCTCT CTACCTATTC chrIII-NC_003074:1373635 72 2.91e-06 AAAATTGTCT CTTTCTCTCT TCTTTTCTTT chrI-NC_003070:11628844- 79 4.03e-06 ATCTCTCTAT TTCTCTCTCT ACCTTTCTAT chrII-NC_003071:11871421 8 4.03e-06 TCAGTTT TTCTCTCTCT CCGTTTTTGA chrV-NC_003076:229782-22 85 5.94e-06 TGTTTCTCTG CTTTCTCTTT TATCCT chrV-NC_003076:23700558- 40 5.94e-06 TGACTTTTTT CTTTCTCTTT ATGGGGTTTC chrII-NC_003071:14645113 25 5.94e-06 ACATAAGTTT CTTTCTCTTT CCTTCTTTCT chrV-NC_003076:19653125- 29 9.75e-06 GATCTCTCTC TTCTCTCTTT CTCTATTTAG chrI-NC_003070:13228453- 17 9.75e-06 TCAGCTTTTT TTTTCTCTCT TCCTGAAGCA chrI-NC_003070:29764290- 32 9.75e-06 AAAATGCTAT TTCTCTCTTT TTTTCCTCCC chrII-NC_003071:17808033 60 9.75e-06 AACACAATTC TTCTCTCTTT TTTAGGGATT chrIII-NC_003074:2263425 24 9.75e-06 CTCTGTTTTT TTCTCTCTTT ATTTCTGCAT chrV-NC_003076:23147444- 33 1.30e-05 TAGTCTCAAG TTTTCTCTTT TATGTCTGAT chrV-NC_003076:10649957- 1 1.30e-05 . TTTTCTCTTT TTCTTGGGTT chrIV-NC_003075:17322266 78 1.30e-05 CTCGAAATGT TTTTCTCTTT TCCTTTTTGG chrII-NC_003071:19298962 55 1.30e-05 AAGGCTTTAG TTTTCTCTTT AAATGGGACC chrIII-NC_003074:7507408 28 1.30e-05 CTTTCCTCTG TTTTCTCTTT CTTTCCCTTT chrIII-NC_003074:7789683 38 1.30e-05 ACCACATTTC TTTTCTCTTT TGGGGGAAGA chrV-NC_003076:24996114- 83 1.51e-05 AGTACATTAT CTCTCTCTCC CCATTTCT chrIII-NC_003074:5121290 82 1.51e-05 GTCGCTTTTA CTCTCTCTCC CATCCTATA chrV-NC_003076:24510324- 47 1.93e-05 CACTTGTGAT CTTCCTCTTT CGGAAATAAA chrIII-NC_003074:2117737 84 1.93e-05 CCTTATGTGG CTCTCTCTTC TCTTTCT chrV-NC_003076:1894217-1 62 2.60e-05 AACCAGAAGA CTTTCTTTCT TTTTAAGGTT chrIV-NC_003075:13013959 43 2.60e-05 TGAATTTCAC TTTCCTCTCT CGGACCTTAC chrI-NC_003070:11630791- 80 2.60e-05 TTTCTTTTTT CTTTCTTTCT TTGCACTCTT chrI-NC_003070:9269999-9 81 2.60e-05 CAATGGTAAA CTCTCTTTTT GCCTTCATCC chrI-NC_003070:28117313- 33 2.60e-05 GCCCCTTGTG CTTTCTTTCT CCTAAAGAAG chrI-NC_003070:11061463- 85 2.60e-05 AGAAGACTAT TTCTCTCTCC TCTCTC chrII-NC_003071:15690357 59 2.60e-05 ACCAAGGTAG CTTTCTTTCT ACTTATGTAC chrII-NC_003071:15784393 3 2.60e-05 CC TTCTCTCTCC CATAACCCTA chrII-NC_003071:17819844 56 2.60e-05 GAGCCCATAC CTCTCTTTTT TCCTCTAAAC chrIII-NC_003074:1803827 89 2.60e-05 CGACTGGCAC CTCTCTTTTT TC chrIII-NC_003074:1216726 30 2.60e-05 GAGATTTTTT CTTTCTTTCT CCTTTTCTAC chrII-NC_003071:9523112- 51 2.91e-05 CACGTGTTCC CTTTCTCTTC TTCCTCCTTT chrV-NC_003076:8903405-8 40 3.68e-05 AGTAAAATCA TTTCCTCTTT TGGCGGGAGA chrIV-NC_003075:13381861 75 3.68e-05 AACCAAATCT CTTTCTTTTT TTCTGTAGTC chrIV-NC_003075:14912987 18 3.68e-05 CTTCATCCTC TTTCCTCTTT TGTCTTCTTC chrIV-NC_003075:17432064 14 3.68e-05 TTCTGCTTTT TTTCCTCTTT CCTTTTCACT chrII-NC_003071:19198253 40 3.68e-05 CCTTTTCTAC TTTCCTCTTT TGGATTCATT chrV-NC_003076:7265888-7 20 4.44e-05 AGAAAATGTC TTTTCTTTCT TTCATTAAAC chrIV-NC_003075:9249999- 72 4.44e-05 TCCGCGTCCA TTTTCTTTCT TCTTCTGAAG chrV-NC_003076:26765562- 73 5.78e-05 TTTTACTTGT TTTTCTTTTT GGATCCAAGT chrIV-NC_003075:17398887 79 5.78e-05 TAACATTTTC CTTTTTCTCT CATAATTCCT chrII-NC_003071:17743078 8 5.78e-05 TCTTTTC TTTTCTTTTT TTCTTTTTTT chrIII-NC_003074:467781- 69 5.78e-05 GCTATCATCA TTTTCTTTTT CTTACTTCAC chrV-NC_003076:4451032-4 78 6.15e-05 CTGGGTCCTA CTTTCCCTTT TCTTCCTAAA chrI-NC_003070:7384592-7 55 6.15e-05 CTCAAAATAC TTCTTTCTCT GTCTCTGTCT chrII-NC_003071:16221745 32 6.15e-05 CATCAAATCT CTTTCCCTTT ATAAAACCTC chrIII-NC_003074:5222133 39 6.15e-05 TATGTTTTTT CTTTCCCTTT TTGCTGTGTT chrIV-NC_003075:16154659 8 7.76e-05 AGCTGAA TTCTTTCTTT CACCGGACGT chrIV-NC_003075:15918178 83 7.76e-05 TTGCTTTTTC TTCTTTCTTT TCTCACCA chrI-NC_003070:8717829-8 75 7.76e-05 AACGCGTGGG TTTTTTCTCT GCACAATGCG chrV-NC_003076:6381170-6 51 8.12e-05 AGTGATACTT TTCCCTTTCT GCCTATGACA chrV-NC_003076:18000368- 37 8.12e-05 TCAATAGAGT TTCCCTTTCT AAGACTACTA chrV-NC_003076:22779192- 91 9.24e-05 ATATGTAACT TTTTTTCTTT chrV-NC_003076:16563593- 85 9.24e-05 TCCACAAAAG TTTTTTCTTT GGTTTG chrIV-NC_003075:5739029- 63 9.24e-05 AAGTTTCACA TTTTTTCTTT AACTGCCCAC chrIII-NC_003074:7297913 87 9.24e-05 GAACTTTCTA TTTTTTCTTT TCTC chrII-NC_003071:7940337- 11 9.87e-05 GTAGATTTGT TTCCCTTTTT GGTTAGATTA chrI-NC_003070:365450-36 71 1.03e-04 GACATGTCTC CTCCCCCTTT CCTTTATTAG chrIII-NC_003074:2293953 34 1.03e-04 AGTACATGAG TTTCCTCTTC TGCCTCTTTG chrV-NC_003076:39060-391 70 1.16e-04 GTATGTCAAC TTTCCTTTTT TAGATTTAAG chrV-NC_003076:24843037- 36 1.16e-04 ACCTGACCTC CTCTCCTTCT GGAGTTTTCA chrV-NC_003076:10455505- 16 1.16e-04 GAGATCTTTT TTTCCTTTTT ATTGTTTTCT chrII-NC_003071:10191589 60 1.16e-04 TCTACTTTTG TTTTCTTTCC TTTTTCGTCT chrII-NC_003071:14733361 88 1.16e-04 CTCCTCAGTC CTCTTTCTCC GTC chrIII-NC_003074:3098128 77 1.16e-04 TAAAGTTTTG TTTCCTTTTT GGGATTACAA chrIII-NC_003074:5293166 86 1.16e-04 TTACTATATG TTTCCTTTTT TACAA chrIII-NC_003074:2267043 20 1.16e-04 ATAAATGTTG GTCTCTCTTT ATTATTTCCC chrI-NC_003070:18399009- 40 1.34e-04 TCTTAAAAGT CTTCTTCTTT TGGGTTGCTT chrI-NC_003070:12455681- 64 1.34e-04 ACCAAGTCTT CTTCTTCTTT ACTCTCTCCT chrI-NC_003070:9990630-9 91 1.34e-04 CATACTTTGC TTTTCTTTTC chrI-NC_003070:5513978-5 28 1.34e-04 ACAGATGGAC TTTTCTTTTC TTGTCTTAAA chrII-NC_003071:15275171 72 1.34e-04 GTGAGGGTTT GTTTCTCTTT GGGCTGTGAT chrV-NC_003076:25307566- 65 1.47e-04 CCAAATTTGT CTCTTTTTTT GTATTGCTAC chrV-NC_003076:26851845- 65 1.47e-04 TTCCACGTGC CTTTTTTTCT GCACCACTAT chrI-NC_003070:29216786- 87 1.47e-04 ATATCTGAGC TTCTTTCTCC TCTA chrII-NC_003071:18801878 89 1.47e-04 TCTTCTTTGC CTCCCTTTCC GT chrV-NC_003076:2856549-2 32 1.57e-04 TTGCTTTTTA TTTCCCCTTT AGGGTAGCTT chrIV-NC_003075:13854244 47 1.57e-04 ACTTTTATAG CTTTCCTTTT CAGGAAAGTA chrIII-NC_003074:8244862 88 1.57e-04 GCATGATGAG CTTTCCTTTT ATA chrV-NC_003076:2284163-2 90 1.76e-04 AACTCTGCTC TTTTTTCTCC T chrIV-NC_003075:14196781 33 1.76e-04 ATCTTTTTGC TTTCTTCTTT GTTTTTGCCA chrI-NC_003070:2120839-2 69 1.76e-04 AAAGTTATGG TTCTTTCTTC CATCGCTTCG chrI-NC_003070:10726311- 89 1.76e-04 CACTTTTGTC CTTTTTTTTT AA chrV-NC_003076:20011316- 66 1.89e-04 AAAGAAGGTG TTCTTTTTTT GTTTTATAGC chrII-NC_003071:18813111 74 1.89e-04 TTTAGGTGTT TTTTTTTTCT TCTTTTAATT chrIII-NC_003074:4606048 87 1.89e-04 CTCCATTTTC TTCTTTTTTT GGTA chrI-NC_003070:22814110- 26 2.01e-04 AATATATTTT TTTTCCTTTT CTGGATTTGG chrII-NC_003071:9037903- 59 2.01e-04 TTGTATTATT TTTTCCTTTT CGGGAAACTA chrIV-NC_003075:13016297 17 2.17e-04 AACGCGGAGT TTCTGTCTCT GTGAATGCCA chrII-NC_003071:13280749 40 2.17e-04 AGAGCCAGAG TTCTGTCTCT CACTTGTCTT chrIII-NC_003074:2441566 80 2.17e-04 TATCCATTCA TTTTTTTTTT TCATTTCTTC chrV-NC_003076:1891504-1 66 2.39e-04 TACATTTTTG GTTTCTCTCC CAAAATTGAA chrV-NC_003076:7695385-7 82 2.39e-04 CCAACATGTT TTCTTCCTTT TATCCGTGT chrV-NC_003076:6828965-6 67 2.39e-04 AACTGTCAAA GTCTCTCTTC ACCTCAAGAT chrI-NC_003070:4549734-4 49 2.39e-04 AACAGACATT TTCTGTCTTT GGATAAATCG chrII-NC_003071:12774547 37 2.39e-04 ATTGAGTAAA TTTCCTTTTC CTAAAGGGGA chrI-NC_003070:23267188- 37 2.50e-04 AAAGTGTAGC CTTCTTTTCT TAGCTAAAAA chrV-NC_003076:9629118-9 44 2.80e-04 TGATTCGAAA TTTCCCTTCT CGGCTCAAAT chrI-NC_003070:6837297-6 88 2.80e-04 AATTTTGATG TTTCTTCTCC AGA chrIII-NC_003074:4161767 40 2.80e-04 AAAAGCGAAC CTTTTTTTCC AATGACTGAA chrI-NC_003070:25391261- 31 3.25e-04 ACCACTTGGT TTCCTCCTCT ATTCCGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:26837938- 6.6e-07 66_[+1]_24 chrV-NC_003076:22997202- 6.6e-07 84_[+1]_6 chrI-NC_003070:20956381- 6.6e-07 22_[+1]_68 chrI-NC_003070:6579466-6 6.6e-07 56_[+1]_34 chrI-NC_003070:10000490- 6.6e-07 57_[+1]_33 chrII-NC_003071:436677-4 6.6e-07 70_[+1]_20 chrII-NC_003071:999336-9 6.6e-07 54_[+1]_36 chrII-NC_003071:9580157- 6.6e-07 28_[+1]_62 chrIII-NC_003074:2060654 6.6e-07 12_[+1]_78 chrV-NC_003076:26805576- 2.9e-06 67_[+1]_23 chrV-NC_003076:26138594- 2.9e-06 16_[+1]_74 chrV-NC_003076:3478453-3 2.9e-06 65_[+1]_25 chrIV-NC_003075:9319710- 2.9e-06 69_[+1]_21 chrIV-NC_003075:8444094- 2.9e-06 89_[+1]_1 chrIV-NC_003075:499163-4 2.9e-06 64_[+1]_26 chrI-NC_003070:6843352-6 2.9e-06 26_[+1]_64 chrIII-NC_003074:1373635 2.9e-06 71_[+1]_19 chrI-NC_003070:11628844- 4e-06 78_[+1]_12 chrII-NC_003071:11871421 4e-06 7_[+1]_83 chrV-NC_003076:229782-22 5.9e-06 84_[+1]_6 chrV-NC_003076:23700558- 5.9e-06 39_[+1]_51 chrII-NC_003071:14645113 5.9e-06 24_[+1]_66 chrV-NC_003076:19653125- 9.7e-06 28_[+1]_62 chrI-NC_003070:13228453- 9.7e-06 16_[+1]_74 chrI-NC_003070:29764290- 9.7e-06 31_[+1]_59 chrII-NC_003071:17808033 9.7e-06 59_[+1]_31 chrIII-NC_003074:2263425 9.7e-06 23_[+1]_67 chrV-NC_003076:23147444- 1.3e-05 32_[+1]_58 chrV-NC_003076:10649957- 1.3e-05 [+1]_90 chrIV-NC_003075:17322266 1.3e-05 77_[+1]_13 chrII-NC_003071:19298962 1.3e-05 54_[+1]_36 chrIII-NC_003074:7507408 1.3e-05 27_[+1]_63 chrIII-NC_003074:7789683 1.3e-05 37_[+1]_53 chrV-NC_003076:24996114- 1.5e-05 82_[+1]_8 chrIII-NC_003074:5121290 1.5e-05 81_[+1]_9 chrV-NC_003076:24510324- 1.9e-05 46_[+1]_44 chrIII-NC_003074:2117737 1.9e-05 83_[+1]_7 chrV-NC_003076:1894217-1 2.6e-05 61_[+1]_29 chrIV-NC_003075:13013959 2.6e-05 42_[+1]_48 chrI-NC_003070:11630791- 2.6e-05 79_[+1]_11 chrI-NC_003070:9269999-9 2.6e-05 80_[+1]_10 chrI-NC_003070:28117313- 2.6e-05 32_[+1]_58 chrI-NC_003070:11061463- 2.6e-05 84_[+1]_6 chrII-NC_003071:15690357 2.6e-05 58_[+1]_32 chrII-NC_003071:15784393 2.6e-05 2_[+1]_88 chrII-NC_003071:17819844 2.6e-05 55_[+1]_35 chrIII-NC_003074:1803827 2.6e-05 88_[+1]_2 chrIII-NC_003074:1216726 2.6e-05 29_[+1]_61 chrII-NC_003071:9523112- 2.9e-05 50_[+1]_40 chrV-NC_003076:8903405-8 3.7e-05 39_[+1]_51 chrIV-NC_003075:13381861 3.7e-05 74_[+1]_16 chrIV-NC_003075:14912987 3.7e-05 17_[+1]_73 chrIV-NC_003075:17432064 3.7e-05 13_[+1]_77 chrII-NC_003071:19198253 3.7e-05 39_[+1]_51 chrV-NC_003076:7265888-7 4.4e-05 19_[+1]_71 chrIV-NC_003075:9249999- 4.4e-05 71_[+1]_19 chrV-NC_003076:26765562- 5.8e-05 72_[+1]_18 chrIV-NC_003075:17398887 5.8e-05 78_[+1]_12 chrII-NC_003071:17743078 5.8e-05 7_[+1]_83 chrIII-NC_003074:467781- 5.8e-05 68_[+1]_22 chrV-NC_003076:4451032-4 6.2e-05 77_[+1]_13 chrI-NC_003070:7384592-7 6.2e-05 54_[+1]_36 chrII-NC_003071:16221745 6.2e-05 31_[+1]_59 chrIII-NC_003074:5222133 6.2e-05 38_[+1]_52 chrIV-NC_003075:16154659 7.8e-05 7_[+1]_83 chrIV-NC_003075:15918178 7.8e-05 82_[+1]_8 chrI-NC_003070:8717829-8 7.8e-05 74_[+1]_16 chrV-NC_003076:6381170-6 8.1e-05 50_[+1]_40 chrV-NC_003076:18000368- 8.1e-05 36_[+1]_54 chrV-NC_003076:22779192- 9.2e-05 90_[+1] chrV-NC_003076:16563593- 9.2e-05 84_[+1]_6 chrIV-NC_003075:5739029- 9.2e-05 62_[+1]_28 chrIII-NC_003074:7297913 9.2e-05 86_[+1]_4 chrII-NC_003071:7940337- 9.9e-05 10_[+1]_80 chrI-NC_003070:365450-36 0.0001 70_[+1]_20 chrIII-NC_003074:2293953 0.0001 33_[+1]_57 chrV-NC_003076:39060-391 0.00012 69_[+1]_21 chrV-NC_003076:24843037- 0.00012 35_[+1]_55 chrV-NC_003076:10455505- 0.00012 15_[+1]_75 chrII-NC_003071:10191589 0.00012 59_[+1]_31 chrII-NC_003071:14733361 0.00012 87_[+1]_3 chrIII-NC_003074:3098128 0.00012 76_[+1]_14 chrIII-NC_003074:5293166 0.00012 85_[+1]_5 chrIII-NC_003074:2267043 0.00012 19_[+1]_71 chrI-NC_003070:18399009- 0.00013 39_[+1]_51 chrI-NC_003070:12455681- 0.00013 63_[+1]_27 chrI-NC_003070:9990630-9 0.00013 90_[+1] chrI-NC_003070:5513978-5 0.00013 27_[+1]_63 chrII-NC_003071:15275171 0.00013 71_[+1]_19 chrV-NC_003076:25307566- 0.00015 64_[+1]_26 chrV-NC_003076:26851845- 0.00015 64_[+1]_26 chrI-NC_003070:29216786- 0.00015 86_[+1]_4 chrII-NC_003071:18801878 0.00015 88_[+1]_2 chrV-NC_003076:2856549-2 0.00016 31_[+1]_59 chrIV-NC_003075:13854244 0.00016 46_[+1]_44 chrIII-NC_003074:8244862 0.00016 87_[+1]_3 chrV-NC_003076:2284163-2 0.00018 89_[+1]_1 chrIV-NC_003075:14196781 0.00018 32_[+1]_58 chrI-NC_003070:2120839-2 0.00018 68_[+1]_22 chrI-NC_003070:10726311- 0.00018 88_[+1]_2 chrV-NC_003076:20011316- 0.00019 65_[+1]_25 chrII-NC_003071:18813111 0.00019 73_[+1]_17 chrIII-NC_003074:4606048 0.00019 86_[+1]_4 chrI-NC_003070:22814110- 0.0002 25_[+1]_65 chrII-NC_003071:9037903- 0.0002 58_[+1]_32 chrIV-NC_003075:13016297 0.00022 16_[+1]_74 chrII-NC_003071:13280749 0.00022 39_[+1]_51 chrIII-NC_003074:2441566 0.00022 79_[+1]_11 chrV-NC_003076:1891504-1 0.00024 65_[+1]_25 chrV-NC_003076:7695385-7 0.00024 81_[+1]_9 chrV-NC_003076:6828965-6 0.00024 66_[+1]_24 chrI-NC_003070:4549734-4 0.00024 48_[+1]_42 chrII-NC_003071:12774547 0.00024 36_[+1]_54 chrI-NC_003070:23267188- 0.00025 36_[+1]_54 chrV-NC_003076:9629118-9 0.00028 43_[+1]_47 chrI-NC_003070:6837297-6 0.00028 87_[+1]_3 chrIII-NC_003074:4161767 0.00028 39_[+1]_51 chrI-NC_003070:25391261- 0.00032 30_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=10 seqs=118 chrV-NC_003076:26837938- ( 67) CTCTCTCTCT 1 chrV-NC_003076:22997202- ( 85) CTCTCTCTCT 1 chrI-NC_003070:20956381- ( 23) CTCTCTCTCT 1 chrI-NC_003070:6579466-6 ( 57) CTCTCTCTCT 1 chrI-NC_003070:10000490- ( 58) CTCTCTCTCT 1 chrII-NC_003071:436677-4 ( 71) CTCTCTCTCT 1 chrII-NC_003071:999336-9 ( 55) CTCTCTCTCT 1 chrII-NC_003071:9580157- ( 29) CTCTCTCTCT 1 chrIII-NC_003074:2060654 ( 13) CTCTCTCTCT 1 chrV-NC_003076:26805576- ( 68) CTTTCTCTCT 1 chrV-NC_003076:26138594- ( 17) CTCTCTCTTT 1 chrV-NC_003076:3478453-3 ( 66) CTCTCTCTTT 1 chrIV-NC_003075:9319710- ( 70) CTTTCTCTCT 1 chrIV-NC_003075:8444094- ( 90) CTCTCTCTTT 1 chrIV-NC_003075:499163-4 ( 65) CTCTCTCTTT 1 chrI-NC_003070:6843352-6 ( 27) CTTTCTCTCT 1 chrIII-NC_003074:1373635 ( 72) CTTTCTCTCT 1 chrI-NC_003070:11628844- ( 79) TTCTCTCTCT 1 chrII-NC_003071:11871421 ( 8) TTCTCTCTCT 1 chrV-NC_003076:229782-22 ( 85) CTTTCTCTTT 1 chrV-NC_003076:23700558- ( 40) CTTTCTCTTT 1 chrII-NC_003071:14645113 ( 25) CTTTCTCTTT 1 chrV-NC_003076:19653125- ( 29) TTCTCTCTTT 1 chrI-NC_003070:13228453- ( 17) TTTTCTCTCT 1 chrI-NC_003070:29764290- ( 32) TTCTCTCTTT 1 chrII-NC_003071:17808033 ( 60) TTCTCTCTTT 1 chrIII-NC_003074:2263425 ( 24) TTCTCTCTTT 1 chrV-NC_003076:23147444- ( 33) TTTTCTCTTT 1 chrV-NC_003076:10649957- ( 1) TTTTCTCTTT 1 chrIV-NC_003075:17322266 ( 78) TTTTCTCTTT 1 chrII-NC_003071:19298962 ( 55) TTTTCTCTTT 1 chrIII-NC_003074:7507408 ( 28) TTTTCTCTTT 1 chrIII-NC_003074:7789683 ( 38) TTTTCTCTTT 1 chrV-NC_003076:24996114- ( 83) CTCTCTCTCC 1 chrIII-NC_003074:5121290 ( 82) CTCTCTCTCC 1 chrV-NC_003076:24510324- ( 47) CTTCCTCTTT 1 chrIII-NC_003074:2117737 ( 84) CTCTCTCTTC 1 chrV-NC_003076:1894217-1 ( 62) CTTTCTTTCT 1 chrIV-NC_003075:13013959 ( 43) TTTCCTCTCT 1 chrI-NC_003070:11630791- ( 80) CTTTCTTTCT 1 chrI-NC_003070:9269999-9 ( 81) CTCTCTTTTT 1 chrI-NC_003070:28117313- ( 33) CTTTCTTTCT 1 chrI-NC_003070:11061463- ( 85) TTCTCTCTCC 1 chrII-NC_003071:15690357 ( 59) CTTTCTTTCT 1 chrII-NC_003071:15784393 ( 3) TTCTCTCTCC 1 chrII-NC_003071:17819844 ( 56) CTCTCTTTTT 1 chrIII-NC_003074:1803827 ( 89) CTCTCTTTTT 1 chrIII-NC_003074:1216726 ( 30) CTTTCTTTCT 1 chrII-NC_003071:9523112- ( 51) CTTTCTCTTC 1 chrV-NC_003076:8903405-8 ( 40) TTTCCTCTTT 1 chrIV-NC_003075:13381861 ( 75) CTTTCTTTTT 1 chrIV-NC_003075:14912987 ( 18) TTTCCTCTTT 1 chrIV-NC_003075:17432064 ( 14) TTTCCTCTTT 1 chrII-NC_003071:19198253 ( 40) TTTCCTCTTT 1 chrV-NC_003076:7265888-7 ( 20) TTTTCTTTCT 1 chrIV-NC_003075:9249999- ( 72) TTTTCTTTCT 1 chrV-NC_003076:26765562- ( 73) TTTTCTTTTT 1 chrIV-NC_003075:17398887 ( 79) CTTTTTCTCT 1 chrII-NC_003071:17743078 ( 8) TTTTCTTTTT 1 chrIII-NC_003074:467781- ( 69) TTTTCTTTTT 1 chrV-NC_003076:4451032-4 ( 78) CTTTCCCTTT 1 chrI-NC_003070:7384592-7 ( 55) TTCTTTCTCT 1 chrII-NC_003071:16221745 ( 32) CTTTCCCTTT 1 chrIII-NC_003074:5222133 ( 39) CTTTCCCTTT 1 chrIV-NC_003075:16154659 ( 8) TTCTTTCTTT 1 chrIV-NC_003075:15918178 ( 83) TTCTTTCTTT 1 chrI-NC_003070:8717829-8 ( 75) TTTTTTCTCT 1 chrV-NC_003076:6381170-6 ( 51) TTCCCTTTCT 1 chrV-NC_003076:18000368- ( 37) TTCCCTTTCT 1 chrV-NC_003076:22779192- ( 91) TTTTTTCTTT 1 chrV-NC_003076:16563593- ( 85) TTTTTTCTTT 1 chrIV-NC_003075:5739029- ( 63) TTTTTTCTTT 1 chrIII-NC_003074:7297913 ( 87) TTTTTTCTTT 1 chrII-NC_003071:7940337- ( 11) TTCCCTTTTT 1 chrI-NC_003070:365450-36 ( 71) CTCCCCCTTT 1 chrIII-NC_003074:2293953 ( 34) TTTCCTCTTC 1 chrV-NC_003076:39060-391 ( 70) TTTCCTTTTT 1 chrV-NC_003076:24843037- ( 36) CTCTCCTTCT 1 chrV-NC_003076:10455505- ( 16) TTTCCTTTTT 1 chrII-NC_003071:10191589 ( 60) TTTTCTTTCC 1 chrII-NC_003071:14733361 ( 88) CTCTTTCTCC 1 chrIII-NC_003074:3098128 ( 77) TTTCCTTTTT 1 chrIII-NC_003074:5293166 ( 86) TTTCCTTTTT 1 chrIII-NC_003074:2267043 ( 20) GTCTCTCTTT 1 chrI-NC_003070:18399009- ( 40) CTTCTTCTTT 1 chrI-NC_003070:12455681- ( 64) CTTCTTCTTT 1 chrI-NC_003070:9990630-9 ( 91) TTTTCTTTTC 1 chrI-NC_003070:5513978-5 ( 28) TTTTCTTTTC 1 chrII-NC_003071:15275171 ( 72) GTTTCTCTTT 1 chrV-NC_003076:25307566- ( 65) CTCTTTTTTT 1 chrV-NC_003076:26851845- ( 65) CTTTTTTTCT 1 chrI-NC_003070:29216786- ( 87) TTCTTTCTCC 1 chrII-NC_003071:18801878 ( 89) CTCCCTTTCC 1 chrV-NC_003076:2856549-2 ( 32) TTTCCCCTTT 1 chrIV-NC_003075:13854244 ( 47) CTTTCCTTTT 1 chrIII-NC_003074:8244862 ( 88) CTTTCCTTTT 1 chrV-NC_003076:2284163-2 ( 90) TTTTTTCTCC 1 chrIV-NC_003075:14196781 ( 33) TTTCTTCTTT 1 chrI-NC_003070:2120839-2 ( 69) TTCTTTCTTC 1 chrI-NC_003070:10726311- ( 89) CTTTTTTTTT 1 chrV-NC_003076:20011316- ( 66) TTCTTTTTTT 1 chrII-NC_003071:18813111 ( 74) TTTTTTTTCT 1 chrIII-NC_003074:4606048 ( 87) TTCTTTTTTT 1 chrI-NC_003070:22814110- ( 26) TTTTCCTTTT 1 chrII-NC_003071:9037903- ( 59) TTTTCCTTTT 1 chrIV-NC_003075:13016297 ( 17) TTCTGTCTCT 1 chrII-NC_003071:13280749 ( 40) TTCTGTCTCT 1 chrIII-NC_003074:2441566 ( 80) TTTTTTTTTT 1 chrV-NC_003076:1891504-1 ( 66) GTTTCTCTCC 1 chrV-NC_003076:7695385-7 ( 82) TTCTTCCTTT 1 chrV-NC_003076:6828965-6 ( 67) GTCTCTCTTC 1 chrI-NC_003070:4549734-4 ( 49) TTCTGTCTTT 1 chrII-NC_003071:12774547 ( 37) TTTCCTTTTC 1 chrI-NC_003070:23267188- ( 37) CTTCTTTTCT 1 chrV-NC_003076:9629118-9 ( 44) TTTCCCTTCT 1 chrI-NC_003070:6837297-6 ( 88) TTTCTTCTCC 1 chrIII-NC_003074:4161767 ( 40) CTTTTTTTCC 1 chrI-NC_003070:25391261- ( 31) TTCCTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 10.5657 E= 4.7e-056 -1353 122 -245 76 -1353 -1353 -1353 167 -1353 117 -1353 90 -1353 20 -1353 133 -1353 200 -286 -41 -1353 -75 -1353 150 -1353 182 -1353 14 -1353 -1353 -1353 167 -1353 117 -1353 90 -1353 -13 -1353 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 118 E= 4.7e-056 0.000000 0.432203 0.033898 0.533898 0.000000 0.000000 0.000000 1.000000 0.000000 0.415254 0.000000 0.584746 0.000000 0.211864 0.000000 0.788136 0.000000 0.737288 0.025424 0.237288 0.000000 0.110169 0.000000 0.889831 0.000000 0.652542 0.000000 0.347458 0.000000 0.000000 0.000000 1.000000 0.000000 0.415254 0.000000 0.584746 0.000000 0.169492 0.000000 0.830508 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TC]T[TC][TC][CT]T[CT]T[TC]T -------------------------------------------------------------------------------- Time 62.75 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 10 sites = 117 llr = 985 E-value = 9.2e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2:49a9543: pos.-specific C 7921:::::: probability G 1:2:::427a matrix T :121:1:4:: bits 2.4 2.2 * * 1.9 * * 1.7 * * * Relative 1.5 * * ** Entropy 1.2 ** ** ** (12.1 bits) 1.0 ** **** ** 0.7 ** **** ** 0.5 ** **** ** 0.2 ** ******* 0.0 ---------- Multilevel CCAAAAATGG consensus A T GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:9480415-9 42 6.78e-07 ATGAAATTTG CCAAAAGTGG AAACATGTCG chrV-NC_003076:17073608- 45 1.36e-06 GTGGAGCATA CCAAAAGAGG AAAGAGGCAG chrIV-NC_003075:14813525 55 1.36e-06 AAATTACATA CCAAAAGAGG GTAAGTTCTT chrI-NC_003070:27713510- 50 1.36e-06 AACAAAAACA CCAAAAGAGG TAAATCTCTT chrI-NC_003070:18690442- 53 1.36e-06 AATCGTGGTT CCAAAAGAGG AAATATAATA chrII-NC_003071:15206977 43 1.36e-06 GTTTTCGTTA CCAAAAGAGG AAAATATCTT chrV-NC_003076:3048856-3 40 3.32e-06 AATAAAACTT CCAAAAATGG GTTGTATATA chrV-NC_003076:16563593- 47 3.32e-06 TTCTGTTTTA CCAAAAATGG CAAAAAGTAA chrII-NC_003071:14956317 42 3.32e-06 CGAATATTTA CCAAAAATGG AAGATTCTAT chrII-NC_003071:383333-3 44 3.32e-06 ACGACTGTTA CCAAAAATGG AGTTAACGGC chrIII-NC_003074:4732994 39 3.32e-06 AAAAACCTTT CCAAAAATGG CAAAGAACCG chrV-NC_003076:24415567- 32 4.88e-06 TCTCATATAC CCAAAAAAGG ATGGAAACTT chrV-NC_003076:22388451- 6 4.88e-06 ATCCC CCAAAAAAGG AAAAAAGCTG chrI-NC_003070:26011675- 41 4.88e-06 GGGACGATTG CCAAAAAAGG GAAGAGAGCT chrII-NC_003071:17819844 3 4.88e-06 TA CCAAAAAAGG AAAGTTTCCA chrV-NC_003076:3864674-3 46 5.96e-06 GATTCCCACG CCGAAAGTGG AAAGAGAAAC chrV-NC_003076:9133297-9 76 5.96e-06 TGCTTTCTTG CCGAAAGTGG AAAGAAAGAT chrI-NC_003070:9101220-9 71 5.96e-06 AGAGTTGGTG CCGAAAGTGG AGAGATGGTA chrV-NC_003076:792888-79 46 7.28e-06 ATGTGGCTTT CCCAAAGGGG AAAGAGAATT chrV-NC_003076:2284163-2 52 7.28e-06 CTTAAACATT CCCAAAGGGG AAAGAAGACA chrIV-NC_003075:15205290 47 7.28e-06 TCATATTTTA CCCAAAAAGG ATCAACCATT chrI-NC_003070:27292918- 43 7.28e-06 TAATCCTTTT CCCAAAGGGG TCAGGTTGAC chrI-NC_003070:10679066- 54 8.63e-06 AACGTAATGC CCTAAAGTGG AGAAAGTGTC chrII-NC_003071:12941145 56 8.63e-06 ACGCACATTA CCAAAAAGGG CAGAGAGATT chrV-NC_003076:1826857-1 42 9.99e-06 AGCCGAATTT CCTAAAGAGG AAATGATGTT chrIV-NC_003075:12043858 50 9.99e-06 GAATCAAAAT CCGAAAATGG TAAAAAAAAC chrI-NC_003070:7930462-7 42 1.13e-05 TAGAGATTAG CCGAAAAAGG AAAGTATGAG chrIII-NC_003074:5954468 79 1.13e-05 CTTGTCTGAT CCGAAAAAGG TAAAACTGCA chrIII-NC_003074:2058364 35 1.13e-05 GCTGAGAGTG CCCAAAAGGG TTTGCCAAAT chrI-NC_003070:23075622- 77 1.25e-05 ACACACTTTT CCTAAAATGG CAATCTACCT chrII-NC_003071:9577581- 50 1.25e-05 AAGAAAGAAG CCTAAAATGG CTAAAAGGTT chrIII-NC_003074:1136472 41 1.25e-05 TGCTTGTTCT CCTAAAATGG AATTATCTTT chrIII-NC_003074:7989294 82 1.25e-05 GTATATATGT CCTAAAATGG ATAATAATC chrV-NC_003076:3865681-3 15 1.40e-05 GTGTGTTTTG CCTAAAAAGG AAAGTTGTCA chrV-NC_003076:15711909- 80 1.40e-05 TGAGTGACAT CCTAAAGGGG ATATACATAA chrI-NC_003070:29788413- 46 1.40e-05 TTCCTAAAAC CCTAAAGGGG AAATCTTCCC chrI-NC_003070:21192322- 46 1.40e-05 GACCGCTTTT CCTAAAAAGG AAAGAAATTA chrII-NC_003071:16504451 49 1.40e-05 GGGACAAAAT CCTAAAGGGG AAGAGATTCC chrI-NC_003070:20723351- 10 1.56e-05 CTTCACCCA CCAAAAGTAG CAAACCTTTG chrIV-NC_003075:6794586- 68 1.74e-05 CGTCAAAAGA CCAAAAGAAG AAAGAAAAGT chrIII-NC_003074:2123354 22 1.74e-05 GAAGAAAGTT CCAAAAGAAG AAAACAGCCA chrI-NC_003070:11630791- 43 1.93e-05 AAATAAAAAA ACAAAAGTGG TAAATGGTAA chrIV-NC_003075:8435496- 3 2.31e-05 TT CCAAAAATAG AACAAAATAT chrII-NC_003071:18811109 53 2.31e-05 TTAAGAAAGA CCAAAAATAG CATATTTTGA chrIII-NC_003074:5299080 61 2.31e-05 CTAATCTCTT CCCAAAGAAG AATCATCACT chrIII-NC_003074:5121290 61 2.64e-05 ACAAAGCGCC CCAAAAGGAG CGTCGCTTTT chrV-NC_003076:21763572- 77 3.09e-05 ATCGGGTATG ACCAAAGAGG AAATGACACG chrIV-NC_003075:11604849 39 3.09e-05 CGGTTTATTT ACCAAAGAGG AAAATTTGCA chrI-NC_003070:17506712- 12 3.09e-05 ATTCCTTTGT ACAAAAATGG AAACAAAGGT chrII-NC_003071:14224191 30 3.09e-05 AATCTGTGGA ACAAAAATGG CAAAAATATT chrII-NC_003071:9037903- 20 3.09e-05 TAATATAATT ACAAAAATGG GCCAGGCTAA chrV-NC_003076:26042706- 7 3.59e-05 AAGGGA CCCAAAAAAG ATAACATGCT chrV-NC_003076:4221058-4 90 3.59e-05 ACTAGTACTA ACAAAAAAGG G chrI-NC_003070:26581149- 50 3.59e-05 AGTGGTAAGT CCCAAAGGAG CACGTCAGTG chrI-NC_003070:25046712- 88 4.00e-05 ATAAAAAAAA ACGAAAGTGG AAG chrI-NC_003070:28673890- 80 4.00e-05 ATATTTATAT ACCAAAATGG CACATAAATC chrI-NC_003070:6459718-6 47 4.00e-05 CGGGAAGAAG ACGAAAGTGG AAAGTTTGAT chrI-NC_003070:10726311- 35 4.00e-05 AAAGACCTTG CCAAAAAGAG AAAGCGAAAA chrI-NC_003070:28117313- 43 4.50e-05 CTTTCTTTCT CCTAAAGAAG CAAAGTACAC chrI-NC_003070:9950825-9 91 5.06e-05 CCAATAAAAC CCCAAAAGAG chrV-NC_003076:6320620-6 72 5.65e-05 TGAATCGAGG GCAAAAGAGG AAAGTTAGGT chrI-NC_003070:12455681- 34 5.65e-05 AATTGAAAAC ACTAAAGAGG AAATTAAGTG chrIII-NC_003074:5236746 87 5.65e-05 TCATTTCTTT CCTAAAATAG TAAC chrV-NC_003076:20898801- 51 6.41e-05 TAATATGTTT CCAAATGTGG AATTCTTTTG chrI-NC_003070:4600560-4 35 7.03e-05 CATGAAAATA GCAAAAATGG AAAACATGAT chrI-NC_003070:11373372- 52 7.03e-05 TTTTTTATTT CCGAAAAGAG AAACAAACAA chrI-NC_003070:8595088-8 53 7.03e-05 CCTAAGGGTT ACTAAAATGG ATTGTCGTGG chrV-NC_003076:206021-20 11 7.71e-05 CAAAAATATT CCATAAATGG TTAACACAAA chrV-NC_003076:23785222- 63 7.71e-05 GCAAATGAAC CCATAAATGG AAAGAAAACT chrIV-NC_003075:13193728 36 7.71e-05 GATTCAGTAT ACTAAAAAGG AAACTCCTAC chrII-NC_003071:8692385- 46 7.71e-05 GATTCGATTT CCCCAAATGG CAAAAGAAAA chrIII-NC_003074:7297913 55 8.39e-05 TGGAAGAAAG CCATAAAAGG AAGCTTTCTT chrIV-NC_003075:10386503 28 9.06e-05 TAATTATATT CCAAATAAGG AAAGTATGGA chrII-NC_003071:519724-5 51 9.06e-05 GAAGAAGAAA ACAAAAGTAG AAAATAGAAA chrIII-NC_003074:9812872 61 9.06e-05 AGCCTTTATT GCCAAAGGGG AGATATAGTA chrV-NC_003076:17363447- 69 9.83e-05 AAAATCTCAG CCGCAAATGG ATGTCTCACC chrV-NC_003076:22997202- 63 1.05e-04 AATAAAATTT CCCCAAAGGG ACCATTGATC chrI-NC_003070:26575417- 14 1.05e-04 TAAATTTCAC ACCAAAGTAG TCCGACGGAT chrIII-NC_003074:1797331 67 1.05e-04 CTCCAATTAT ACCAAAGTAG CCATGACTAG chrV-NC_003076:7265888-7 44 1.16e-04 TTAAACTTTG CCGTAAATGG GTCTGTTTGG chrV-NC_003076:13939328- 46 1.16e-04 TAGAAAATAA CCTAATGTGG TAATATAGGA chrIII-NC_003074:1847014 75 1.16e-04 AAATTCCTTA CCTCAAATGG AAAACCCTTA chrV-NC_003076:23165445- 62 1.27e-04 AGTCATTGAA CCTAATGAGG TAAACGTAGG chrIV-NC_003075:5155510- 61 1.27e-04 TCACTTGTTG ACAAAAAAAG AAAAAGAAAG chrIV-NC_003075:17150895 48 1.27e-04 CACTCTATCT CTAAAAGAGG CAACCAAACA chrII-NC_003071:12774547 60 1.27e-04 AAGGGGAAAT ACAAAAGGAG ACCTTTGTGG chrIII-NC_003074:4146195 38 1.27e-04 GAGAGAGAAA ACAAAAAAAG TAAAAGCTTC chrIII-NC_003074:2329158 28 1.27e-04 GAAACATAAA ACAAAAAAAG AAATATCTAA chrIV-NC_003075:10381216 42 1.36e-04 TATCAAATTA CCTTAAATGG GTTCATAAAG chrI-NC_003070:567094-56 88 1.36e-04 AGCCGACGCG CCAAAAGTGA TTC chrII-NC_003071:14209292 8 1.36e-04 TTAAATG ACGAAAGTAG ACATCTCTGT chrV-NC_003076:20011316- 53 1.48e-04 AAGACCCGAC ACGAAAGAAG GTGTTCTTTT chrI-NC_003070:26727714- 64 1.48e-04 CTCGAATAAA CTCAAAGAGG TGACAGCCGT chrII-NC_003071:8430434- 50 1.48e-04 TTACTTCTTT CCTTAAAAGG AAAAGAAAAT chrII-NC_003071:14735538 57 1.48e-04 CCTTAGAAAA CCAAAACGGG AAAAGAAAAA chrIII-NC_003074:2012117 40 1.48e-04 ACTTGAGTTA CTAAAAATGG AAAGTATTGC chrV-NC_003076:23661495- 77 1.60e-04 ATAAAATATA GCAAAAGTAG CAAAGATTAA chrI-NC_003070:23267188- 50 1.60e-04 CTTTTCTTAG CTAAAAAAGG AAGGTATACG chrV-NC_003076:21669324- 45 1.74e-04 GTTTTATTTC CCGAATAGGG AATGTTAAGG chrV-NC_003076:3833394-3 6 1.74e-04 TGTGT CCAAAAATGA GGAAAAGGAA chrII-NC_003071:432261-4 72 1.74e-04 AAAATATATA CCCAAAGAGA GAGCTAGAGA chrIV-NC_003075:15054453 53 1.89e-04 AAAATAGTGA CTGAAAGAGG AAAAACATAT chrIV-NC_003075:18361675 44 1.89e-04 ACCTAAATGT GCCAAAGTAG ACAAGAACCC chrI-NC_003070:1714035-1 49 1.89e-04 AAATTCAAAG ACGAAAAAAG CAAAAAGTGG chrV-NC_003076:26805576- 34 2.05e-04 CTGTTTCTTT CCCTAAGTAG TAATTACAAA chrI-NC_003070:9269999-9 2 2.05e-04 A CCCAAAATGA AATGAAAGAA chrI-NC_003070:20954134- 16 2.05e-04 GGATATATAG ACTAAAATAG GTCGGTGGAC chrIV-NC_003075:18318568 46 2.26e-04 GTGGAGATAA CCGAAACGGG AAAGTTCTAA chrI-NC_003070:28378932- 25 2.26e-04 AATACTTTTT CCATAAATAG TAGTATACAT chrII-NC_003071:8340177- 65 2.26e-04 ACTTTTTTAG GCAAAAAAAG TTCAAAAAGA chrV-NC_003076:229782-22 59 2.60e-04 TAACATCTCT CCAAATAAAG TTTGTCTGTT chrV-NC_003076:25908024- 4 2.60e-04 TCT CTTAAAATGG GCCCGTAAAG chrI-NC_003070:11067773- 43 2.82e-04 ATAGATTGTT ACAAATATGG AAACCTAATA chrI-NC_003070:26059448- 89 2.82e-04 TTGTGCGTAC ACGCAAGAGG GA chrII-NC_003071:18423065 24 2.82e-04 ATTACAACCG CCCAAAAGGA AAGTAGCTAT chrIII-NC_003074:2267043 41 3.00e-04 TTATTTCCCG GCTAAAGAAG GAGGATGTCT chrII-NC_003071:17791516 50 3.63e-04 TCCTCCATTT CCACATGAGG AAAGAGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:9480415-9 6.8e-07 41_[+2]_49 chrV-NC_003076:17073608- 1.4e-06 44_[+2]_46 chrIV-NC_003075:14813525 1.4e-06 54_[+2]_36 chrI-NC_003070:27713510- 1.4e-06 49_[+2]_41 chrI-NC_003070:18690442- 1.4e-06 52_[+2]_38 chrII-NC_003071:15206977 1.4e-06 42_[+2]_48 chrV-NC_003076:3048856-3 3.3e-06 39_[+2]_51 chrV-NC_003076:16563593- 3.3e-06 46_[+2]_44 chrII-NC_003071:14956317 3.3e-06 41_[+2]_49 chrII-NC_003071:383333-3 3.3e-06 43_[+2]_47 chrIII-NC_003074:4732994 3.3e-06 38_[+2]_52 chrV-NC_003076:24415567- 4.9e-06 31_[+2]_59 chrV-NC_003076:22388451- 4.9e-06 5_[+2]_85 chrI-NC_003070:26011675- 4.9e-06 40_[+2]_50 chrII-NC_003071:17819844 4.9e-06 2_[+2]_88 chrV-NC_003076:3864674-3 6e-06 45_[+2]_45 chrV-NC_003076:9133297-9 6e-06 75_[+2]_15 chrI-NC_003070:9101220-9 6e-06 70_[+2]_20 chrV-NC_003076:792888-79 7.3e-06 45_[+2]_45 chrV-NC_003076:2284163-2 7.3e-06 51_[+2]_39 chrIV-NC_003075:15205290 7.3e-06 46_[+2]_44 chrI-NC_003070:27292918- 7.3e-06 42_[+2]_48 chrI-NC_003070:10679066- 8.6e-06 53_[+2]_37 chrII-NC_003071:12941145 8.6e-06 55_[+2]_35 chrV-NC_003076:1826857-1 1e-05 41_[+2]_49 chrIV-NC_003075:12043858 1e-05 49_[+2]_41 chrI-NC_003070:7930462-7 1.1e-05 41_[+2]_49 chrIII-NC_003074:5954468 1.1e-05 78_[+2]_12 chrIII-NC_003074:2058364 1.1e-05 34_[+2]_56 chrI-NC_003070:23075622- 1.2e-05 76_[+2]_14 chrII-NC_003071:9577581- 1.2e-05 49_[+2]_41 chrIII-NC_003074:1136472 1.2e-05 40_[+2]_50 chrIII-NC_003074:7989294 1.2e-05 81_[+2]_9 chrV-NC_003076:3865681-3 1.4e-05 14_[+2]_76 chrV-NC_003076:15711909- 1.4e-05 79_[+2]_11 chrI-NC_003070:29788413- 1.4e-05 45_[+2]_45 chrI-NC_003070:21192322- 1.4e-05 45_[+2]_45 chrII-NC_003071:16504451 1.4e-05 48_[+2]_42 chrI-NC_003070:20723351- 1.6e-05 9_[+2]_81 chrIV-NC_003075:6794586- 1.7e-05 67_[+2]_23 chrIII-NC_003074:2123354 1.7e-05 21_[+2]_69 chrI-NC_003070:11630791- 1.9e-05 42_[+2]_48 chrIV-NC_003075:8435496- 2.3e-05 2_[+2]_88 chrII-NC_003071:18811109 2.3e-05 52_[+2]_38 chrIII-NC_003074:5299080 2.3e-05 60_[+2]_30 chrIII-NC_003074:5121290 2.6e-05 60_[+2]_30 chrV-NC_003076:21763572- 3.1e-05 76_[+2]_14 chrIV-NC_003075:11604849 3.1e-05 38_[+2]_52 chrI-NC_003070:17506712- 3.1e-05 11_[+2]_79 chrII-NC_003071:14224191 3.1e-05 29_[+2]_61 chrII-NC_003071:9037903- 3.1e-05 19_[+2]_71 chrV-NC_003076:26042706- 3.6e-05 6_[+2]_84 chrV-NC_003076:4221058-4 3.6e-05 89_[+2]_1 chrI-NC_003070:26581149- 3.6e-05 49_[+2]_41 chrI-NC_003070:25046712- 4e-05 87_[+2]_3 chrI-NC_003070:28673890- 4e-05 79_[+2]_11 chrI-NC_003070:6459718-6 4e-05 46_[+2]_44 chrI-NC_003070:10726311- 4e-05 34_[+2]_56 chrI-NC_003070:28117313- 4.5e-05 42_[+2]_48 chrI-NC_003070:9950825-9 5.1e-05 90_[+2] chrV-NC_003076:6320620-6 5.6e-05 71_[+2]_19 chrI-NC_003070:12455681- 5.6e-05 33_[+2]_57 chrIII-NC_003074:5236746 5.6e-05 86_[+2]_4 chrV-NC_003076:20898801- 6.4e-05 50_[+2]_40 chrI-NC_003070:4600560-4 7e-05 34_[+2]_56 chrI-NC_003070:11373372- 7e-05 51_[+2]_39 chrI-NC_003070:8595088-8 7e-05 52_[+2]_38 chrV-NC_003076:206021-20 7.7e-05 10_[+2]_80 chrV-NC_003076:23785222- 7.7e-05 62_[+2]_28 chrIV-NC_003075:13193728 7.7e-05 35_[+2]_55 chrII-NC_003071:8692385- 7.7e-05 45_[+2]_45 chrIII-NC_003074:7297913 8.4e-05 54_[+2]_36 chrIV-NC_003075:10386503 9.1e-05 27_[+2]_63 chrII-NC_003071:519724-5 9.1e-05 50_[+2]_40 chrIII-NC_003074:9812872 9.1e-05 60_[+2]_30 chrV-NC_003076:17363447- 9.8e-05 68_[+2]_22 chrV-NC_003076:22997202- 0.0001 62_[+2]_28 chrI-NC_003070:26575417- 0.0001 13_[+2]_77 chrIII-NC_003074:1797331 0.0001 66_[+2]_24 chrV-NC_003076:7265888-7 0.00012 43_[+2]_47 chrV-NC_003076:13939328- 0.00012 45_[+2]_45 chrIII-NC_003074:1847014 0.00012 74_[+2]_16 chrV-NC_003076:23165445- 0.00013 61_[+2]_29 chrIV-NC_003075:5155510- 0.00013 60_[+2]_30 chrIV-NC_003075:17150895 0.00013 47_[+2]_43 chrII-NC_003071:12774547 0.00013 59_[+2]_31 chrIII-NC_003074:4146195 0.00013 37_[+2]_53 chrIII-NC_003074:2329158 0.00013 27_[+2]_63 chrIV-NC_003075:10381216 0.00014 41_[+2]_49 chrI-NC_003070:567094-56 0.00014 87_[+2]_3 chrII-NC_003071:14209292 0.00014 7_[+2]_83 chrV-NC_003076:20011316- 0.00015 52_[+2]_38 chrI-NC_003070:26727714- 0.00015 63_[+2]_27 chrII-NC_003071:8430434- 0.00015 49_[+2]_41 chrII-NC_003071:14735538 0.00015 56_[+2]_34 chrIII-NC_003074:2012117 0.00015 39_[+2]_51 chrV-NC_003076:23661495- 0.00016 76_[+2]_14 chrI-NC_003070:23267188- 0.00016 49_[+2]_41 chrV-NC_003076:21669324- 0.00017 44_[+2]_46 chrV-NC_003076:3833394-3 0.00017 5_[+2]_85 chrII-NC_003071:432261-4 0.00017 71_[+2]_19 chrIV-NC_003075:15054453 0.00019 52_[+2]_38 chrIV-NC_003075:18361675 0.00019 43_[+2]_47 chrI-NC_003070:1714035-1 0.00019 48_[+2]_42 chrV-NC_003076:26805576- 0.00021 33_[+2]_57 chrI-NC_003070:9269999-9 0.00021 1_[+2]_89 chrI-NC_003070:20954134- 0.00021 15_[+2]_75 chrIV-NC_003075:18318568 0.00023 45_[+2]_45 chrI-NC_003070:28378932- 0.00023 24_[+2]_66 chrII-NC_003071:8340177- 0.00023 64_[+2]_26 chrV-NC_003076:229782-22 0.00026 58_[+2]_32 chrV-NC_003076:25908024- 0.00026 3_[+2]_87 chrI-NC_003070:11067773- 0.00028 42_[+2]_48 chrI-NC_003070:26059448- 0.00028 88_[+2]_2 chrII-NC_003071:18423065 0.00028 23_[+2]_67 chrIII-NC_003074:2267043 0.0003 40_[+2]_50 chrII-NC_003071:17791516 0.00036 49_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=10 seqs=117 chrV-NC_003076:9480415-9 ( 42) CCAAAAGTGG 1 chrV-NC_003076:17073608- ( 45) CCAAAAGAGG 1 chrIV-NC_003075:14813525 ( 55) CCAAAAGAGG 1 chrI-NC_003070:27713510- ( 50) CCAAAAGAGG 1 chrI-NC_003070:18690442- ( 53) CCAAAAGAGG 1 chrII-NC_003071:15206977 ( 43) CCAAAAGAGG 1 chrV-NC_003076:3048856-3 ( 40) CCAAAAATGG 1 chrV-NC_003076:16563593- ( 47) CCAAAAATGG 1 chrII-NC_003071:14956317 ( 42) CCAAAAATGG 1 chrII-NC_003071:383333-3 ( 44) CCAAAAATGG 1 chrIII-NC_003074:4732994 ( 39) CCAAAAATGG 1 chrV-NC_003076:24415567- ( 32) CCAAAAAAGG 1 chrV-NC_003076:22388451- ( 6) CCAAAAAAGG 1 chrI-NC_003070:26011675- ( 41) CCAAAAAAGG 1 chrII-NC_003071:17819844 ( 3) CCAAAAAAGG 1 chrV-NC_003076:3864674-3 ( 46) CCGAAAGTGG 1 chrV-NC_003076:9133297-9 ( 76) CCGAAAGTGG 1 chrI-NC_003070:9101220-9 ( 71) CCGAAAGTGG 1 chrV-NC_003076:792888-79 ( 46) CCCAAAGGGG 1 chrV-NC_003076:2284163-2 ( 52) CCCAAAGGGG 1 chrIV-NC_003075:15205290 ( 47) CCCAAAAAGG 1 chrI-NC_003070:27292918- ( 43) CCCAAAGGGG 1 chrI-NC_003070:10679066- ( 54) CCTAAAGTGG 1 chrII-NC_003071:12941145 ( 56) CCAAAAAGGG 1 chrV-NC_003076:1826857-1 ( 42) CCTAAAGAGG 1 chrIV-NC_003075:12043858 ( 50) CCGAAAATGG 1 chrI-NC_003070:7930462-7 ( 42) CCGAAAAAGG 1 chrIII-NC_003074:5954468 ( 79) CCGAAAAAGG 1 chrIII-NC_003074:2058364 ( 35) CCCAAAAGGG 1 chrI-NC_003070:23075622- ( 77) CCTAAAATGG 1 chrII-NC_003071:9577581- ( 50) CCTAAAATGG 1 chrIII-NC_003074:1136472 ( 41) CCTAAAATGG 1 chrIII-NC_003074:7989294 ( 82) CCTAAAATGG 1 chrV-NC_003076:3865681-3 ( 15) CCTAAAAAGG 1 chrV-NC_003076:15711909- ( 80) CCTAAAGGGG 1 chrI-NC_003070:29788413- ( 46) CCTAAAGGGG 1 chrI-NC_003070:21192322- ( 46) CCTAAAAAGG 1 chrII-NC_003071:16504451 ( 49) CCTAAAGGGG 1 chrI-NC_003070:20723351- ( 10) CCAAAAGTAG 1 chrIV-NC_003075:6794586- ( 68) CCAAAAGAAG 1 chrIII-NC_003074:2123354 ( 22) CCAAAAGAAG 1 chrI-NC_003070:11630791- ( 43) ACAAAAGTGG 1 chrIV-NC_003075:8435496- ( 3) CCAAAAATAG 1 chrII-NC_003071:18811109 ( 53) CCAAAAATAG 1 chrIII-NC_003074:5299080 ( 61) CCCAAAGAAG 1 chrIII-NC_003074:5121290 ( 61) CCAAAAGGAG 1 chrV-NC_003076:21763572- ( 77) ACCAAAGAGG 1 chrIV-NC_003075:11604849 ( 39) ACCAAAGAGG 1 chrI-NC_003070:17506712- ( 12) ACAAAAATGG 1 chrII-NC_003071:14224191 ( 30) ACAAAAATGG 1 chrII-NC_003071:9037903- ( 20) ACAAAAATGG 1 chrV-NC_003076:26042706- ( 7) CCCAAAAAAG 1 chrV-NC_003076:4221058-4 ( 90) ACAAAAAAGG 1 chrI-NC_003070:26581149- ( 50) CCCAAAGGAG 1 chrI-NC_003070:25046712- ( 88) ACGAAAGTGG 1 chrI-NC_003070:28673890- ( 80) ACCAAAATGG 1 chrI-NC_003070:6459718-6 ( 47) ACGAAAGTGG 1 chrI-NC_003070:10726311- ( 35) CCAAAAAGAG 1 chrI-NC_003070:28117313- ( 43) CCTAAAGAAG 1 chrI-NC_003070:9950825-9 ( 91) CCCAAAAGAG 1 chrV-NC_003076:6320620-6 ( 72) GCAAAAGAGG 1 chrI-NC_003070:12455681- ( 34) ACTAAAGAGG 1 chrIII-NC_003074:5236746 ( 87) CCTAAAATAG 1 chrV-NC_003076:20898801- ( 51) CCAAATGTGG 1 chrI-NC_003070:4600560-4 ( 35) GCAAAAATGG 1 chrI-NC_003070:11373372- ( 52) CCGAAAAGAG 1 chrI-NC_003070:8595088-8 ( 53) ACTAAAATGG 1 chrV-NC_003076:206021-20 ( 11) CCATAAATGG 1 chrV-NC_003076:23785222- ( 63) CCATAAATGG 1 chrIV-NC_003075:13193728 ( 36) ACTAAAAAGG 1 chrII-NC_003071:8692385- ( 46) CCCCAAATGG 1 chrIII-NC_003074:7297913 ( 55) CCATAAAAGG 1 chrIV-NC_003075:10386503 ( 28) CCAAATAAGG 1 chrII-NC_003071:519724-5 ( 51) ACAAAAGTAG 1 chrIII-NC_003074:9812872 ( 61) GCCAAAGGGG 1 chrV-NC_003076:17363447- ( 69) CCGCAAATGG 1 chrV-NC_003076:22997202- ( 63) CCCCAAAGGG 1 chrI-NC_003070:26575417- ( 14) ACCAAAGTAG 1 chrIII-NC_003074:1797331 ( 67) ACCAAAGTAG 1 chrV-NC_003076:7265888-7 ( 44) CCGTAAATGG 1 chrV-NC_003076:13939328- ( 46) CCTAATGTGG 1 chrIII-NC_003074:1847014 ( 75) CCTCAAATGG 1 chrV-NC_003076:23165445- ( 62) CCTAATGAGG 1 chrIV-NC_003075:5155510- ( 61) ACAAAAAAAG 1 chrIV-NC_003075:17150895 ( 48) CTAAAAGAGG 1 chrII-NC_003071:12774547 ( 60) ACAAAAGGAG 1 chrIII-NC_003074:4146195 ( 38) ACAAAAAAAG 1 chrIII-NC_003074:2329158 ( 28) ACAAAAAAAG 1 chrIV-NC_003075:10381216 ( 42) CCTTAAATGG 1 chrI-NC_003070:567094-56 ( 88) CCAAAAGTGA 1 chrII-NC_003071:14209292 ( 8) ACGAAAGTAG 1 chrV-NC_003076:20011316- ( 53) ACGAAAGAAG 1 chrI-NC_003070:26727714- ( 64) CTCAAAGAGG 1 chrII-NC_003071:8430434- ( 50) CCTTAAAAGG 1 chrII-NC_003071:14735538 ( 57) CCAAAACGGG 1 chrIII-NC_003074:2012117 ( 40) CTAAAAATGG 1 chrV-NC_003076:23661495- ( 77) GCAAAAGTAG 1 chrI-NC_003070:23267188- ( 50) CTAAAAAAGG 1 chrV-NC_003076:21669324- ( 45) CCGAATAGGG 1 chrV-NC_003076:3833394-3 ( 6) CCAAAAATGA 1 chrII-NC_003071:432261-4 ( 72) CCCAAAGAGA 1 chrIV-NC_003075:15054453 ( 53) CTGAAAGAGG 1 chrIV-NC_003075:18361675 ( 44) GCCAAAGTAG 1 chrI-NC_003070:1714035-1 ( 49) ACGAAAAAAG 1 chrV-NC_003076:26805576- ( 34) CCCTAAGTAG 1 chrI-NC_003070:9269999-9 ( 2) CCCAAAATGA 1 chrI-NC_003070:20954134- ( 16) ACTAAAATAG 1 chrIV-NC_003075:18318568 ( 46) CCGAAACGGG 1 chrI-NC_003070:28378932- ( 25) CCATAAATAG 1 chrII-NC_003071:8340177- ( 65) GCAAAAAAAG 1 chrV-NC_003076:229782-22 ( 59) CCAAATAAAG 1 chrV-NC_003076:25908024- ( 4) CTTAAAATGG 1 chrI-NC_003070:11067773- ( 43) ACAAATATGG 1 chrI-NC_003070:26059448- ( 89) ACGCAAGAGG 1 chrII-NC_003071:18423065 ( 24) CCCAAAAGGA 1 chrIII-NC_003074:2267043 ( 41) GCTAAAGAAG 1 chrII-NC_003071:17791516 ( 50) CCACATGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 10.7394 E= 9.2e-054 -51 196 -163 -1351 -1351 236 -1351 -262 49 9 -27 -62 148 -185 -1351 -220 166 -1351 -1351 -1351 156 -1351 -1351 -220 77 -343 126 -1351 29 -1351 -11 50 -21 -1351 197 -1351 -288 -1351 237 -1351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 117 E= 9.2e-054 0.222222 0.717949 0.059829 0.000000 0.000000 0.948718 0.000000 0.051282 0.444444 0.196581 0.153846 0.205128 0.880342 0.051282 0.000000 0.068376 1.000000 0.000000 0.000000 0.000000 0.931624 0.000000 0.000000 0.068376 0.538462 0.017094 0.444444 0.000000 0.384615 0.000000 0.170940 0.444444 0.273504 0.000000 0.726496 0.000000 0.042735 0.000000 0.957265 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [CA]C[AT]AAA[AG][TA][GA]G -------------------------------------------------------------------------------- Time 105.73 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 10 sites = 93 llr = 796 E-value = 1.2e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::511:12:: pos.-specific C a615::2::: probability G :::::::3a8 matrix T :4449a85:2 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * Relative 1.5 * * ** Entropy 1.2 ** ** ** (12.3 bits) 1.0 ** ** ** 0.7 ** *** ** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CCACTTTTGG consensus TTT G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrIII-NC_003074:2315534 79 3.92e-07 AAACTGCATT CCACTTTGGG AACCAGGTAA chrIV-NC_003075:17006713 62 1.06e-06 TCTTGTTGAT CCACTTTTGG TTGTTGATAT chrI-NC_003070:6916711-6 70 1.06e-06 ACACGTTATT CCACTTTTGG CTCCTTTGCT chrII-NC_003071:19071050 68 1.06e-06 GCACTAATTT CCACTTTTGG GTAGCTTAAA chrV-NC_003076:1855815-1 49 2.77e-06 ACGAAGGTTA CCATTTTGGG CTAAAAGTTA chrV-NC_003076:10455505- 43 4.57e-06 TCTAGCTTTT CTACTTTGGG AGATGATAGA chrIV-NC_003075:9319710- 45 4.57e-06 TTCTGGTTAG CTACTTTGGG ATTAGTTTTT chrI-NC_003070:26059448- 13 4.57e-06 TTATTCTTTA CCATTTTTGG GTTTGGTCTA chrII-NC_003071:11871421 42 4.57e-06 ATTTTTGTTT CTACTTTGGG AAGCTTTCCG chrII-NC_003071:17808033 36 4.57e-06 AATCATCGGT CTACTTTGGG AACAAACACA chrIV-NC_003075:17322266 89 5.46e-06 TTTCTCTTTT CCTTTTTGGG TC chrIII-NC_003074:7507408 43 5.46e-06 TCTTTCTTTC CCTTTTTGGG TGTCATCTCT chrV-NC_003076:26042706- 28 6.82e-06 TAACATGCTT CTACTTTTGG CAAAGAAAAA chrI-NC_003070:7142957-7 50 6.82e-06 ATGTACCCTT CCACTTCGGG AATCCATTAT chrII-NC_003071:19013765 43 6.82e-06 CACTCTCTGT CTACTTTTGG AAATGTTTTA chrV-NC_003076:1750908-1 76 9.67e-06 CTTAATCAAG CCTTTTTTGG TTTCTTTTCA chrIV-NC_003075:16154659 57 9.67e-06 CTTCTTCTTT CTTCTTTGGG AATATTTAAC chrI-NC_003070:4904674-4 70 9.67e-06 AGACTTTAGT CCTTTTTTGG TTTCTTGTAA chrII-NC_003071:18414202 37 9.67e-06 ACTATTTTTG CCCCTTTTGG CTACTTGACT chrII-NC_003071:16559073 52 9.67e-06 AACGAGATTA CCACTTTAGG AAGTGCTATT chrIII-NC_003074:2048555 85 9.67e-06 AAAAAAATAT CCCCTTTTGG GCTAGC chrV-NC_003076:26562589- 45 1.14e-05 TGAATGTTTG CTTCTTTTGG AGTTTGTGGT chrII-NC_003071:14331359 42 1.14e-05 TGTTTCCTAT CTTCTTTTGG AAAGTCTCTC chrI-NC_003070:6174588-6 6 1.32e-05 GGTTA CTATTTTGGG CGGGCTCACA chrI-NC_003070:1188280-1 1 1.32e-05 . CTATTTTGGG TATGCAAAGT chrII-NC_003071:1136739- 49 1.40e-05 TTCTTTTGTG CCTCTTCTGG TTTGTAATCT chrIII-NC_003074:5247210 50 1.40e-05 TAATTACATT CCTCTTCTGG ATAATAAGTA chrI-NC_003070:7930462-7 19 1.63e-05 ATGAGACTTT CTATTTTTGG GAGTAGAGAT chrI-NC_003070:3571887-3 31 1.96e-05 ATAATAATTT CCATTTTAGG CAAGAAACAA chrIII-NC_003074:1928100 40 1.96e-05 ACGGTTACTG CTCCTTTGGG AATAGTAGAT chrV-NC_003076:23147444- 9 2.20e-05 CCCTTTTA CCACTTTGGT CAATTAGTCT chrIII-NC_003074:6250572 51 2.20e-05 CGTTACGCAT CCAATTTGGG TAACCCGAGG chrIII-NC_003074:1373635 50 2.20e-05 TTTCTCCCTC CCATTTCTGG TAAAAATTGT chrV-NC_003076:19273677- 25 2.62e-05 TCACGTGAAC CTCCTTTTGG GGTCCTACTT chrV-NC_003076:22997202- 34 2.62e-05 CATGACTTGT CTTTTTTTGG TTTCTTCCCA chrV-NC_003076:23670284- 62 2.62e-05 AAGTAAAACA CTCCTTTTGG GGAAATAAAT chrII-NC_003071:19298962 85 2.62e-05 CACAATTAGG CTTTTTTTGG CCAAGT chrV-NC_003076:21855079- 36 3.07e-05 TATTAATATT CCTTTTTAGG TAAGAAAACA chrI-NC_003070:10726311- 78 3.07e-05 CGAAAGACTT CCACTTTTGT CCTTTTTTTT chrII-NC_003071:11925629 62 3.07e-05 GTTGAAACTG CCACTTTTGT CAGATTTATT chrI-NC_003070:25228955- 44 3.37e-05 GATGAGTTTA CTTCTTCGGG AAAGTGGTGT chrII-NC_003071:17446382 50 3.37e-05 CAATCTTTTA CCTCTTTGGT ATTGAACATT chrIII-NC_003074:2293953 46 3.37e-05 TCCTCTTCTG CCTCTTTGGT GATTCTTAGC chrII-NC_003071:18813111 60 3.48e-05 ATTATATTCA CTTCTTTAGG TGTTTTTTTT chrIII-NC_003074:2242616 34 3.88e-05 CTTGGCTTAT CTTCTTCTGG TTATCTACAC chrI-NC_003070:19848599- 61 4.10e-05 ACCTTTTTTC CCATTTTGGT TTCATCCTTT chrIII-NC_003074:5293166 36 4.10e-05 TGAGAGATTT CTATTTCGGG AAGCTATTTC chrV-NC_003076:26253392- 50 4.57e-05 GACAACCATC CCCTTTCGGG TGGAGCCAGA chrV-NC_003076:25504492- 48 4.57e-05 CTGTAAAGTT CTATTTTAGG TAACCCTACA chrV-NC_003076:4451032-4 40 4.57e-05 TACCTTTTTG CCACATTTGG AGGATTTTGT chrI-NC_003070:9267178-9 49 4.57e-05 TTCACGTCAT CTCTTTTTGG AAACTCCAAA chrV-NC_003076:21045187- 36 5.21e-05 TGTGTATGTG CCCTTTTAGG GCAACAATTA chrV-NC_003076:26723094- 81 5.21e-05 ACTCCGTATC CCATTTTTGT TTGATACTCA chrI-NC_003070:5086108-5 74 5.73e-05 TACTAGTTTG CCAGTTTTGG AGCCCCAAAC chrI-NC_003070:3101296-3 91 5.73e-05 GGTACTAATC CCATTTCAGG chrI-NC_003070:3287515-3 6 5.73e-05 TATCT CCCATTTGGG TAGTTACGGA chrIII-NC_003074:5121290 26 5.73e-05 GCCGCTAAAA CCATTTCAGG CTTTGACTGT chrV-NC_003076:22388451- 61 6.59e-05 AAAGTGAATG CTAATTTTGG CACGTACCCC chrIII-NC_003074:8238743 76 6.59e-05 ATATCATCTT CTAATTTTGG CAGAATCTTT chrIV-NC_003075:17395836 73 7.68e-05 CCCCTTTGTC CCTTTTTTGT CATCTCCTTT chrIII-NC_003074:1880983 15 7.68e-05 AATGGCAATC CCACTTTAGT GTTTAACCAT chrIII-NC_003074:2263425 77 7.68e-05 ACCCCTTGAG CTTTTTCTGG CTTGTGACGG chrII-NC_003071:18811109 24 8.78e-05 TCATCCTTTA CTTATTTTGG AAAAAAGCCT chrIV-NC_003075:17319872 24 9.42e-05 TTAGAGATTT CCTATTTAGG AAACGAGACG chrI-NC_003070:5004165-5 82 9.42e-05 ACAAGAATTA CCTTATTGGG ATTTGGGAT chrII-NC_003071:16221745 69 9.42e-05 CAAAGCTTAT CCTCTTTAGT CTTTACTCTT chrIII-NC_003074:6158020 20 9.42e-05 TCAGACTCCT CCTATTTAGG TTTTGACCCA chrV-NC_003076:17363447- 87 1.00e-04 GGATGTCTCA CCATTTATGG TAAT chrI-NC_003070:983778-98 59 1.00e-04 ATAAAACCTT CTACATTTGG TATTGCTACA chrIII-NC_003074:2232815 35 1.00e-04 TTTTCTTTAG CTACTTAGGG AATGACGTTT chrIII-NC_003074:1791000 44 1.00e-04 TTTGAAGTTT CTACATTTGG AAAATTCAAG chrIII-NC_003074:2037912 44 1.10e-04 ATCGGCCTTT CCTTATTTGG TAAGACTAAA chrV-NC_003076:13936253- 2 1.22e-04 A CTTTTTTGGT CAAACTCTGT chrV-NC_003076:4984734-4 19 1.32e-04 ATAATTTAAT CCAATTTGGT AAGAAGATTT chrI-NC_003070:772515-77 72 1.32e-04 CATGCGGCAC CCATTTCTGT GATATCTCAA chrII-NC_003071:18609166 44 1.32e-04 TATTTTATTC CCAATTTGGT ATTCTTCTTC chrIII-NC_003074:4732994 71 1.32e-04 ACTTAGTCTT CTTCTTAGGG GTATTAGCGT chrV-NC_003076:8004910-8 78 1.46e-04 CAAGAATTTG CCATGTTTGG CTATATAAGT chrIV-NC_003075:8435496- 44 1.46e-04 TGTTTGTATA CTACTTTAGT CTAGATGGAC chrI-NC_003070:28366917- 39 1.46e-04 GATCTTTTTA CTATATTGGG TATTTGTGTA chrII-NC_003071:9523112- 64 1.46e-04 TCTCTTCTTC CTCCTTTTGT CATATTACTT chrV-NC_003076:26533069- 44 1.60e-04 AAGATTGTTT CCTTGTTGGG GTCCTGGTTC chrV-NC_003076:6381170-6 13 1.60e-04 TTGTCTTTGT CTTGTTTTGG ACTATATAAT chrV-NC_003076:2939835-2 12 1.60e-04 ACCAATCTCA CCTTTTTAGT AACTTGAATT chrI-NC_003070:8305339-8 18 1.60e-04 ATTGACCCAT CCATTTTCGG GCCATGTTTG chrIII-NC_003074:4146195 54 1.71e-04 AAAGTAAAAG CTTCTTCGGT CTGGATATTT chrV-NC_003076:16337674- 41 1.93e-04 TATTGTGTCT CTATTTATGG AAGTGTAAAG chrV-NC_003076:24507183- 27 1.93e-04 AAAAAGTGGC CTATTTATGG GAAGAGAATC chrII-NC_003071:14485962 18 1.93e-04 CGATCTGAGA CCTATTTTGT CTAGAATTGG chrII-NC_003071:16641452 7 2.19e-04 GGTCCC CCTTATTAGG CTACATATGT chrI-NC_003070:567094-56 33 2.35e-04 CAGTTGTTTA CCCGTTCGGG CATGGTTTGA chrIV-NC_003075:17397905 48 2.69e-04 GCAGTAGTTT CCACTTGAGG AAAGCAACAT chrV-NC_003076:26641454- 20 3.20e-04 AAAAAATTTA TCACTTTTGG GAGAAGTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII-NC_003074:2315534 3.9e-07 78_[+3]_12 chrIV-NC_003075:17006713 1.1e-06 61_[+3]_29 chrI-NC_003070:6916711-6 1.1e-06 69_[+3]_21 chrII-NC_003071:19071050 1.1e-06 67_[+3]_23 chrV-NC_003076:1855815-1 2.8e-06 48_[+3]_42 chrV-NC_003076:10455505- 4.6e-06 42_[+3]_48 chrIV-NC_003075:9319710- 4.6e-06 44_[+3]_46 chrI-NC_003070:26059448- 4.6e-06 12_[+3]_78 chrII-NC_003071:11871421 4.6e-06 41_[+3]_49 chrII-NC_003071:17808033 4.6e-06 35_[+3]_55 chrIV-NC_003075:17322266 5.5e-06 88_[+3]_2 chrIII-NC_003074:7507408 5.5e-06 42_[+3]_48 chrV-NC_003076:26042706- 6.8e-06 27_[+3]_63 chrI-NC_003070:7142957-7 6.8e-06 49_[+3]_41 chrII-NC_003071:19013765 6.8e-06 42_[+3]_48 chrV-NC_003076:1750908-1 9.7e-06 75_[+3]_15 chrIV-NC_003075:16154659 9.7e-06 56_[+3]_34 chrI-NC_003070:4904674-4 9.7e-06 69_[+3]_21 chrII-NC_003071:18414202 9.7e-06 36_[+3]_54 chrII-NC_003071:16559073 9.7e-06 51_[+3]_39 chrIII-NC_003074:2048555 9.7e-06 84_[+3]_6 chrV-NC_003076:26562589- 1.1e-05 44_[+3]_46 chrII-NC_003071:14331359 1.1e-05 41_[+3]_49 chrI-NC_003070:6174588-6 1.3e-05 5_[+3]_85 chrI-NC_003070:1188280-1 1.3e-05 [+3]_90 chrII-NC_003071:1136739- 1.4e-05 48_[+3]_42 chrIII-NC_003074:5247210 1.4e-05 49_[+3]_41 chrI-NC_003070:7930462-7 1.6e-05 18_[+3]_72 chrI-NC_003070:3571887-3 2e-05 30_[+3]_60 chrIII-NC_003074:1928100 2e-05 39_[+3]_51 chrV-NC_003076:23147444- 2.2e-05 8_[+3]_82 chrIII-NC_003074:6250572 2.2e-05 50_[+3]_40 chrIII-NC_003074:1373635 2.2e-05 49_[+3]_41 chrV-NC_003076:19273677- 2.6e-05 24_[+3]_66 chrV-NC_003076:22997202- 2.6e-05 33_[+3]_57 chrV-NC_003076:23670284- 2.6e-05 61_[+3]_29 chrII-NC_003071:19298962 2.6e-05 84_[+3]_6 chrV-NC_003076:21855079- 3.1e-05 35_[+3]_55 chrI-NC_003070:10726311- 3.1e-05 77_[+3]_13 chrII-NC_003071:11925629 3.1e-05 61_[+3]_29 chrI-NC_003070:25228955- 3.4e-05 43_[+3]_47 chrII-NC_003071:17446382 3.4e-05 49_[+3]_41 chrIII-NC_003074:2293953 3.4e-05 45_[+3]_45 chrII-NC_003071:18813111 3.5e-05 59_[+3]_31 chrIII-NC_003074:2242616 3.9e-05 33_[+3]_57 chrI-NC_003070:19848599- 4.1e-05 60_[+3]_30 chrIII-NC_003074:5293166 4.1e-05 35_[+3]_55 chrV-NC_003076:26253392- 4.6e-05 49_[+3]_41 chrV-NC_003076:25504492- 4.6e-05 47_[+3]_43 chrV-NC_003076:4451032-4 4.6e-05 39_[+3]_51 chrI-NC_003070:9267178-9 4.6e-05 48_[+3]_42 chrV-NC_003076:21045187- 5.2e-05 35_[+3]_55 chrV-NC_003076:26723094- 5.2e-05 80_[+3]_10 chrI-NC_003070:5086108-5 5.7e-05 73_[+3]_17 chrI-NC_003070:3101296-3 5.7e-05 90_[+3] chrI-NC_003070:3287515-3 5.7e-05 5_[+3]_85 chrIII-NC_003074:5121290 5.7e-05 25_[+3]_65 chrV-NC_003076:22388451- 6.6e-05 60_[+3]_30 chrIII-NC_003074:8238743 6.6e-05 75_[+3]_15 chrIV-NC_003075:17395836 7.7e-05 72_[+3]_18 chrIII-NC_003074:1880983 7.7e-05 14_[+3]_76 chrIII-NC_003074:2263425 7.7e-05 76_[+3]_14 chrII-NC_003071:18811109 8.8e-05 23_[+3]_67 chrIV-NC_003075:17319872 9.4e-05 23_[+3]_67 chrI-NC_003070:5004165-5 9.4e-05 81_[+3]_9 chrII-NC_003071:16221745 9.4e-05 68_[+3]_22 chrIII-NC_003074:6158020 9.4e-05 19_[+3]_71 chrV-NC_003076:17363447- 0.0001 86_[+3]_4 chrI-NC_003070:983778-98 0.0001 58_[+3]_32 chrIII-NC_003074:2232815 0.0001 34_[+3]_56 chrIII-NC_003074:1791000 0.0001 43_[+3]_47 chrIII-NC_003074:2037912 0.00011 43_[+3]_47 chrV-NC_003076:13936253- 0.00012 1_[+3]_89 chrV-NC_003076:4984734-4 0.00013 18_[+3]_72 chrI-NC_003070:772515-77 0.00013 71_[+3]_19 chrII-NC_003071:18609166 0.00013 43_[+3]_47 chrIII-NC_003074:4732994 0.00013 70_[+3]_20 chrV-NC_003076:8004910-8 0.00015 77_[+3]_13 chrIV-NC_003075:8435496- 0.00015 43_[+3]_47 chrI-NC_003070:28366917- 0.00015 38_[+3]_52 chrII-NC_003071:9523112- 0.00015 63_[+3]_27 chrV-NC_003076:26533069- 0.00016 43_[+3]_47 chrV-NC_003076:6381170-6 0.00016 12_[+3]_78 chrV-NC_003076:2939835-2 0.00016 11_[+3]_79 chrI-NC_003070:8305339-8 0.00016 17_[+3]_73 chrIII-NC_003074:4146195 0.00017 53_[+3]_37 chrV-NC_003076:16337674- 0.00019 40_[+3]_50 chrV-NC_003076:24507183- 0.00019 26_[+3]_64 chrII-NC_003071:14485962 0.00019 17_[+3]_73 chrII-NC_003071:16641452 0.00022 6_[+3]_84 chrI-NC_003070:567094-56 0.00023 32_[+3]_58 chrIV-NC_003075:17397905 0.00027 47_[+3]_43 chrV-NC_003076:26641454- 0.00032 19_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=10 seqs=93 chrIII-NC_003074:2315534 ( 79) CCACTTTGGG 1 chrIV-NC_003075:17006713 ( 62) CCACTTTTGG 1 chrI-NC_003070:6916711-6 ( 70) CCACTTTTGG 1 chrII-NC_003071:19071050 ( 68) CCACTTTTGG 1 chrV-NC_003076:1855815-1 ( 49) CCATTTTGGG 1 chrV-NC_003076:10455505- ( 43) CTACTTTGGG 1 chrIV-NC_003075:9319710- ( 45) CTACTTTGGG 1 chrI-NC_003070:26059448- ( 13) CCATTTTTGG 1 chrII-NC_003071:11871421 ( 42) CTACTTTGGG 1 chrII-NC_003071:17808033 ( 36) CTACTTTGGG 1 chrIV-NC_003075:17322266 ( 89) CCTTTTTGGG 1 chrIII-NC_003074:7507408 ( 43) CCTTTTTGGG 1 chrV-NC_003076:26042706- ( 28) CTACTTTTGG 1 chrI-NC_003070:7142957-7 ( 50) CCACTTCGGG 1 chrII-NC_003071:19013765 ( 43) CTACTTTTGG 1 chrV-NC_003076:1750908-1 ( 76) CCTTTTTTGG 1 chrIV-NC_003075:16154659 ( 57) CTTCTTTGGG 1 chrI-NC_003070:4904674-4 ( 70) CCTTTTTTGG 1 chrII-NC_003071:18414202 ( 37) CCCCTTTTGG 1 chrII-NC_003071:16559073 ( 52) CCACTTTAGG 1 chrIII-NC_003074:2048555 ( 85) CCCCTTTTGG 1 chrV-NC_003076:26562589- ( 45) CTTCTTTTGG 1 chrII-NC_003071:14331359 ( 42) CTTCTTTTGG 1 chrI-NC_003070:6174588-6 ( 6) CTATTTTGGG 1 chrI-NC_003070:1188280-1 ( 1) CTATTTTGGG 1 chrII-NC_003071:1136739- ( 49) CCTCTTCTGG 1 chrIII-NC_003074:5247210 ( 50) CCTCTTCTGG 1 chrI-NC_003070:7930462-7 ( 19) CTATTTTTGG 1 chrI-NC_003070:3571887-3 ( 31) CCATTTTAGG 1 chrIII-NC_003074:1928100 ( 40) CTCCTTTGGG 1 chrV-NC_003076:23147444- ( 9) CCACTTTGGT 1 chrIII-NC_003074:6250572 ( 51) CCAATTTGGG 1 chrIII-NC_003074:1373635 ( 50) CCATTTCTGG 1 chrV-NC_003076:19273677- ( 25) CTCCTTTTGG 1 chrV-NC_003076:22997202- ( 34) CTTTTTTTGG 1 chrV-NC_003076:23670284- ( 62) CTCCTTTTGG 1 chrII-NC_003071:19298962 ( 85) CTTTTTTTGG 1 chrV-NC_003076:21855079- ( 36) CCTTTTTAGG 1 chrI-NC_003070:10726311- ( 78) CCACTTTTGT 1 chrII-NC_003071:11925629 ( 62) CCACTTTTGT 1 chrI-NC_003070:25228955- ( 44) CTTCTTCGGG 1 chrII-NC_003071:17446382 ( 50) CCTCTTTGGT 1 chrIII-NC_003074:2293953 ( 46) CCTCTTTGGT 1 chrII-NC_003071:18813111 ( 60) CTTCTTTAGG 1 chrIII-NC_003074:2242616 ( 34) CTTCTTCTGG 1 chrI-NC_003070:19848599- ( 61) CCATTTTGGT 1 chrIII-NC_003074:5293166 ( 36) CTATTTCGGG 1 chrV-NC_003076:26253392- ( 50) CCCTTTCGGG 1 chrV-NC_003076:25504492- ( 48) CTATTTTAGG 1 chrV-NC_003076:4451032-4 ( 40) CCACATTTGG 1 chrI-NC_003070:9267178-9 ( 49) CTCTTTTTGG 1 chrV-NC_003076:21045187- ( 36) CCCTTTTAGG 1 chrV-NC_003076:26723094- ( 81) CCATTTTTGT 1 chrI-NC_003070:5086108-5 ( 74) CCAGTTTTGG 1 chrI-NC_003070:3101296-3 ( 91) CCATTTCAGG 1 chrI-NC_003070:3287515-3 ( 6) CCCATTTGGG 1 chrIII-NC_003074:5121290 ( 26) CCATTTCAGG 1 chrV-NC_003076:22388451- ( 61) CTAATTTTGG 1 chrIII-NC_003074:8238743 ( 76) CTAATTTTGG 1 chrIV-NC_003075:17395836 ( 73) CCTTTTTTGT 1 chrIII-NC_003074:1880983 ( 15) CCACTTTAGT 1 chrIII-NC_003074:2263425 ( 77) CTTTTTCTGG 1 chrII-NC_003071:18811109 ( 24) CTTATTTTGG 1 chrIV-NC_003075:17319872 ( 24) CCTATTTAGG 1 chrI-NC_003070:5004165-5 ( 82) CCTTATTGGG 1 chrII-NC_003071:16221745 ( 69) CCTCTTTAGT 1 chrIII-NC_003074:6158020 ( 20) CCTATTTAGG 1 chrV-NC_003076:17363447- ( 87) CCATTTATGG 1 chrI-NC_003070:983778-98 ( 59) CTACATTTGG 1 chrIII-NC_003074:2232815 ( 35) CTACTTAGGG 1 chrIII-NC_003074:1791000 ( 44) CTACATTTGG 1 chrIII-NC_003074:2037912 ( 44) CCTTATTTGG 1 chrV-NC_003076:13936253- ( 2) CTTTTTTGGT 1 chrV-NC_003076:4984734-4 ( 19) CCAATTTGGT 1 chrI-NC_003070:772515-77 ( 72) CCATTTCTGT 1 chrII-NC_003071:18609166 ( 44) CCAATTTGGT 1 chrIII-NC_003074:4732994 ( 71) CTTCTTAGGG 1 chrV-NC_003076:8004910-8 ( 78) CCATGTTTGG 1 chrIV-NC_003075:8435496- ( 44) CTACTTTAGT 1 chrI-NC_003070:28366917- ( 39) CTATATTGGG 1 chrII-NC_003071:9523112- ( 64) CTCCTTTTGT 1 chrV-NC_003076:26533069- ( 44) CCTTGTTGGG 1 chrV-NC_003076:6381170-6 ( 13) CTTGTTTTGG 1 chrV-NC_003076:2939835-2 ( 12) CCTTTTTAGT 1 chrI-NC_003070:8305339-8 ( 18) CCATTTTCGG 1 chrIII-NC_003074:4146195 ( 54) CTTCTTCGGT 1 chrV-NC_003076:16337674- ( 41) CTATTTATGG 1 chrV-NC_003076:24507183- ( 27) CTATTTATGG 1 chrII-NC_003071:14485962 ( 18) CCTATTTTGT 1 chrII-NC_003071:16641452 ( 7) CCTTATTAGG 1 chrI-NC_003070:567094-56 ( 33) CCCGTTCGGG 1 chrIV-NC_003075:17397905 ( 48) CCACTTGAGG 1 chrV-NC_003076:26641454- ( 20) TCACTTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 9.34621 E= 1.2e-032 -1318 242 -1318 -487 -1318 165 -1318 42 74 -64 -1318 17 -155 129 -252 38 -207 -1318 -310 152 -1318 -1318 -1318 167 -255 -30 -410 132 -88 -410 89 59 -1318 -1318 243 -1318 -1318 -1318 210 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 93 E= 1.2e-032 0.000000 0.989247 0.000000 0.010753 0.000000 0.580645 0.000000 0.419355 0.526882 0.118280 0.000000 0.354839 0.107527 0.451613 0.032258 0.408602 0.075269 0.000000 0.021505 0.903226 0.000000 0.000000 0.000000 1.000000 0.053763 0.150538 0.010753 0.784946 0.172043 0.010753 0.344086 0.473118 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.795699 0.204301 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- C[CT][AT][CT]TTT[TG]G[GT] -------------------------------------------------------------------------------- Time 148.15 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 10 sites = 52 llr = 495 E-value = 6.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 29:92a:9:a pos.-specific C ::1:2:2::: probability G 8:8:6:71a: matrix T :11:::2::: bits 2.4 2.2 * 1.9 * 1.7 * * Relative 1.5 * * * ** Entropy 1.2 **** * *** (13.7 bits) 1.0 ********** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel GAGAGAGAGA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:3613569-3 19 6.83e-07 GAGAGTGAGT GAGAGAGAGA GAGAAGGCGT chrV-NC_003076:2123676-2 62 6.83e-07 GGATCCATAG GAGAGAGAGA TAGACATAAA chrV-NC_003076:26138594- 69 6.83e-07 GAAAGAGAGT GAGAGAGAGA CAAATATACA chrV-NC_003076:17363447- 34 6.83e-07 AATGGAAATA GAGAGAGAGA AAAGAGTAAA chrIV-NC_003075:17780864 5 6.83e-07 GAAA GAGAGAGAGA GAGAGACAGA chrI-NC_003070:8727068-8 84 6.83e-07 AAGAGGTACT GAGAGAGAGA GAGAGAG chrII-NC_003071:432261-4 88 6.83e-07 GAGAGAGCTA GAGAGAGAGA GAC chrII-NC_003071:893522-8 71 6.83e-07 GAAAAGAGAA GAGAGAGAGA GATAAAATCT chrIII-NC_003074:1880983 72 6.83e-07 AAAATAGATA GAGAGAGAGA GAGAATGAGT chrIII-NC_003074:7211460 51 6.83e-07 TGCAGACAAT GAGAGAGAGA GAGATAGTAC chrIII-NC_003074:2058744 13 6.83e-07 ACGAGTGATA GAGAGAGAGA TGAAGGAGCT chrIII-NC_003074:4161767 81 1.37e-06 AAGAATCCAA GAGAGACAGA TAGAGAAGAA chrV-NC_003076:3515115-3 73 3.21e-06 GGCATCAGAA GAGAAAGAGA CATGTCGACC chrI-NC_003070:9267178-9 10 5.54e-06 GAAAATTGA GAGAGATAGA CTTTACTGTT chrIII-NC_003074:4146195 26 5.54e-06 GACTTTGTGG AAGAGAGAGA AAACAAAAAA chrV-NC_003076:20898801- 6 7.30e-06 TGTAT GTGAGAGAGA GTACATACGT chrV-NC_003076:10455505- 57 8.46e-06 TTTGGGAGAT GATAGAGAGA CAATACACAA chrI-NC_003070:20762967- 47 8.46e-06 TACATATAGT GATAGAGAGA ATCCTTTCAC chrIII-NC_003074:2242616 79 8.46e-06 TCGGGGAAGA GATAGAGAGA GTAAGGTCAA chrI-NC_003070:28236993- 9 9.54e-06 CTGTAAGT GAGACACAGA TCCGTCTTTC chrV-NC_003076:3864674-3 59 1.07e-05 AAAGTGGAAA GAGAAACAGA GTTTGAGTAT chrII-NC_003071:17819844 38 1.07e-05 TGATTCTGAT GAGAAACAGA GCCCATACCT chrI-NC_003070:7384592-7 8 1.60e-05 AGTAAAA AAGACAGAGA CACTCACTGC chrIV-NC_003075:16689620 14 2.10e-05 GTGAAAAGAA AAGAAAGAGA AAAATAAAGA chrIV-NC_003075:17002611 1 2.10e-05 . GAGAAATAGA TTTGATGGAG chrI-NC_003070:10978109- 91 2.10e-05 ACCTACACTA GACACAGAGA chrI-NC_003070:20186963- 18 2.10e-05 AAAATGAGAG AAGAAAGAGA AAAATAAAAA chrI-NC_003070:11621892- 10 2.10e-05 GAAAGGAAT AAGAAAGAGA TGTCTCTTGA chrIII-NC_003074:7789683 65 2.10e-05 AGAATCAAGA AAGAAAGAGA GCTAGAATCT chrI-NC_003070:28189210- 7 2.22e-05 GTGTCA GACAAAGAGA CCTGAATTAG chrI-NC_003070:19848599- 3 2.50e-05 AC AAGAGATAGA AAGAAATAGA chrII-NC_003071:14343671 37 2.50e-05 AGAGGAGGAA GAGACAGGGA ACAGAATGGC chrIV-NC_003075:17397905 5 2.98e-05 GGTA GAGAGAGAAA TAGTGGGACA chrII-NC_003071:8692385- 4 2.98e-05 AAT GACAGATAGA GAAGACGATG chrI-NC_003070:10679066- 34 3.05e-05 AACGGTCAAA GTGACAGAGA AACGTAATGC chrV-NC_003076:23218219- 82 3.35e-05 GAAAAAAAGT GAGTGAGAGA AGAAGATTA chrIV-NC_003075:9249999- 29 3.64e-05 ATGGTCCGAG GAGAGATGGA CATTAGTCTT chrIV-NC_003075:13193728 88 3.92e-05 AGATTAGAGA GAGGCAGAGA GGT chrI-NC_003070:26727714- 7 4.33e-05 CAAAAA GTGAGATAGA ATGGTAAAGA chrII-NC_003071:9577581- 5 4.40e-05 ATGT GTCAGAGAGA GTGTGTAGTG chrV-NC_003076:566586-56 66 4.86e-05 CTAAAAACAT GATAGATAGA GTAAATGCCT chrIII-NC_003074:1928100 21 4.86e-05 TGCTGCAGGT GAGAGACTGA CGGTTACTGC chrV-NC_003076:3242335-3 27 5.22e-05 GACAGAGTGG GGGAGACAGA ATAGGAGGAT chrI-NC_003070:5513978-5 13 5.22e-05 CACAGAACCA AAGACACAGA TGGACTTTTC chrIII-NC_003074:2058364 10 5.99e-05 GTATACGAG GAGACAGAGG AAGAGGCTGA chrII-NC_003071:12941145 68 6.42e-05 AAAAAGGGCA GAGAGATTGA GAAGTTCCAA chrV-NC_003076:21793629- 65 9.03e-05 TAAACCTTGA GACAAATAGA AAGACGTTCT chrI-NC_003070:11630791- 19 9.03e-05 AAAGAGAAAA GAGAAAGAAA TTGAAAATAA chrIII-NC_003074:2058578 3 9.35e-05 TG AAGAGACGGA TGTGACAATA chrV-NC_003076:18947037- 15 1.39e-04 TGTGCGGTCC AAGGGACAGA GCATATAAAA chrIV-NC_003075:14815782 85 1.53e-04 TAAAAAGAGT AATAAAGAGA TGACGT chrI-NC_003070:27484286- 39 1.69e-04 ATCGTTGGTA TACAGAGAGA CCAAACATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:3613569-3 6.8e-07 18_[+4]_72 chrV-NC_003076:2123676-2 6.8e-07 61_[+4]_29 chrV-NC_003076:26138594- 6.8e-07 68_[+4]_22 chrV-NC_003076:17363447- 6.8e-07 33_[+4]_57 chrIV-NC_003075:17780864 6.8e-07 4_[+4]_86 chrI-NC_003070:8727068-8 6.8e-07 83_[+4]_7 chrII-NC_003071:432261-4 6.8e-07 87_[+4]_3 chrII-NC_003071:893522-8 6.8e-07 70_[+4]_20 chrIII-NC_003074:1880983 6.8e-07 71_[+4]_19 chrIII-NC_003074:7211460 6.8e-07 50_[+4]_40 chrIII-NC_003074:2058744 6.8e-07 12_[+4]_78 chrIII-NC_003074:4161767 1.4e-06 80_[+4]_10 chrV-NC_003076:3515115-3 3.2e-06 72_[+4]_18 chrI-NC_003070:9267178-9 5.5e-06 9_[+4]_81 chrIII-NC_003074:4146195 5.5e-06 25_[+4]_65 chrV-NC_003076:20898801- 7.3e-06 5_[+4]_85 chrV-NC_003076:10455505- 8.5e-06 56_[+4]_34 chrI-NC_003070:20762967- 8.5e-06 46_[+4]_44 chrIII-NC_003074:2242616 8.5e-06 78_[+4]_12 chrI-NC_003070:28236993- 9.5e-06 8_[+4]_82 chrV-NC_003076:3864674-3 1.1e-05 58_[+4]_32 chrII-NC_003071:17819844 1.1e-05 37_[+4]_53 chrI-NC_003070:7384592-7 1.6e-05 7_[+4]_83 chrIV-NC_003075:16689620 2.1e-05 13_[+4]_77 chrIV-NC_003075:17002611 2.1e-05 [+4]_90 chrI-NC_003070:10978109- 2.1e-05 90_[+4] chrI-NC_003070:20186963- 2.1e-05 17_[+4]_73 chrI-NC_003070:11621892- 2.1e-05 9_[+4]_81 chrIII-NC_003074:7789683 2.1e-05 64_[+4]_26 chrI-NC_003070:28189210- 2.2e-05 6_[+4]_84 chrI-NC_003070:19848599- 2.5e-05 2_[+4]_88 chrII-NC_003071:14343671 2.5e-05 36_[+4]_54 chrIV-NC_003075:17397905 3e-05 4_[+4]_86 chrII-NC_003071:8692385- 3e-05 3_[+4]_87 chrI-NC_003070:10679066- 3e-05 33_[+4]_57 chrV-NC_003076:23218219- 3.3e-05 81_[+4]_9 chrIV-NC_003075:9249999- 3.6e-05 28_[+4]_62 chrIV-NC_003075:13193728 3.9e-05 87_[+4]_3 chrI-NC_003070:26727714- 4.3e-05 6_[+4]_84 chrII-NC_003071:9577581- 4.4e-05 4_[+4]_86 chrV-NC_003076:566586-56 4.9e-05 65_[+4]_25 chrIII-NC_003074:1928100 4.9e-05 20_[+4]_70 chrV-NC_003076:3242335-3 5.2e-05 26_[+4]_64 chrI-NC_003070:5513978-5 5.2e-05 12_[+4]_78 chrIII-NC_003074:2058364 6e-05 9_[+4]_81 chrII-NC_003071:12941145 6.4e-05 67_[+4]_23 chrV-NC_003076:21793629- 9e-05 64_[+4]_26 chrI-NC_003070:11630791- 9e-05 18_[+4]_72 chrIII-NC_003074:2058578 9.4e-05 2_[+4]_88 chrV-NC_003076:18947037- 0.00014 14_[+4]_76 chrIV-NC_003075:14815782 0.00015 84_[+4]_6 chrI-NC_003070:27484286- 0.00017 38_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=10 seqs=52 chrV-NC_003076:3613569-3 ( 19) GAGAGAGAGA 1 chrV-NC_003076:2123676-2 ( 62) GAGAGAGAGA 1 chrV-NC_003076:26138594- ( 69) GAGAGAGAGA 1 chrV-NC_003076:17363447- ( 34) GAGAGAGAGA 1 chrIV-NC_003075:17780864 ( 5) GAGAGAGAGA 1 chrI-NC_003070:8727068-8 ( 84) GAGAGAGAGA 1 chrII-NC_003071:432261-4 ( 88) GAGAGAGAGA 1 chrII-NC_003071:893522-8 ( 71) GAGAGAGAGA 1 chrIII-NC_003074:1880983 ( 72) GAGAGAGAGA 1 chrIII-NC_003074:7211460 ( 51) GAGAGAGAGA 1 chrIII-NC_003074:2058744 ( 13) GAGAGAGAGA 1 chrIII-NC_003074:4161767 ( 81) GAGAGACAGA 1 chrV-NC_003076:3515115-3 ( 73) GAGAAAGAGA 1 chrI-NC_003070:9267178-9 ( 10) GAGAGATAGA 1 chrIII-NC_003074:4146195 ( 26) AAGAGAGAGA 1 chrV-NC_003076:20898801- ( 6) GTGAGAGAGA 1 chrV-NC_003076:10455505- ( 57) GATAGAGAGA 1 chrI-NC_003070:20762967- ( 47) GATAGAGAGA 1 chrIII-NC_003074:2242616 ( 79) GATAGAGAGA 1 chrI-NC_003070:28236993- ( 9) GAGACACAGA 1 chrV-NC_003076:3864674-3 ( 59) GAGAAACAGA 1 chrII-NC_003071:17819844 ( 38) GAGAAACAGA 1 chrI-NC_003070:7384592-7 ( 8) AAGACAGAGA 1 chrIV-NC_003075:16689620 ( 14) AAGAAAGAGA 1 chrIV-NC_003075:17002611 ( 1) GAGAAATAGA 1 chrI-NC_003070:10978109- ( 91) GACACAGAGA 1 chrI-NC_003070:20186963- ( 18) AAGAAAGAGA 1 chrI-NC_003070:11621892- ( 10) AAGAAAGAGA 1 chrIII-NC_003074:7789683 ( 65) AAGAAAGAGA 1 chrI-NC_003070:28189210- ( 7) GACAAAGAGA 1 chrI-NC_003070:19848599- ( 3) AAGAGATAGA 1 chrII-NC_003071:14343671 ( 37) GAGACAGGGA 1 chrIV-NC_003075:17397905 ( 5) GAGAGAGAAA 1 chrII-NC_003071:8692385- ( 4) GACAGATAGA 1 chrI-NC_003070:10679066- ( 34) GTGACAGAGA 1 chrV-NC_003076:23218219- ( 82) GAGTGAGAGA 1 chrIV-NC_003075:9249999- ( 29) GAGAGATGGA 1 chrIV-NC_003075:13193728 ( 88) GAGGCAGAGA 1 chrI-NC_003070:26727714- ( 7) GTGAGATAGA 1 chrII-NC_003071:9577581- ( 5) GTCAGAGAGA 1 chrV-NC_003076:566586-56 ( 66) GATAGATAGA 1 chrIII-NC_003074:1928100 ( 21) GAGAGACTGA 1 chrV-NC_003076:3242335-3 ( 27) GGGAGACAGA 1 chrI-NC_003070:5513978-5 ( 13) AAGACACAGA 1 chrIII-NC_003074:2058364 ( 10) GAGACAGAGG 1 chrII-NC_003071:12941145 ( 68) GAGAGATTGA 1 chrV-NC_003076:21793629- ( 65) GACAAATAGA 1 chrI-NC_003070:11630791- ( 19) GAGAAAGAAA 1 chrIII-NC_003074:2058578 ( 3) AAGAGACGGA 1 chrV-NC_003076:18947037- ( 15) AAGGGACAGA 1 chrIV-NC_003075:14815782 ( 85) AATAAAGAGA 1 chrI-NC_003070:27484286- ( 39) TACAGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 10.9368 E= 6.6e-018 -58 -1234 205 -403 152 -1234 -326 -203 -1234 -68 209 -171 158 -1234 -227 -403 -45 -27 173 -1234 166 -1234 -1234 -1234 -1234 -10 182 -86 152 -1234 -168 -303 -303 -1234 238 -1234 164 -1234 -326 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 52 E= 6.6e-018 0.211538 0.000000 0.769231 0.019231 0.903846 0.000000 0.019231 0.076923 0.000000 0.115385 0.788462 0.096154 0.942308 0.000000 0.038462 0.019231 0.230769 0.153846 0.615385 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.173077 0.653846 0.173077 0.903846 0.000000 0.057692 0.038462 0.038462 0.000000 0.961538 0.000000 0.980769 0.000000 0.019231 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [GA]AGA[GA]AGAGA -------------------------------------------------------------------------------- Time 189.86 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 10 sites = 61 llr = 511 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 9a89:368a6 pos.-specific C ::::11:::: probability G 1:219342:4 matrix T :::::3:::: bits 2.4 2.2 1.9 * 1.7 * * * Relative 1.5 * ** * Entropy 1.2 ** ** * (12.1 bits) 1.0 ***** **** 0.7 ***** **** 0.5 ***** **** 0.2 ***** **** 0.0 ---------- Multilevel AAAAGAAAAA consensus G TG G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:3613569-3 44 3.16e-06 GGCGTGAGAG AAAAGGAAAG GATTTGTGTG chrII-NC_003071:18801878 26 3.16e-06 ATTAAAAAAG AAAAGGAAAG ATTACTACAA chrV-NC_003076:18000368- 70 1.93e-05 CTAATAATGA AAAAGTGAAG AGACTAGACA chrI-NC_003070:28183872- 70 1.93e-05 AAATGATCAA AAAAGGAAAA CGAGGGCCAC chrI-NC_003070:27363804- 27 1.93e-05 AAAAAAGTTG AAAAGGAAAA CATTTATAGG chrI-NC_003070:19762335- 36 1.93e-05 CCAAAACTTA AAAAGAGAAG ATCTTTAGGA chrII-NC_003071:8692385- 57 1.93e-05 CCCAAATGGC AAAAGAAAAG TTCCTTACCT chrIII-NC_003074:4161767 13 1.93e-05 ATTCGAAGAG AAAAGAGAAG TGGGGACAAA chrIII-NC_003074:2345891 38 1.93e-05 ATCCATGGAT AAAAGAGAAG AAAAGACAAA chrV-NC_003076:15871704- 8 3.95e-05 AGAATTG AAAAGAAAAA ATAGTACATT chrV-NC_003076:26837938- 28 3.95e-05 AGTAACAGTA AAAAGTAAAA AGTATCTCTC chrV-NC_003076:16563593- 59 3.95e-05 AAAAATGGCA AAAAGTAAAA AAGATTTCCA chrV-NC_003076:1279542-1 15 3.95e-05 CGGAAGGTAA AAAAGTAAAA AACACAATTA chrIV-NC_003075:17322266 42 3.95e-05 TAGTGACCCT AAAAGTAAAA GCTTTAATAA chrI-NC_003070:11630791- 8 3.95e-05 GAAAATG AAAAGAGAAA AGAGAAAGAA chrI-NC_003070:25319703- 76 3.95e-05 ATCCTGTCCG AAAAGTGAAA ACTAACACAA chrI-NC_003070:13228453- 65 3.95e-05 AAAAACAGCA AAAAGTAAAA ATAAAAATTC chrI-NC_003070:25022250- 58 3.95e-05 GGGAGTTTAA AAAAGTGAAA GGAGACAAAA chrI-NC_003070:4904674-4 14 3.95e-05 TGAACAAAAA AAAAGAAAAA AGGAAGGCTT chrI-NC_003070:25682284- 73 3.95e-05 CCGAAGCTAC AAAAGAAAAA TGTCCAATCA chrII-NC_003071:14735538 67 3.95e-05 CCAAAACGGG AAAAGAAAAA GATAAAAGAG chrV-NC_003076:23661495- 28 4.90e-05 TGTTGTACGG AAGAGGAAAA AAAATAAACC chrV-NC_003076:17363447- 45 4.90e-05 AGAGAGAGAA AAGAGTAAAG TAGCAAAATC chrIV-NC_003075:17398887 12 4.90e-05 TGGTGGATGG AAGAGGGAAA AAGTGGACCC chrI-NC_003070:4600560-4 67 4.90e-05 TTGTTTAAAT AAGAGGGAAA CGGGTAAGTA chrI-NC_003070:11446219- 69 4.90e-05 CAAAGCCTTC AAGAGGAAAA TAAAGCAGAA chrII-NC_003071:17791516 61 4.90e-05 CACATGAGGA AAGAGTAAAG CAGAAAGACT chrII-NC_003071:17809800 43 4.90e-05 GGTATGATAA AAGAGTGAAG ACTTAGAAGA chrI-NC_003070:7515017-7 16 6.16e-05 AGACTATCAG AAGAGTGAAA TGATGATGAC chrIV-NC_003075:15054453 15 7.61e-05 CAACTGCAAG AAAAGTGGAG TTTGTTTTGC chrIV-NC_003075:11604849 73 7.61e-05 CGTAAGAAAA AAAAGGAGAA ATTTTACTCG chrIV-NC_003075:10382476 22 7.61e-05 CTTTCACATG AAAAGCAAAG ACAAGTAATG chrIV-NC_003075:13193728 60 7.61e-05 TCCTACAGAA AAAAGAAGAG AACATTTAAG chrI-NC_003070:11033867- 3 7.61e-05 AC AAAAGCGAAG CCTCTTGAGT chrII-NC_003071:519724-5 18 7.61e-05 GAGTTTCGTA AAAAGGGGAA CCTGCAAAGT chrV-NC_003076:5863206-5 14 1.03e-04 ATAAAAGACC AAAAGCAAAA AGATTCCGCT chrV-NC_003076:3515115-3 2 1.03e-04 A AAAAGTAGAA AAGAGTATAA chrI-NC_003070:28236993- 77 1.03e-04 AGTAGAGTAA GAAAGTGAAG CATGGGAAGA chrII-NC_003071:15009657 19 1.03e-04 AAAAAGCGTG AAAAGAAGAA GGAACGTACA chrII-NC_003071:13276569 7 1.03e-04 TTTACT GAAAGTGAAG ACCAGCCTAT chrII-NC_003071:9523112- 13 1.03e-04 GTGGGATTAG GAAAGAAAAG ATGTATATGA chrII-NC_003071:893522-8 19 1.03e-04 CGCAATGATC AAAAGCAAAA TCGAGCTTCG chrI-NC_003070:9269999-9 15 1.22e-04 AAAATGAAAT GAAAGAAAAA GCTGTCTGAG chrI-NC_003070:26727714- 23 1.22e-04 TAGAATGGTA AAGAGAAGAG AGTGCTTTCG chrII-NC_003071:14343671 24 1.22e-04 ATGTGTCAAA AAGAGAGGAG GAAGAGACAG chrII-NC_003071:15099969 40 1.22e-04 GCCGTGTTAG GAGAGGGAAG TGGCGCGTGA chrII-NC_003071:17819844 78 1.22e-04 CTCTAAACAT GAAAGAAAAA TTGGATGGTC chrIII-NC_003074:1791000 91 1.22e-04 ACCAACCTAG AAGAGTAGAG chrV-NC_003076:7256699-7 67 1.24e-04 GTTTTCTATT AAAGGGAAAG AAATAAAGTT chrI-NC_003070:9778055-9 18 1.24e-04 TTTAACGTAT AAAGGGAAAG TTAGTTCAAA chrI-NC_003070:10726311- 64 1.42e-04 ATGGTTTAAG AAAACGAAAG ACTTCCACTT chrIII-NC_003074:2315534 27 1.42e-04 ATCAGACATC AAGAGAGGAA ACATAACTCC chrII-NC_003071:12774547 49 1.51e-04 TCCTTTTCCT AAAGGGGAAA TACAAAAGGA chrV-NC_003076:26253392- 4 1.79e-04 TTA AAAACAAAAG GATAGAATCG chrII-NC_003071:432261-4 32 1.79e-04 TCAAGTGTAT GAGAGAGAAA TAGGTTTTTG chrIII-NC_003074:6250572 77 1.79e-04 GAGGCTACAT AAAACTGAAG CGTCCCGTCA chrI-NC_003070:54911-550 47 1.90e-04 AGTGAGCTTA AAAGGTAAAA AAGCTGCAAC chrV-NC_003076:1395582-1 4 2.31e-04 AGA AAAAGGACAA TTCTTTATTT chrV-NC_003076:23785222- 77 2.31e-04 AAATGGAAAG AAAACTAAAA TCAGAAACCA chrIV-NC_003075:630489-6 45 2.31e-04 TCTATTACCA AAAACAGAAA GTTTCCCACC chrII-NC_003071:17584835 32 2.70e-04 AAGCTAAACA AAAAGAACAA ATCAAAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:3613569-3 3.2e-06 43_[+5]_47 chrII-NC_003071:18801878 3.2e-06 25_[+5]_65 chrV-NC_003076:18000368- 1.9e-05 69_[+5]_21 chrI-NC_003070:28183872- 1.9e-05 69_[+5]_21 chrI-NC_003070:27363804- 1.9e-05 26_[+5]_64 chrI-NC_003070:19762335- 1.9e-05 35_[+5]_55 chrII-NC_003071:8692385- 1.9e-05 56_[+5]_34 chrIII-NC_003074:4161767 1.9e-05 12_[+5]_78 chrIII-NC_003074:2345891 1.9e-05 37_[+5]_53 chrV-NC_003076:15871704- 4e-05 7_[+5]_83 chrV-NC_003076:26837938- 4e-05 27_[+5]_63 chrV-NC_003076:16563593- 4e-05 58_[+5]_32 chrV-NC_003076:1279542-1 4e-05 14_[+5]_76 chrIV-NC_003075:17322266 4e-05 41_[+5]_49 chrI-NC_003070:11630791- 4e-05 7_[+5]_83 chrI-NC_003070:25319703- 4e-05 75_[+5]_15 chrI-NC_003070:13228453- 4e-05 64_[+5]_26 chrI-NC_003070:25022250- 4e-05 57_[+5]_33 chrI-NC_003070:4904674-4 4e-05 13_[+5]_77 chrI-NC_003070:25682284- 4e-05 72_[+5]_18 chrII-NC_003071:14735538 4e-05 66_[+5]_24 chrV-NC_003076:23661495- 4.9e-05 27_[+5]_63 chrV-NC_003076:17363447- 4.9e-05 44_[+5]_46 chrIV-NC_003075:17398887 4.9e-05 11_[+5]_79 chrI-NC_003070:4600560-4 4.9e-05 66_[+5]_24 chrI-NC_003070:11446219- 4.9e-05 68_[+5]_22 chrII-NC_003071:17791516 4.9e-05 60_[+5]_30 chrII-NC_003071:17809800 4.9e-05 42_[+5]_48 chrI-NC_003070:7515017-7 6.2e-05 15_[+5]_75 chrIV-NC_003075:15054453 7.6e-05 14_[+5]_76 chrIV-NC_003075:11604849 7.6e-05 72_[+5]_18 chrIV-NC_003075:10382476 7.6e-05 21_[+5]_69 chrIV-NC_003075:13193728 7.6e-05 59_[+5]_31 chrI-NC_003070:11033867- 7.6e-05 2_[+5]_88 chrII-NC_003071:519724-5 7.6e-05 17_[+5]_73 chrV-NC_003076:5863206-5 0.0001 13_[+5]_77 chrV-NC_003076:3515115-3 0.0001 1_[+5]_89 chrI-NC_003070:28236993- 0.0001 76_[+5]_14 chrII-NC_003071:15009657 0.0001 18_[+5]_72 chrII-NC_003071:13276569 0.0001 6_[+5]_84 chrII-NC_003071:9523112- 0.0001 12_[+5]_78 chrII-NC_003071:893522-8 0.0001 18_[+5]_72 chrI-NC_003070:9269999-9 0.00012 14_[+5]_76 chrI-NC_003070:26727714- 0.00012 22_[+5]_68 chrII-NC_003071:14343671 0.00012 23_[+5]_67 chrII-NC_003071:15099969 0.00012 39_[+5]_51 chrII-NC_003071:17819844 0.00012 77_[+5]_13 chrIII-NC_003074:1791000 0.00012 90_[+5] chrV-NC_003076:7256699-7 0.00012 66_[+5]_24 chrI-NC_003070:9778055-9 0.00012 17_[+5]_73 chrI-NC_003070:10726311- 0.00014 63_[+5]_27 chrIII-NC_003074:2315534 0.00014 26_[+5]_64 chrII-NC_003071:12774547 0.00015 48_[+5]_42 chrV-NC_003076:26253392- 0.00018 3_[+5]_87 chrII-NC_003071:432261-4 0.00018 31_[+5]_59 chrIII-NC_003074:6250572 0.00018 76_[+5]_14 chrI-NC_003070:54911-550 0.00019 46_[+5]_44 chrV-NC_003076:1395582-1 0.00023 3_[+5]_87 chrV-NC_003076:23785222- 0.00023 76_[+5]_14 chrIV-NC_003075:630489-6 0.00023 44_[+5]_46 chrII-NC_003071:17584835 0.00027 31_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=10 seqs=61 chrV-NC_003076:3613569-3 ( 44) AAAAGGAAAG 1 chrII-NC_003071:18801878 ( 26) AAAAGGAAAG 1 chrV-NC_003076:18000368- ( 70) AAAAGTGAAG 1 chrI-NC_003070:28183872- ( 70) AAAAGGAAAA 1 chrI-NC_003070:27363804- ( 27) AAAAGGAAAA 1 chrI-NC_003070:19762335- ( 36) AAAAGAGAAG 1 chrII-NC_003071:8692385- ( 57) AAAAGAAAAG 1 chrIII-NC_003074:4161767 ( 13) AAAAGAGAAG 1 chrIII-NC_003074:2345891 ( 38) AAAAGAGAAG 1 chrV-NC_003076:15871704- ( 8) AAAAGAAAAA 1 chrV-NC_003076:26837938- ( 28) AAAAGTAAAA 1 chrV-NC_003076:16563593- ( 59) AAAAGTAAAA 1 chrV-NC_003076:1279542-1 ( 15) AAAAGTAAAA 1 chrIV-NC_003075:17322266 ( 42) AAAAGTAAAA 1 chrI-NC_003070:11630791- ( 8) AAAAGAGAAA 1 chrI-NC_003070:25319703- ( 76) AAAAGTGAAA 1 chrI-NC_003070:13228453- ( 65) AAAAGTAAAA 1 chrI-NC_003070:25022250- ( 58) AAAAGTGAAA 1 chrI-NC_003070:4904674-4 ( 14) AAAAGAAAAA 1 chrI-NC_003070:25682284- ( 73) AAAAGAAAAA 1 chrII-NC_003071:14735538 ( 67) AAAAGAAAAA 1 chrV-NC_003076:23661495- ( 28) AAGAGGAAAA 1 chrV-NC_003076:17363447- ( 45) AAGAGTAAAG 1 chrIV-NC_003075:17398887 ( 12) AAGAGGGAAA 1 chrI-NC_003070:4600560-4 ( 67) AAGAGGGAAA 1 chrI-NC_003070:11446219- ( 69) AAGAGGAAAA 1 chrII-NC_003071:17791516 ( 61) AAGAGTAAAG 1 chrII-NC_003071:17809800 ( 43) AAGAGTGAAG 1 chrI-NC_003070:7515017-7 ( 16) AAGAGTGAAA 1 chrIV-NC_003075:15054453 ( 15) AAAAGTGGAG 1 chrIV-NC_003075:11604849 ( 73) AAAAGGAGAA 1 chrIV-NC_003075:10382476 ( 22) AAAAGCAAAG 1 chrIV-NC_003075:13193728 ( 60) AAAAGAAGAG 1 chrI-NC_003070:11033867- ( 3) AAAAGCGAAG 1 chrII-NC_003071:519724-5 ( 18) AAAAGGGGAA 1 chrV-NC_003076:5863206-5 ( 14) AAAAGCAAAA 1 chrV-NC_003076:3515115-3 ( 2) AAAAGTAGAA 1 chrI-NC_003070:28236993- ( 77) GAAAGTGAAG 1 chrII-NC_003071:15009657 ( 19) AAAAGAAGAA 1 chrII-NC_003071:13276569 ( 7) GAAAGTGAAG 1 chrII-NC_003071:9523112- ( 13) GAAAGAAAAG 1 chrII-NC_003071:893522-8 ( 19) AAAAGCAAAA 1 chrI-NC_003070:9269999-9 ( 15) GAAAGAAAAA 1 chrI-NC_003070:26727714- ( 23) AAGAGAAGAG 1 chrII-NC_003071:14343671 ( 24) AAGAGAGGAG 1 chrII-NC_003071:15099969 ( 40) GAGAGGGAAG 1 chrII-NC_003071:17819844 ( 78) GAAAGAAAAA 1 chrIII-NC_003074:1791000 ( 91) AAGAGTAGAG 1 chrV-NC_003076:7256699-7 ( 67) AAAGGGAAAG 1 chrI-NC_003070:9778055-9 ( 18) AAAGGGAAAG 1 chrI-NC_003070:10726311- ( 64) AAAACGAAAG 1 chrIII-NC_003074:2315534 ( 27) AAGAGAGGAA 1 chrII-NC_003071:12774547 ( 49) AAAGGGGAAA 1 chrV-NC_003076:26253392- ( 4) AAAACAAAAG 1 chrII-NC_003071:432261-4 ( 32) GAGAGAGAAA 1 chrIII-NC_003074:6250572 ( 77) AAAACTGAAG 1 chrI-NC_003070:54911-550 ( 47) AAAGGTAAAA 1 chrV-NC_003076:1395582-1 ( 4) AAAAGGACAA 1 chrV-NC_003076:23785222- ( 77) AAAACTAAAA 1 chrIV-NC_003075:630489-6 ( 45) AAAACAGAAA 1 chrII-NC_003071:17584835 ( 32) AAAAGAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 10.2321 E= 1.1e+002 149 -1257 -69 -1257 166 -1257 -1257 -1257 129 -1257 31 -1257 157 -1257 -150 -1257 -1257 -117 231 -1257 13 -150 50 6 98 -1257 103 -1257 135 -249 -18 -1257 166 -1257 -1257 -1257 86 -1257 120 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 61 E= 1.1e+002 0.885246 0.000000 0.114754 0.000000 1.000000 0.000000 0.000000 0.000000 0.770492 0.000000 0.229508 0.000000 0.934426 0.000000 0.065574 0.000000 0.000000 0.081967 0.918033 0.000000 0.344262 0.065574 0.262295 0.327869 0.622951 0.000000 0.377049 0.000000 0.803279 0.032787 0.163934 0.000000 1.000000 0.000000 0.000000 0.000000 0.573770 0.000000 0.426230 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- AA[AG]AG[ATG][AG]AA[AG] -------------------------------------------------------------------------------- Time 230.22 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 10 sites = 6 llr = 82 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :2:8:::3:: pos.-specific C ::::aa::aa probability G :8a:::a::: matrix T a::2:::7:: bits 2.4 * *** ** 2.2 * *** ** 1.9 * *** ** 1.7 *** *** ** Relative 1.5 *** *** ** Entropy 1.2 *** *** ** (19.7 bits) 1.0 ******* ** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel TGGACCGTCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:5227509-5 67 2.31e-07 CACGTGGACG TGGACCGTCC ATGAAATATA chrII-NC_003071:18635619 53 2.31e-07 AGCATGTTTA TGGACCGTCC AGGCTCCTCG chrV-NC_003076:2234877-2 39 4.64e-07 TAGCTTAATA TGGACCGACC GTATCTTCTT chrI-NC_003070:11067773- 71 4.64e-07 TACGAAGATG TGGACCGACC ATGTGCTTTT chrV-NC_003076:7695385-7 46 6.93e-07 TATAGTTCAC TGGTCCGTCC AATGCAATCT chrV-NC_003076:17550113- 28 1.09e-06 GAAATGAATC TAGACCGTCC TCTAAAATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:5227509-5 2.3e-07 66_[+6]_24 chrII-NC_003071:18635619 2.3e-07 52_[+6]_38 chrV-NC_003076:2234877-2 4.6e-07 38_[+6]_52 chrI-NC_003070:11067773- 4.6e-07 70_[+6]_20 chrV-NC_003076:7695385-7 6.9e-07 45_[+6]_45 chrV-NC_003076:17550113- 1.1e-06 27_[+6]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=10 seqs=6 chrV-NC_003076:5227509-5 ( 67) TGGACCGTCC 1 chrII-NC_003071:18635619 ( 53) TGGACCGTCC 1 chrV-NC_003076:2234877-2 ( 39) TGGACCGACC 1 chrI-NC_003070:11067773- ( 71) TGGACCGACC 1 chrV-NC_003076:7695385-7 ( 46) TGGTCCGTCC 1 chrV-NC_003076:17550113- ( 28) TAGACCGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 13.3359 E= 5.6e+003 -923 -923 -923 167 -92 -923 217 -923 -923 -923 243 -923 140 -923 -923 -91 -923 243 -923 -923 -923 243 -923 -923 -923 -923 243 -923 8 -923 -923 108 -923 243 -923 -923 -923 243 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 6 E= 5.6e+003 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- TGGACCG[TA]CC -------------------------------------------------------------------------------- Time 270.00 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 10 sites = 17 llr = 182 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :7:9:1::32 pos.-specific C 1:9:91:::8 probability G 821119:a:: matrix T 111:::a:71 bits 2.4 * 2.2 * * 1.9 * * 1.7 * **** Relative 1.5 * ****** Entropy 1.2 * ****** * (15.5 bits) 1.0 * ****** * 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel GACACGTGTC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:3396241-3 24 3.95e-07 TACCGAAGCT GACACGTGTC ACGTAAAGCA chrI-NC_003070:27596186- 70 3.95e-07 GGTTTGTGAC GACACGTGTC TACTATCATT chrII-NC_003071:18414202 1 6.26e-07 . GGCACGTGTC ATCTCGTATG chrV-NC_003076:9133297-9 37 1.02e-06 ACCCCATTAC GACACGTGAC AGGCTGGGCA chrII-NC_003071:18922556 81 1.65e-06 TTGGTAAATT CACACGTGTC TCATCGTCAT chrIV-NC_003075:13686062 2 3.57e-06 C GGCACGTGTA AAGAAGAACC chrIV-NC_003075:17002611 45 5.15e-06 ATATAGTGCT GACACCTGTC CAATCCCCTG chrI-NC_003070:6174588-6 66 5.15e-06 GGGACTGTTG GACAGGTGTC AAAGGTTCCG chrII-NC_003071:17809800 5 5.97e-06 CAGA GACACGTGAA CAATCAGAAT chrV-NC_003076:21763572- 91 6.87e-06 AAGAGGAAAT GACACGTGTT chrIII-NC_003074:9969304 12 7.54e-06 CGTACGATTA TACACGTGTC GGTTGTGAAA chrV-NC_003076:3508558-3 77 1.02e-05 AAGTTTACTT GACACATGTC TCTACTCTTT chrV-NC_003076:10649957- 86 1.02e-05 AGAAGAGGAG GTCACGTGAC GAGTC chrI-NC_003070:26581149- 15 1.02e-05 TCAGAAAGGT GATACGTGTC GTGACTCAGG chrII-NC_003071:15099969 51 1.23e-05 AGAGGGAAGT GGCGCGTGAC GTAAGACCTA chrII-NC_003071:16221745 12 1.49e-05 ACGTAGGATA CACACGTGTA CATCAAATCT chrI-NC_003070:10693148- 19 1.76e-05 AGTTGGAGAT GGGACGTGAC ATAATACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:3396241-3 3.9e-07 23_[+7]_67 chrI-NC_003070:27596186- 3.9e-07 69_[+7]_21 chrII-NC_003071:18414202 6.3e-07 [+7]_90 chrV-NC_003076:9133297-9 1e-06 36_[+7]_54 chrII-NC_003071:18922556 1.7e-06 80_[+7]_10 chrIV-NC_003075:13686062 3.6e-06 1_[+7]_89 chrIV-NC_003075:17002611 5.2e-06 44_[+7]_46 chrI-NC_003070:6174588-6 5.2e-06 65_[+7]_25 chrII-NC_003071:17809800 6e-06 4_[+7]_86 chrV-NC_003076:21763572- 6.9e-06 90_[+7] chrIII-NC_003074:9969304 7.5e-06 11_[+7]_79 chrV-NC_003076:3508558-3 1e-05 76_[+7]_14 chrV-NC_003076:10649957- 1e-05 85_[+7]_5 chrI-NC_003070:26581149- 1e-05 14_[+7]_76 chrII-NC_003071:15099969 1.2e-05 50_[+7]_40 chrII-NC_003071:16221745 1.5e-05 11_[+7]_79 chrI-NC_003070:10693148- 1.8e-05 18_[+7]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=10 seqs=17 chrV-NC_003076:3396241-3 ( 24) GACACGTGTC 1 chrI-NC_003070:27596186- ( 70) GACACGTGTC 1 chrII-NC_003071:18414202 ( 1) GGCACGTGTC 1 chrV-NC_003076:9133297-9 ( 37) GACACGTGAC 1 chrII-NC_003071:18922556 ( 81) CACACGTGTC 1 chrIV-NC_003075:13686062 ( 2) GGCACGTGTA 1 chrIV-NC_003075:17002611 ( 45) GACACCTGTC 1 chrI-NC_003070:6174588-6 ( 66) GACAGGTGTC 1 chrII-NC_003071:17809800 ( 5) GACACGTGAA 1 chrV-NC_003076:21763572- ( 91) GACACGTGTT 1 chrIII-NC_003074:9969304 ( 12) TACACGTGTC 1 chrV-NC_003076:3508558-3 ( 77) GACACATGTC 1 chrV-NC_003076:10649957- ( 86) GTCACGTGAC 1 chrI-NC_003070:26581149- ( 15) GATACGTGTC 1 chrII-NC_003071:15099969 ( 51) GGCGCGTGAC 1 chrII-NC_003071:16221745 ( 12) CACACGTGTA 1 chrI-NC_003070:10693148- ( 19) GGGACGTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 12.1805 E= 1.8e+003 -1073 -65 215 -241 116 -1073 35 -241 -1073 225 -165 -241 158 -1073 -165 -1073 -1073 235 -165 -1073 -242 -165 225 -1073 -1073 -1073 -1073 167 -1073 -1073 243 -1073 -10 -1073 -1073 117 -84 205 -1073 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 17 E= 1.8e+003 0.000000 0.117647 0.823529 0.058824 0.705882 0.000000 0.235294 0.058824 0.000000 0.882353 0.058824 0.058824 0.941176 0.000000 0.058824 0.000000 0.000000 0.941176 0.058824 0.000000 0.058824 0.058824 0.882353 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.294118 0.000000 0.000000 0.705882 0.176471 0.764706 0.000000 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- G[AG]CACGTG[TA]C -------------------------------------------------------------------------------- Time 309.80 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 10 sites = 3 llr = 45 E-value = 5.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A ::::::a::: pos.-specific C :::a:::::a probability G aaa::7:aa: matrix T ::::a3:::: bits 2.4 **** *** 2.2 **** *** 1.9 **** *** 1.7 ***** **** Relative 1.5 ***** **** Entropy 1.2 ********** (21.6 bits) 1.0 ********** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel GGGCTGAGGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:5863206-5 58 1.36e-07 TGGCATGTGG GGGCTGAGGC AATTGCGTGT chrII-NC_003071:15009657 79 1.36e-07 TAGAAATGGT GGGCTGAGGC ACACGTGCTA chrIV-NC_003075:13854244 9 3.67e-07 TAAGTTTT GGGCTTAGGC CCAAATCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:5863206-5 1.4e-07 57_[+8]_33 chrII-NC_003071:15009657 1.4e-07 78_[+8]_12 chrIV-NC_003075:13854244 3.7e-07 8_[+8]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=10 seqs=3 chrV-NC_003076:5863206-5 ( 58) GGGCTGAGGC 1 chrII-NC_003071:15009657 ( 79) GGGCTGAGGC 1 chrIV-NC_003075:13854244 ( 9) GGGCTTAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 14.336 E= 5.9e+004 -823 -823 243 -823 -823 -823 243 -823 -823 -823 243 -823 -823 243 -823 -823 -823 -823 -823 167 -823 -823 185 8 166 -823 -823 -823 -823 -823 243 -823 -823 -823 243 -823 -823 243 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 3 E= 5.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- GGGCT[GT]AGGC -------------------------------------------------------------------------------- Time 349.43 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 8 sites = 2 llr = 26 E-value = 7.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::aa:: probability G :a:a::aa matrix T ::a::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGTGCCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI-NC_003070:5443879-5 26 2.33e-06 TTATGGCTTG CGTGCCGG TTCAGTTACA chrI-NC_003070:11446219- 37 2.33e-06 TAACCCCACT CGTGCCGG CTTCCTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI-NC_003070:5443879-5 2.3e-06 25_[+9]_67 chrI-NC_003070:11446219- 2.3e-06 36_[+9]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=8 seqs=2 chrI-NC_003070:5443879-5 ( 26) CGTGCCGG 1 chrI-NC_003070:11446219- ( 37) CGTGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 46500 bayes= 14.5049 E= 7.9e+005 -765 243 -765 -765 -765 -765 243 -765 -765 -765 -765 166 -765 -765 243 -765 -765 243 -765 -765 -765 243 -765 -765 -765 -765 243 -765 -765 -765 243 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.9e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- CGTGCCGG -------------------------------------------------------------------------------- Time 389.20 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 9 sites = 2 llr = 28 E-value = 9.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :::a::::: pos.-specific C :aa:a:::: probability G a::::a:aa matrix T ::::::a:: bits 2.4 *** ** ** 2.2 *** ** ** 1.9 *** ** ** 1.7 ********* Relative 1.5 ********* Entropy 1.2 ********* (20.4 bits) 1.0 ********* 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel GCCACGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- chrIV-NC_003075:13013959 68 7.36e-07 CTTACAAAAA GCCACGTGG ACTGATCGAT chrIV-NC_003075:13016297 33 7.36e-07 CTCTGTGAAT GCCACGTGG ATAAGAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV-NC_003075:13013959 7.4e-07 67_[+10]_24 chrIV-NC_003075:13016297 7.4e-07 32_[+10]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=9 seqs=2 chrIV-NC_003075:13013959 ( 68) GCCACGTGG 1 chrIV-NC_003075:13016297 ( 33) GCCACGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 46000 bayes= 13.6412 E= 9.0e+005 -765 -765 243 -765 -765 243 -765 -765 -765 243 -765 -765 166 -765 -765 -765 -765 243 -765 -765 -765 -765 243 -765 -765 -765 -765 166 -765 -765 243 -765 -765 -765 243 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 2 E= 9.0e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- GCCACGTGG -------------------------------------------------------------------------------- Time 429.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII-NC_003074:8244862 6.27e-01 100 chrIII-NC_003074:4121906 6.71e-01 100 chrIII-NC_003074:2060654 1.73e-02 12_[+1(6.61e-07)]_78 chrIII-NC_003074:763527- 7.16e-01 100 chrIII-NC_003074:1847014 1.47e-01 100 chrIII-NC_003074:2058744 1.93e-02 12_[+4(6.83e-07)]_78 chrIII-NC_003074:9959818 1.33e-01 70_[+6(1.81e-05)]_20 chrIII-NC_003074:2037912 3.86e-01 100 chrIII-NC_003074:5247210 6.97e-02 49_[+3(1.40e-05)]_41 chrIII-NC_003074:5121290 1.21e-04 25_[+3(5.73e-05)]_25_[+2(2.64e-05)]_11_[+1(1.51e-05)]_9 chrIII-NC_003074:7211460 7.85e-03 50_[+4(6.83e-07)]_40 chrIII-NC_003074:3366458 9.55e-01 100 chrIII-NC_003074:2295423 4.66e-01 100 chrIII-NC_003074:7397124 9.98e-01 100 chrIII-NC_003074:1315461 5.32e-01 100 chrIII-NC_003074:2058849 7.23e-01 100 chrIII-NC_003074:2232387 7.49e-01 100 chrIII-NC_003074:1928100 1.45e-02 20_[+4(4.86e-05)]_9_[+3(1.96e-05)]_51 chrIII-NC_003074:2267043 8.79e-02 100 chrIII-NC_003074:2137197 3.96e-01 100 chrIII-NC_003074:4606048 5.33e-02 88_[+3(2.62e-05)]_2 chrIII-NC_003074:1916823 1.80e-02 10_[+6(4.61e-05)]_80 chrIII-NC_003074:2263425 2.19e-02 21_[+1(9.75e-06)]_45_[+3(7.68e-05)]_14 chrIII-NC_003074:4829216 2.85e-01 100 chrIII-NC_003074:5293166 2.76e-02 35_[+3(4.10e-05)]_55 chrIII-NC_003074:467781- 1.43e-02 68_[+1(5.78e-05)]_22 chrIII-NC_003074:7989294 3.80e-02 81_[+2(1.25e-05)]_9 chrIII-NC_003074:2114488 9.53e-01 100 chrIII-NC_003074:5109721 5.94e-01 100 chrIII-NC_003074:4402902 1.78e-01 100 chrIII-NC_003074:9812872 5.24e-02 60_[+2(9.06e-05)]_30 chrIII-NC_003074:1791000 7.39e-02 100 chrIII-NC_003074:1216726 1.45e-01 29_[+1(2.60e-05)]_26_[+1(3.68e-05)]_25 chrIII-NC_003074:2117737 2.37e-02 83_[+1(1.93e-05)]_7 chrIII-NC_003074:2329158 7.34e-03 100 chrIII-NC_003074:2058364 1.04e-03 9_[+4(5.99e-05)]_15_[+2(1.13e-05)]_56 chrIII-NC_003074:7789683 6.63e-04 37_[+1(1.30e-05)]_17_[+4(2.10e-05)]_26 chrIII-NC_003074:1797331 1.50e-01 100 chrIII-NC_003074:2315534 1.34e-03 78_[+3(3.92e-07)]_12 chrIII-NC_003074:7297913 6.48e-02 54_[+2(8.39e-05)]_22_[+1(9.24e-05)]_4 chrIII-NC_003074:2345891 6.75e-02 37_[+5(1.93e-05)]_53 chrIII-NC_003074:2006936 6.08e-01 100 chrIII-NC_003074:2058578 5.07e-02 2_[+4(9.35e-05)]_88 chrIII-NC_003074:7507408 9.20e-04 27_[+1(1.30e-05)]_5_[+3(5.46e-06)]_48 chrIII-NC_003074:1086707 2.78e-01 100 chrIII-NC_003074:2336099 3.98e-01 100 chrIII-NC_003074:1373635 4.49e-03 49_[+3(2.20e-05)]_12_[+1(2.91e-06)]_2_[+1(4.44e-05)]_7 chrIII-NC_003074:2274117 6.37e-01 100 chrIII-NC_003074:8238743 3.04e-02 75_[+3(6.59e-05)]_15 chrIII-NC_003074:9969304 1.82e-03 11_[+7(7.54e-06)]_79 chrIII-NC_003074:5920270 2.75e-01 100 chrIII-NC_003074:6158020 4.74e-01 19_[+3(9.42e-05)]_71 chrIII-NC_003074:2148924 7.36e-01 100 chrIII-NC_003074:8325701 4.27e-01 100 chrIII-NC_003074:2293953 1.02e-01 45_[+3(3.37e-05)]_45 chrIII-NC_003074:1136472 3.80e-01 40_[+2(1.25e-05)]_50 chrIII-NC_003074:2441566 2.49e-01 100 chrIII-NC_003074:2123354 6.90e-02 21_[+2(1.74e-05)]_42_[+2(8.39e-05)]_17 chrIII-NC_003074:7997237 6.11e-01 100 chrIII-NC_003074:1880983 4.17e-04 14_[+3(7.68e-05)]_47_[+4(6.83e-07)]_19 chrIII-NC_003074:5299080 4.03e-01 60_[+2(2.31e-05)]_30 chrIII-NC_003074:5222133 6.33e-01 38_[+1(6.15e-05)]_52 chrIII-NC_003074:2012117 1.33e-01 100 chrIII-NC_003074:2073939 1.34e-01 100 chrIII-NC_003074:5954468 1.47e-02 78_[+2(1.13e-05)]_12 chrIII-NC_003074:6515592 8.74e-01 100 chrIII-NC_003074:6780452 3.08e-02 9_[+7(4.57e-05)]_81 chrIII-NC_003074:2048555 5.44e-03 84_[+3(9.67e-06)]_6 chrIII-NC_003074:4161767 3.46e-04 12_[+5(1.93e-05)]_58_[+4(1.37e-06)]_10 chrIII-NC_003074:3098128 1.22e-03 79_[+3(5.46e-06)]_11 chrIII-NC_003074:2232815 3.75e-01 100 chrIII-NC_003074:2173213 8.80e-01 100 chrIII-NC_003074:2242616 1.39e-03 33_[+3(3.88e-05)]_35_[+4(8.46e-06)]_12 chrIII-NC_003074:1803827 1.78e-01 88_[+1(2.60e-05)]_2 chrIII-NC_003074:4146195 2.64e-04 25_[+4(5.54e-06)]_7_[+5(3.95e-05)]_48 chrIII-NC_003074:2114159 9.91e-01 100 chrIII-NC_003074:6250572 1.12e-03 50_[+3(2.20e-05)]_40 chrIII-NC_003074:5236746 3.20e-02 86_[+2(5.65e-05)]_4 chrIII-NC_003074:4732994 3.53e-03 38_[+2(3.32e-06)]_52 chrII-NC_003071:11925629 2.34e-01 61_[+3(3.07e-05)]_29 chrII-NC_003071:15499356 9.22e-01 100 chrII-NC_003071:13280749 2.02e-01 100 chrII-NC_003071:17811215 8.46e-01 100 chrII-NC_003071:18801878 4.27e-03 25_[+5(3.16e-06)]_65 chrII-NC_003071:14339779 9.80e-01 100 chrII-NC_003071:17584835 5.95e-01 100 chrII-NC_003071:17819844 2.10e-07 6_[+5(3.16e-06)]_21_[+4(1.07e-05)]_8_[+1(2.60e-05)]_35 chrII-NC_003071:14733361 5.44e-01 100 chrII-NC_003071:18114690 2.59e-01 100 chrII-NC_003071:7940337- 3.18e-02 12_[+3(1.96e-05)]_40_[+1(9.87e-05)]_28 chrII-NC_003071:17446382 4.18e-02 49_[+3(3.37e-05)]_41 chrII-NC_003071:19298962 6.52e-03 54_[+1(1.30e-05)]_20_[+3(2.62e-05)]_6 chrII-NC_003071:14735538 2.07e-02 66_[+5(3.95e-05)]_24 chrII-NC_003071:9577581- 2.10e-02 4_[+4(4.40e-05)]_35_[+2(1.25e-05)]_41 chrII-NC_003071:15784393 6.37e-01 2_[+1(2.60e-05)]_88 chrII-NC_003071:893522-8 1.68e-03 70_[+4(6.83e-07)]_20 chrII-NC_003071:11771593 6.52e-01 100 chrII-NC_003071:8430434- 1.47e-03 53_[+5(1.93e-05)]_37 chrII-NC_003071:14194627 1.46e-01 100 chrII-NC_003071:18635619 1.38e-03 52_[+6(2.31e-07)]_22_[+6(2.71e-05)]_6 chrII-NC_003071:8340177- 1.57e-03 55_[+3(6.59e-05)]_35 chrII-NC_003071:432261-4 2.14e-03 31_[+4(2.98e-05)]_46_[+4(6.83e-07)]_3 chrII-NC_003071:16559073 3.17e-01 51_[+3(9.67e-06)]_39 chrII-NC_003071:15206977 4.48e-03 42_[+2(1.36e-06)]_48 chrII-NC_003071:16641452 3.44e-01 100 chrII-NC_003071:19013765 1.41e-01 42_[+3(6.82e-06)]_48 chrII-NC_003071:15099969 1.66e-04 50_[+7(1.23e-05)]_40 chrII-NC_003071:12774547 4.14e-03 45_[+2(1.40e-05)]_45 chrII-NC_003071:17743078 1.71e-02 7_[+1(5.78e-05)]_83 chrII-NC_003071:18811109 8.02e-03 23_[+3(8.78e-05)]_19_[+2(2.31e-05)]_38 chrII-NC_003071:18809221 8.48e-01 100 chrII-NC_003071:13275315 2.31e-02 100 chrII-NC_003071:9580157- 1.04e-01 28_[+1(6.61e-07)]_12_[+1(7.76e-05)]_8_[+1(4.03e-06)]_22 chrII-NC_003071:15690357 1.83e-01 58_[+1(2.60e-05)]_32 chrII-NC_003071:9037903- 3.54e-04 19_[+2(3.09e-05)]_33_[+3(2.62e-05)]_28 chrII-NC_003071:9523112- 2.66e-04 50_[+1(2.91e-05)]_40 chrII-NC_003071:18813111 2.29e-01 59_[+3(3.48e-05)]_31 chrII-NC_003071:18609166 7.58e-01 100 chrII-NC_003071:14645113 8.49e-02 24_[+1(5.94e-06)]_66 chrII-NC_003071:999336-9 2.29e-02 54_[+1(6.61e-07)]_36 chrII-NC_003071:16221745 2.22e-03 11_[+7(1.49e-05)]_10_[+1(6.15e-05)]_27_[+3(9.42e-05)]_22 chrII-NC_003071:17809800 1.12e-02 4_[+7(5.97e-06)]_28_[+5(4.90e-05)]_48 chrII-NC_003071:436677-4 9.67e-02 70_[+1(6.61e-07)]_20 chrII-NC_003071:19071050 1.28e-01 67_[+3(1.06e-06)]_23 chrII-NC_003071:16127692 2.50e-01 100 chrII-NC_003071:1136739- 8.37e-02 48_[+3(1.40e-05)]_42 chrII-NC_003071:507658-5 8.87e-01 100 chrII-NC_003071:18414202 3.75e-04 [+7(6.26e-07)]_26_[+3(9.67e-06)]_54 chrII-NC_003071:383333-3 1.56e-02 43_[+2(3.32e-06)]_47 chrII-NC_003071:14343671 2.80e-02 36_[+4(2.50e-05)]_54 chrII-NC_003071:519724-5 1.17e-01 17_[+5(7.61e-05)]_23_[+2(9.06e-05)]_40 chrII-NC_003071:13276569 3.31e-02 100 chrII-NC_003071:17808033 3.80e-02 35_[+3(4.57e-06)]_14_[+1(9.75e-06)]_31 chrII-NC_003071:14956317 1.33e-01 41_[+2(3.32e-06)]_49 chrII-NC_003071:17791516 7.78e-03 60_[+5(4.90e-05)]_30 chrII-NC_003071:17240934 1.67e-01 100 chrII-NC_003071:10191589 1.43e-01 50_[+3(6.59e-05)]_40 chrII-NC_003071:15275171 1.56e-04 2_[+8(3.42e-05)]_88 chrII-NC_003071:12941145 6.26e-05 55_[+2(8.63e-06)]_2_[+4(6.42e-05)]_23 chrII-NC_003071:15009657 4.57e-05 78_[+8(1.36e-07)]_12 chrII-NC_003071:12002503 4.86e-01 100 chrII-NC_003071:14224191 3.93e-01 29_[+2(3.09e-05)]_61 chrII-NC_003071:435556-4 6.85e-02 100 chrII-NC_003071:14331359 3.07e-02 41_[+3(1.14e-05)]_49 chrII-NC_003071:8692385- 5.17e-05 3_[+4(2.98e-05)]_32_[+2(7.71e-05)]_1_[+5(1.93e-05)]_34 chrII-NC_003071:14984539 6.91e-02 100 chrII-NC_003071:11871421 3.96e-03 7_[+1(4.03e-06)]_24_[+3(4.57e-06)]_49 chrII-NC_003071:18714673 2.57e-01 100 chrII-NC_003071:18922556 7.00e-03 80_[+7(1.65e-06)]_10 chrII-NC_003071:16504451 1.44e-03 48_[+2(1.40e-05)]_42 chrII-NC_003071:14485962 7.25e-02 100 chrII-NC_003071:14209292 1.59e-01 100 chrII-NC_003071:19198253 2.67e-02 24_[+1(6.15e-05)]_8_[+3(2.11e-06)]_48 chrII-NC_003071:16506905 9.95e-01 100 chrII-NC_003071:18423065 1.68e-02 26_[+5(3.16e-06)]_64 chrI-NC_003070:30187300- 3.55e-01 100 chrI-NC_003070:7663868-7 3.96e-01 100 chrI-NC_003070:11446219- 3.58e-03 36_[+9(2.33e-06)]_24_[+5(4.90e-05)]_22 chrI-NC_003070:8305339-8 1.29e-01 100 chrI-NC_003070:17424563- 9.61e-01 100 chrI-NC_003070:26476526- 6.06e-01 100 chrI-NC_003070:10000490- 1.60e-02 57_[+1(6.61e-07)]_33 chrI-NC_003070:23267188- 1.02e-02 100 chrI-NC_003070:27947367- 6.26e-01 100 chrI-NC_003070:27977232- 5.11e-01 100 chrI-NC_003070:9950825-9 4.68e-01 90_[+2(5.06e-05)] chrI-NC_003070:11621892- 2.54e-02 9_[+4(2.10e-05)]_81 chrI-NC_003070:11061463- 1.46e-03 84_[+1(2.60e-05)]_6 chrI-NC_003070:20762967- 7.20e-02 46_[+4(8.46e-06)]_44 chrI-NC_003070:8595088-8 4.47e-01 52_[+2(7.03e-05)]_38 chrI-NC_003070:19762335- 1.59e-01 35_[+5(1.93e-05)]_55 chrI-NC_003070:8719417-8 7.37e-02 100 chrI-NC_003070:23061517- 2.26e-01 100 chrI-NC_003070:25682284- 2.25e-02 72_[+5(3.95e-05)]_18 chrI-NC_003070:10693148- 3.28e-03 18_[+7(1.76e-05)]_72 chrI-NC_003070:10228768- 9.03e-01 100 chrI-NC_003070:8983930-8 8.60e-01 100 chrI-NC_003070:8839918-8 8.06e-01 100 chrI-NC_003070:1469218-1 1.15e-01 100 chrI-NC_003070:3287515-3 6.12e-02 5_[+3(5.73e-05)]_85 chrI-NC_003070:6579466-6 7.12e-03 56_[+1(6.61e-07)]_6_[+1(5.78e-05)]_18 chrI-NC_003070:20186963- 2.34e-03 17_[+4(2.10e-05)]_73 chrI-NC_003070:28189210- 2.50e-03 6_[+4(2.22e-05)]_84 chrI-NC_003070:8852838-8 5.30e-02 100 chrI-NC_003070:10726311- 1.75e-04 37_[+5(3.95e-05)]_30_[+3(3.07e-05)]_13 chrI-NC_003070:25226425- 2.05e-01 100 chrI-NC_003070:26516887- 9.81e-01 100 chrI-NC_003070:28358380- 6.07e-01 100 chrI-NC_003070:6837297-6 9.31e-01 100 chrI-NC_003070:26059448- 2.79e-02 12_[+3(4.57e-06)]_78 chrI-NC_003070:21192322- 3.14e-03 49_[+5(3.16e-06)]_41 chrI-NC_003070:8598762-8 3.28e-02 100 chrI-NC_003070:20954134- 1.74e-01 100 chrI-NC_003070:7142957-7 1.36e-03 49_[+3(6.82e-06)]_41 chrI-NC_003070:4706360-4 1.84e-01 45_[+8(1.37e-05)]_45 chrI-NC_003070:7384592-7 2.55e-02 7_[+4(1.60e-05)]_37_[+1(6.15e-05)]_36 chrI-NC_003070:20566078- 4.64e-01 100 chrI-NC_003070:1845386-1 2.50e-01 100 chrI-NC_003070:18360493- 2.59e-01 100 chrI-NC_003070:8717829-8 1.10e-01 74_[+1(7.76e-05)]_16 chrI-NC_003070:1188280-1 2.02e-01 [+3(1.32e-05)]_90 chrI-NC_003070:567094-56 6.32e-02 100 chrI-NC_003070:28122998- 4.31e-01 100 chrI-NC_003070:3571887-3 1.14e-01 30_[+3(1.96e-05)]_60 chrI-NC_003070:11067773- 7.01e-03 70_[+6(4.64e-07)]_20 chrI-NC_003070:22387821- 7.86e-01 100 chrI-NC_003070:4708486-4 7.69e-01 100 chrI-NC_003070:5513978-5 3.75e-02 12_[+4(5.22e-05)]_78 chrI-NC_003070:6400339-6 5.52e-01 100 chrI-NC_003070:9990630-9 1.12e-01 100 chrI-NC_003070:4904674-4 4.47e-03 13_[+5(3.95e-05)]_46_[+3(9.67e-06)]_21 chrI-NC_003070:54911-550 4.52e-02 100 chrI-NC_003070:772515-77 4.08e-01 100 chrI-NC_003070:28117313- 2.57e-03 32_[+1(2.60e-05)]_[+2(4.50e-05)]_48 chrI-NC_003070:26575417- 3.79e-02 20_[+6(7.96e-05)]_70 chrI-NC_003070:25986065- 6.93e-01 100 chrI-NC_003070:25022250- 1.70e-01 57_[+5(3.95e-05)]_33 chrI-NC_003070:6459718-6 8.06e-02 46_[+2(4.00e-05)]_44 chrI-NC_003070:26654751- 1.44e-01 100 chrI-NC_003070:20723351- 2.79e-02 9_[+2(1.56e-05)]_81 chrI-NC_003070:26011675- 4.18e-05 44_[+5(3.16e-06)]_46 chrI-NC_003070:11033867- 3.09e-02 2_[+5(7.61e-05)]_88 chrI-NC_003070:10353964- 1.28e-01 8_[+7(8.70e-05)]_82 chrI-NC_003070:9264427-9 4.17e-01 100 chrI-NC_003070:29764290- 2.37e-01 31_[+1(9.75e-06)]_5_[+1(1.51e-05)]_44 chrI-NC_003070:20445957- 5.46e-01 100 chrI-NC_003070:25681126- 7.83e-01 100 chrI-NC_003070:6843352-6 7.66e-03 26_[+1(2.91e-06)]_64 chrI-NC_003070:11628844- 4.25e-01 78_[+1(4.03e-06)]_12 chrI-NC_003070:11373372- 1.29e-03 54_[+5(3.95e-05)]_36 chrI-NC_003070:28673890- 1.77e-01 79_[+2(4.00e-05)]_11 chrI-NC_003070:553810-55 5.34e-01 100 chrI-NC_003070:8075698-8 7.92e-02 100 chrI-NC_003070:12455681- 3.86e-02 33_[+2(5.65e-05)]_57 chrI-NC_003070:25988851- 6.09e-01 100 chrI-NC_003070:7930462-7 2.11e-06 18_[+3(1.63e-05)]_17_[+5(3.16e-06)]_45 chrI-NC_003070:20956381- 3.23e-02 22_[+1(6.61e-07)]_23_[+1(6.61e-07)]_35 chrI-NC_003070:10679066- 7.97e-03 33_[+4(3.05e-05)]_10_[+2(8.63e-06)]_37 chrI-NC_003070:29744031- 6.06e-01 100 chrI-NC_003070:10802104- 3.50e-01 100 chrI-NC_003070:7515017-7 1.39e-01 15_[+5(6.16e-05)]_75 chrI-NC_003070:3101296-3 2.94e-01 90_[+3(5.73e-05)] chrI-NC_003070:4600560-4 2.91e-02 34_[+2(7.03e-05)]_22_[+5(4.90e-05)]_24 chrI-NC_003070:18690442- 1.85e-03 52_[+2(1.36e-06)]_38 chrI-NC_003070:4549734-4 3.68e-01 100 chrI-NC_003070:27363804- 1.98e-01 26_[+5(1.93e-05)]_64 chrI-NC_003070:24034269- 3.05e-01 100 chrI-NC_003070:25046712- 1.85e-01 87_[+2(4.00e-05)]_3 chrI-NC_003070:8727068-8 5.28e-02 30_[+4(2.98e-05)]_43_[+4(6.83e-07)]_7 chrI-NC_003070:22936883- 2.41e-01 100 chrI-NC_003070:13228453- 7.09e-03 16_[+1(9.75e-06)]_38_[+5(3.95e-05)]_26 chrI-NC_003070:10978109- 2.40e-01 90_[+4(2.10e-05)] chrI-NC_003070:9267178-9 2.76e-03 9_[+4(5.54e-06)]_29_[+3(4.57e-05)]_42 chrI-NC_003070:9778055-9 2.12e-01 100 chrI-NC_003070:5086108-5 7.26e-02 73_[+3(5.73e-05)]_17 chrI-NC_003070:9101220-9 3.61e-03 70_[+2(5.96e-06)]_20 chrI-NC_003070:29755743- 1.86e-01 100 chrI-NC_003070:25228955- 3.72e-02 43_[+3(3.37e-05)]_47 chrI-NC_003070:26727714- 9.48e-03 6_[+4(4.33e-05)]_84 chrI-NC_003070:1714035-1 1.89e-01 100 chrI-NC_003070:28183872- 2.54e-01 69_[+5(1.93e-05)]_21 chrI-NC_003070:4231438-4 9.66e-01 100 chrI-NC_003070:10566054- 2.21e-01 100 chrI-NC_003070:25391261- 2.61e-01 100 chrI-NC_003070:2120839-2 7.96e-02 100 chrI-NC_003070:6844883-6 7.32e-01 100 chrI-NC_003070:10795059- 3.89e-02 100 chrI-NC_003070:27713510- 8.56e-02 49_[+2(1.36e-06)]_41 chrI-NC_003070:19848599- 6.68e-03 2_[+4(2.50e-05)]_4_[+4(4.86e-05)]_34_[+3(4.10e-05)]_30 chrI-NC_003070:25319703- 1.87e-02 75_[+5(3.95e-05)]_15 chrI-NC_003070:6836757-6 2.39e-01 100 chrI-NC_003070:3273070-3 5.76e-01 100 chrI-NC_003070:9269999-9 1.92e-03 80_[+1(2.60e-05)]_10 chrI-NC_003070:29788413- 6.68e-02 45_[+2(1.40e-05)]_45 chrI-NC_003070:26100224- 7.85e-01 100 chrI-NC_003070:28236993- 6.81e-03 8_[+4(9.54e-06)]_82 chrI-NC_003070:17506712- 1.48e-01 11_[+2(3.09e-05)]_79 chrI-NC_003070:27292918- 2.12e-02 42_[+2(7.28e-06)]_48 chrI-NC_003070:983778-98 3.57e-01 100 chrI-NC_003070:28366917- 4.06e-01 100 chrI-NC_003070:4654774-4 8.03e-01 100 chrI-NC_003070:29216786- 1.22e-01 100 chrI-NC_003070:5851705-5 8.63e-01 100 chrI-NC_003070:5443879-5 2.37e-01 25_[+9(2.33e-06)]_67 chrI-NC_003070:23075622- 4.47e-02 76_[+2(1.25e-05)]_14 chrI-NC_003070:9696429-9 7.63e-01 100 chrI-NC_003070:22814110- 8.96e-02 29_[+3(3.37e-05)]_61 chrI-NC_003070:5004165-5 4.56e-01 81_[+3(9.42e-05)]_9 chrI-NC_003070:27042789- 6.11e-01 100 chrI-NC_003070:27484286- 3.65e-01 100 chrI-NC_003070:27596186- 4.81e-03 69_[+7(3.95e-07)]_21 chrI-NC_003070:18399009- 2.41e-01 42_[+3(1.14e-05)]_48 chrI-NC_003070:6916711-6 2.66e-03 69_[+3(1.06e-06)]_21 chrI-NC_003070:28378932- 2.11e-01 100 chrI-NC_003070:365450-36 3.65e-01 100 chrI-NC_003070:11630791- 6.79e-04 7_[+5(3.95e-05)]_1_[+4(9.03e-05)]_14_[+2(1.93e-05)]_16_[+1(3.68e-05)]_1_[+1(2.60e-05)]_11 chrI-NC_003070:8298211-8 4.11e-01 100 chrI-NC_003070:26581149- 2.26e-04 14_[+7(1.02e-05)]_25_[+2(3.59e-05)]_41 chrI-NC_003070:2395052-2 7.21e-01 100 chrI-NC_003070:6174588-6 1.26e-04 5_[+3(1.32e-05)]_50_[+7(5.15e-06)]_25 chrIV-NC_003075:6794586- 6.51e-04 67_[+2(1.74e-05)]_23 chrIV-NC_003075:5739029- 2.64e-01 62_[+1(9.24e-05)]_28 chrIV-NC_003075:18361675 6.38e-01 100 chrIV-NC_003075:14196781 2.61e-01 100 chrIV-NC_003075:17585301 4.03e-01 100 chrIV-NC_003075:17002611 1.46e-03 [+4(2.10e-05)]_34_[+7(5.15e-06)]_9_[+7(1.18e-05)]_27 chrIV-NC_003075:2333685- 9.00e-01 100 chrIV-NC_003075:9447406- 9.00e-01 100 chrIV-NC_003075:499163-4 2.96e-01 64_[+1(2.91e-06)]_26 chrIV-NC_003075:12352297 2.21e-01 100 chrIV-NC_003075:10381216 5.05e-01 100 chrIV-NC_003075:8444094- 7.84e-03 89_[+1(2.91e-06)]_1 chrIV-NC_003075:16696229 1.42e-01 100 chrIV-NC_003075:12043858 3.69e-01 49_[+2(9.99e-06)]_41 chrIV-NC_003075:15918178 4.52e-02 82_[+1(7.76e-05)]_8 chrIV-NC_003075:17395836 3.85e-01 72_[+3(7.68e-05)]_18 chrIV-NC_003075:14813525 6.39e-02 54_[+2(1.36e-06)]_36 chrIV-NC_003075:13854244 3.93e-04 8_[+8(3.67e-07)]_32_[+3(8.04e-05)]_40 chrIV-NC_003075:10386503 1.05e-01 27_[+2(9.06e-05)]_63 chrIV-NC_003075:630489-6 4.96e-01 100 chrIV-NC_003075:16689620 1.73e-03 6_[+5(1.93e-05)]_1_[+5(6.16e-05)]_73 chrIV-NC_003075:17398887 3.31e-03 11_[+5(4.90e-05)]_57_[+1(5.78e-05)]_12 chrIV-NC_003075:9420939- 5.34e-01 100 chrIV-NC_003075:9249999- 3.17e-03 28_[+4(3.64e-05)]_33_[+1(4.44e-05)]_19 chrIV-NC_003075:13193728 7.28e-03 35_[+2(7.71e-05)]_14_[+5(7.61e-05)]_18_[+4(3.92e-05)]_3 chrIV-NC_003075:17397905 2.27e-02 4_[+4(2.98e-05)]_10_[+4(4.33e-05)]_66 chrIV-NC_003075:12084490 6.72e-01 100 chrIV-NC_003075:13016297 1.48e-02 32_[+10(7.36e-07)]_59 chrIV-NC_003075:15317369 9.47e-01 100 chrIV-NC_003075:17322266 1.46e-04 41_[+5(3.95e-05)]_26_[+1(1.30e-05)]_1_[+3(5.46e-06)]_2 chrIV-NC_003075:14815782 1.99e-01 100 chrIV-NC_003075:18465895 3.88e-01 100 chrIV-NC_003075:17782550 1.66e-02 86_[+7(9.98e-05)]_4 chrIV-NC_003075:12357384 4.74e-01 100 chrIV-NC_003075:7868922- 4.28e-02 100 chrIV-NC_003075:8445000- 6.63e-01 100 chrIV-NC_003075:18318568 9.13e-02 100 chrIV-NC_003075:10382476 1.62e-01 21_[+5(7.61e-05)]_69 chrIV-NC_003075:17150895 2.65e-01 100 chrIV-NC_003075:11995811 6.44e-01 100 chrIV-NC_003075:17006713 3.53e-02 12_[+3(1.14e-05)]_39_[+3(1.06e-06)]_29 chrIV-NC_003075:14902719 3.79e-01 100 chrIV-NC_003075:13987300 4.32e-01 100 chrIV-NC_003075:9319710- 5.91e-05 44_[+3(4.57e-06)]_15_[+1(2.91e-06)]_21 chrIV-NC_003075:13013959 3.35e-05 42_[+1(2.60e-05)]_15_[+10(7.36e-07)]_24 chrIV-NC_003075:14325507 7.10e-01 100 chrIV-NC_003075:17728041 6.47e-01 100 chrIV-NC_003075:17432064 2.59e-01 13_[+1(3.68e-05)]_77 chrIV-NC_003075:13686062 1.70e-03 1_[+7(3.57e-06)]_40_[+8(1.37e-05)]_39 chrIV-NC_003075:14912987 1.68e-01 17_[+1(3.68e-05)]_73 chrIV-NC_003075:9257712- 7.43e-02 100 chrIV-NC_003075:14372870 6.04e-01 100 chrIV-NC_003075:17408906 9.79e-01 100 chrIV-NC_003075:17780864 5.19e-02 4_[+4(6.83e-07)]_[+4(1.37e-06)]_2_[+4(1.26e-05)]_10_[+4(3.35e-05)]_44 chrIV-NC_003075:15397206 7.09e-02 100 chrIV-NC_003075:13381861 6.74e-02 74_[+1(3.68e-05)]_16 chrIV-NC_003075:11865397 1.87e-01 100 chrIV-NC_003075:8435496- 2.50e-02 2_[+2(2.31e-05)]_88 chrIV-NC_003075:16154659 9.60e-02 7_[+1(7.76e-05)]_39_[+3(9.67e-06)]_34 chrIV-NC_003075:16271041 5.40e-01 100 chrIV-NC_003075:11604849 7.88e-02 38_[+2(3.09e-05)]_24_[+5(7.61e-05)]_18 chrIV-NC_003075:15205290 5.39e-02 46_[+2(7.28e-06)]_44 chrIV-NC_003075:5155510- 5.17e-02 65_[+5(3.95e-05)]_[+5(7.61e-05)]_15 chrIV-NC_003075:17730683 2.05e-01 100 chrIV-NC_003075:17319872 1.20e-01 23_[+3(9.42e-05)]_67 chrIV-NC_003075:15054453 1.20e-01 14_[+5(7.61e-05)]_32_[+5(4.90e-05)]_34 chrIV-NC_003075:12027927 1.19e-01 100 chrV-NC_003076:23391690- 9.35e-01 100 chrV-NC_003076:1894217-1 1.59e-02 61_[+1(2.60e-05)]_29 chrV-NC_003076:21763572- 1.74e-04 76_[+2(3.09e-05)]_4_[+7(6.87e-06)] chrV-NC_003076:26851845- 2.02e-01 100 chrV-NC_003076:26723094- 7.91e-02 80_[+3(5.21e-05)]_10 chrV-NC_003076:17639043- 3.30e-01 100 chrV-NC_003076:21793629- 1.22e-02 64_[+4(9.03e-05)]_26 chrV-NC_003076:2839208-2 6.88e-01 100 chrV-NC_003076:6828965-6 4.50e-01 100 chrV-NC_003076:536544-53 2.80e-01 100 chrV-NC_003076:23700558- 5.49e-02 39_[+1(5.94e-06)]_51 chrV-NC_003076:24509487- 6.05e-01 100 chrV-NC_003076:566586-56 1.09e-01 65_[+4(4.86e-05)]_25 chrV-NC_003076:8543303-8 9.90e-01 100 chrV-NC_003076:20898801- 8.06e-03 5_[+4(7.30e-06)]_35_[+2(6.41e-05)]_40 chrV-NC_003076:19899324- 9.47e-01 100 chrV-NC_003076:7695385-7 5.90e-02 45_[+6(6.93e-07)]_45 chrV-NC_003076:3396241-3 7.33e-03 23_[+7(3.95e-07)]_67 chrV-NC_003076:1750908-1 7.24e-02 75_[+3(9.67e-06)]_15 chrV-NC_003076:1855815-1 5.59e-02 48_[+3(2.77e-06)]_42 chrV-NC_003076:17073608- 3.54e-04 44_[+2(1.36e-06)]_46 chrV-NC_003076:24505443- 2.34e-02 5_[+7(4.85e-05)]_85 chrV-NC_003076:3550220-3 3.10e-01 100 chrV-NC_003076:2533030-2 4.79e-02 100 chrV-NC_003076:24996114- 3.88e-01 82_[+1(1.51e-05)]_8 chrV-NC_003076:3771448-3 7.71e-02 100 chrV-NC_003076:4221058-4 9.31e-02 89_[+2(3.59e-05)]_1 chrV-NC_003076:17363447- 1.41e-04 33_[+4(6.83e-07)]_1_[+5(4.90e-05)]_14_[+2(9.83e-05)]_22 chrV-NC_003076:4255028-4 2.19e-03 100 chrV-NC_003076:8004910-8 2.69e-01 100 chrV-NC_003076:2840361-2 7.11e-01 100 chrV-NC_003076:3478453-3 2.58e-02 65_[+1(2.91e-06)]_25 chrV-NC_003076:24510324- 2.81e-03 46_[+1(1.93e-05)]_44 chrV-NC_003076:23670284- 1.94e-02 61_[+3(2.62e-05)]_29 chrV-NC_003076:3515115-3 6.32e-05 72_[+4(3.21e-06)]_18 chrV-NC_003076:3181982-3 5.23e-01 100 chrV-NC_003076:2985565-2 3.01e-01 100 chrV-NC_003076:22997202- 1.39e-03 33_[+3(2.62e-05)]_41_[+1(6.61e-07)]_6 chrV-NC_003076:1279542-1 1.21e-01 14_[+5(3.95e-05)]_76 chrV-NC_003076:10455505- 2.21e-04 42_[+3(4.57e-06)]_4_[+4(8.46e-06)]_34 chrV-NC_003076:4984734-4 1.61e-01 100 chrV-NC_003076:25505659- 9.24e-01 100 chrV-NC_003076:7256699-7 6.97e-02 100 chrV-NC_003076:24993882- 2.94e-01 100 chrV-NC_003076:24507183- 1.75e-01 100 chrV-NC_003076:25086917- 5.84e-01 100 chrV-NC_003076:24843037- 3.27e-04 22_[+7(4.02e-05)]_5_[+3(7.68e-05)]_53 chrV-NC_003076:26562589- 1.65e-01 44_[+3(1.14e-05)]_46 chrV-NC_003076:3511361-3 9.85e-01 100 chrV-NC_003076:15711909- 7.23e-02 79_[+2(1.40e-05)]_11 chrV-NC_003076:10649957- 1.25e-04 [+1(1.30e-05)]_75_[+7(1.02e-05)]_5 chrV-NC_003076:26659025- 9.09e-01 100 chrV-NC_003076:26138594- 1.18e-04 16_[+1(2.91e-06)]_[+1(2.60e-05)]_32_[+4(6.83e-07)]_22 chrV-NC_003076:1826857-1 4.25e-02 41_[+2(9.99e-06)]_49 chrV-NC_003076:18000368- 8.16e-03 36_[+1(8.12e-05)]_23_[+5(1.93e-05)]_21 chrV-NC_003076:24578717- 8.82e-01 100 chrV-NC_003076:39060-391 2.18e-01 100 chrV-NC_003076:20011316- 2.96e-02 100 chrV-NC_003076:23165445- 3.10e-01 100 chrV-NC_003076:16337674- 1.75e-01 100 chrV-NC_003076:1891504-1 5.07e-01 100 chrV-NC_003076:21154885- 2.37e-01 100 chrV-NC_003076:4451032-4 7.38e-02 39_[+3(4.57e-05)]_28_[+1(6.15e-05)]_13 chrV-NC_003076:2856549-2 1.59e-01 34_[+3(3.07e-05)]_56 chrV-NC_003076:2234877-2 4.43e-03 38_[+6(4.64e-07)]_52 chrV-NC_003076:19653125- 3.11e-02 28_[+1(9.75e-06)]_62 chrV-NC_003076:13939328- 6.37e-02 100 chrV-NC_003076:3833394-3 1.64e-01 100 chrV-NC_003076:2939835-2 7.30e-02 100 chrV-NC_003076:2284163-2 3.40e-04 51_[+2(7.28e-06)]_39 chrV-NC_003076:26042706- 2.02e-03 6_[+2(3.59e-05)]_11_[+3(6.82e-06)]_63 chrV-NC_003076:16563593- 7.94e-04 46_[+2(3.32e-06)]_2_[+5(3.95e-05)]_16_[+1(9.24e-05)]_6 chrV-NC_003076:17550113- 1.16e-03 27_[+6(1.09e-06)]_63 chrV-NC_003076:7174965-7 4.93e-01 100 chrV-NC_003076:6381170-6 1.46e-01 48_[+1(8.12e-05)]_42 chrV-NC_003076:23661495- 2.09e-01 27_[+5(4.90e-05)]_63 chrV-NC_003076:7697587-7 8.24e-01 100 chrV-NC_003076:6320620-6 4.44e-02 75_[+5(3.95e-05)]_15 chrV-NC_003076:9629118-9 1.91e-01 100 chrV-NC_003076:3865681-3 5.78e-03 18_[+5(3.16e-06)]_72 chrV-NC_003076:26533069- 2.75e-02 100 chrV-NC_003076:25504492- 2.85e-01 47_[+3(4.57e-05)]_43 chrV-NC_003076:9799161-9 1.97e-01 100 chrV-NC_003076:13936253- 6.02e-01 100 chrV-NC_003076:22388451- 3.45e-04 5_[+2(4.88e-06)]_45_[+3(6.59e-05)]_30 chrV-NC_003076:2123676-2 9.12e-04 61_[+4(6.83e-07)]_29 chrV-NC_003076:3508558-3 7.85e-02 76_[+7(1.02e-05)]_14 chrV-NC_003076:21045187- 1.59e-01 35_[+3(5.21e-05)]_55 chrV-NC_003076:18947037- 2.66e-02 100 chrV-NC_003076:3242335-3 5.69e-02 26_[+4(5.22e-05)]_64 chrV-NC_003076:25908024- 3.21e-01 100 chrV-NC_003076:17585178- 5.56e-02 100 chrV-NC_003076:26253392- 7.12e-03 49_[+3(4.57e-05)]_41 chrV-NC_003076:2841184-2 4.27e-01 100 chrV-NC_003076:21855079- 1.83e-01 35_[+3(3.07e-05)]_55 chrV-NC_003076:229782-22 5.20e-02 84_[+1(5.94e-06)]_6 chrV-NC_003076:26837938- 1.48e-02 27_[+5(3.95e-05)]_5_[+1(2.91e-06)]_14_[+1(6.61e-07)]_24 chrV-NC_003076:9133297-9 1.87e-06 36_[+7(1.02e-06)]_29_[+2(5.96e-06)]_15 chrV-NC_003076:23785222- 4.29e-03 62_[+2(7.71e-05)]_28 chrV-NC_003076:966118-96 4.17e-01 100 chrV-NC_003076:15871704- 2.37e-01 7_[+5(3.95e-05)]_83 chrV-NC_003076:19273677- 2.12e-01 24_[+3(2.62e-05)]_66 chrV-NC_003076:23132831- 7.50e-01 100 chrV-NC_003076:13937852- 4.41e-01 100 chrV-NC_003076:26805576- 7.11e-02 67_[+1(2.91e-06)]_23 chrV-NC_003076:3613569-3 9.37e-04 18_[+4(6.83e-07)]_15_[+5(3.16e-06)]_37_[+4(7.24e-05)] chrV-NC_003076:5863206-5 3.26e-04 57_[+8(1.36e-07)]_33 chrV-NC_003076:26765562- 3.30e-01 72_[+1(5.78e-05)]_18 chrV-NC_003076:26211334- 1.56e-01 45_[+8(4.55e-05)]_45 chrV-NC_003076:26806816- 5.07e-01 100 chrV-NC_003076:5227509-5 2.56e-05 54_[+10(2.66e-05)]_3_[+6(2.31e-07)]_24 chrV-NC_003076:9480415-9 1.42e-05 41_[+2(6.78e-07)]_26_[+10(2.66e-05)]_14 chrV-NC_003076:8903405-8 8.13e-03 42_[+3(2.11e-06)]_48 chrV-NC_003076:21669324- 5.32e-01 100 chrV-NC_003076:7265888-7 8.90e-03 19_[+1(4.44e-05)]_71 chrV-NC_003076:23147444- 5.99e-03 8_[+3(2.20e-05)]_14_[+1(1.30e-05)]_58 chrV-NC_003076:23218219- 4.29e-03 13_[+5(5.08e-05)]_43_[+5(1.93e-05)]_5_[+4(3.35e-05)]_9 chrV-NC_003076:1395582-1 2.88e-01 100 chrV-NC_003076:2409273-2 6.60e-01 100 chrV-NC_003076:5616706-5 1.19e-01 100 chrV-NC_003076:2937206-2 7.11e-01 100 chrV-NC_003076:6409336-6 3.31e-01 100 chrV-NC_003076:3318115-3 4.13e-01 100 chrV-NC_003076:3048856-3 2.71e-01 39_[+2(3.32e-06)]_51 chrV-NC_003076:3864674-3 6.02e-06 45_[+2(5.96e-06)]_3_[+4(1.07e-05)]_32 chrV-NC_003076:22779192- 1.69e-01 90_[+1(9.24e-05)] chrV-NC_003076:26641454- 7.27e-01 100 chrV-NC_003076:25307566- 2.21e-01 100 chrV-NC_003076:792888-79 6.12e-06 45_[+2(7.28e-06)]_45 chrV-NC_003076:24994780- 7.34e-01 100 chrV-NC_003076:206021-20 1.56e-01 10_[+2(7.71e-05)]_80 chrV-NC_003076:24415567- 2.66e-01 31_[+2(4.88e-06)]_59 chrV-NC_003076:19111986- 4.39e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************