******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= 12-organelles-nucleus-merged-APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586.36mers.macs2.0.9_peaks.top500.fasta ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII-NC_003074:7211454 1.0000 100 chrIII-NC_003074:2058573 1.0000 100 chrIII-NC_003074:1315526 1.0000 100 chrIII-NC_003074:1797331 1.0000 100 chrIII-NC_003074:2114486 1.0000 100 chrIII-NC_003074:5121329 1.0000 100 chrIII-NC_003074:2012117 1.0000 100 chrIII-NC_003074:4121915 1.0000 100 chrIII-NC_003074:4608315 1.0000 100 chrIII-NC_003074:467796- 1.0000 100 chrIII-NC_003074:1880581 1.0000 100 chrIII-NC_003074:1803821 1.0000 100 chrIII-NC_003074:2232386 1.0000 100 chrIII-NC_003074:2328830 1.0000 100 chrIII-NC_003074:2342278 1.0000 100 chrIII-NC_003074:4829243 1.0000 100 chrIII-NC_003074:2274117 1.0000 100 chrIII-NC_003074:1866001 1.0000 100 chrIII-NC_003074:2345893 1.0000 100 chrIII-NC_003074:2293953 1.0000 100 chrIII-NC_003074:1960453 1.0000 100 chrIII-NC_003074:3098089 1.0000 100 chrIII-NC_003074:1631851 1.0000 100 chrIII-NC_003074:5920277 1.0000 100 chrIII-NC_003074:1216748 1.0000 100 chrIII-NC_003074:5109714 1.0000 100 chrIII-NC_003074:2114160 1.0000 100 chrIII-NC_003074:1847014 1.0000 100 chrIII-NC_003074:1880987 1.0000 100 chrIII-NC_003074:6515628 1.0000 100 chrIII-NC_003074:1912119 1.0000 100 chrIII-NC_003074:3366520 1.0000 100 chrIII-NC_003074:2267038 1.0000 100 chrIII-NC_003074:8244858 1.0000 100 chrIII-NC_003074:2123356 1.0000 100 chrIII-NC_003074:5247202 1.0000 100 chrIII-NC_003074:2058747 1.0000 100 chrIII-NC_003074:2879146 1.0000 100 chrIII-NC_003074:9812854 1.0000 100 chrIII-NC_003074:2336097 1.0000 100 chrIII-NC_003074:7507439 1.0000 100 chrIII-NC_003074:5047285 1.0000 100 chrIII-NC_003074:2048548 1.0000 100 chrIII-NC_003074:1016306 1.0000 100 chrIII-NC_003074:2148925 1.0000 100 chrIII-NC_003074:5483214 1.0000 100 chrIII-NC_003074:2137198 1.0000 100 chrIII-NC_003074:2232813 1.0000 100 chrIII-NC_003074:6158039 1.0000 100 chrIII-NC_003074:2073934 1.0000 100 chrIII-NC_003074:5639174 1.0000 100 chrIII-NC_003074:2274058 1.0000 100 chrIII-NC_003074:4161788 1.0000 100 chrIII-NC_003074:2314802 1.0000 100 chrIII-NC_003074:8325713 1.0000 100 chrIII-NC_003074:2058364 1.0000 100 chrIII-NC_003074:2263424 1.0000 100 chrIII-NC_003074:2315534 1.0000 100 chrIII-NC_003074:9969381 1.0000 100 chrIII-NC_003074:2173210 1.0000 100 chrIII-NC_003074:2295427 1.0000 100 chrIII-NC_003074:8238773 1.0000 100 chrIII-NC_003074:2006941 1.0000 100 chrIII-NC_003074:1916825 1.0000 100 chrIII-NC_003074:1824618 1.0000 100 chrIII-NC_003074:4606069 1.0000 100 chrIII-NC_003074:4388456 1.0000 100 chrIII-NC_003074:5222127 1.0000 100 chrIII-NC_003074:6780440 1.0000 100 chrIII-NC_003074:9959827 1.0000 100 chrIII-NC_003074:5293159 1.0000 100 chrIII-NC_003074:2155955 1.0000 100 chrIII-NC_003074:1373643 1.0000 100 chrIII-NC_003074:4402880 1.0000 100 chrIII-NC_003074:1136463 1.0000 100 chrIII-NC_003074:5236784 1.0000 100 chrIII-NC_003074:5561291 1.0000 100 chrIII-NC_003074:4140590 1.0000 100 chrIII-NC_003074:4732994 1.0000 100 chrII-NC_003071:383323-3 1.0000 100 chrII-NC_003071:507621-5 1.0000 100 chrII-NC_003071:893513-8 1.0000 100 chrII-NC_003071:519691-5 1.0000 100 chrII-NC_003071:14224178 1.0000 100 chrII-NC_003071:17819849 1.0000 100 chrII-NC_003071:9580218- 1.0000 100 chrII-NC_003071:13276540 1.0000 100 chrII-NC_003071:18690235 1.0000 100 chrII-NC_003071:999352-9 1.0000 100 chrII-NC_003071:15206954 1.0000 100 chrII-NC_003071:17752015 1.0000 100 chrII-NC_003071:14735573 1.0000 100 chrII-NC_003071:11771581 1.0000 100 chrII-NC_003071:18811685 1.0000 100 chrII-NC_003071:16504450 1.0000 100 chrII-NC_003071:18609160 1.0000 100 chrII-NC_003071:14733330 1.0000 100 chrII-NC_003071:17791525 1.0000 100 chrII-NC_003071:18372646 1.0000 100 chrII-NC_003071:9577588- 1.0000 100 chrII-NC_003071:18636884 1.0000 100 chrII-NC_003071:19050821 1.0000 100 chrII-NC_003071:18414199 1.0000 100 chrII-NC_003071:14485986 1.0000 100 chrII-NC_003071:14209326 1.0000 100 chrII-NC_003071:16127680 1.0000 100 chrII-NC_003071:15692135 1.0000 100 chrII-NC_003071:13275324 1.0000 100 chrII-NC_003071:7940353- 1.0000 100 chrII-NC_003071:1136691- 1.0000 100 chrII-NC_003071:9523120- 1.0000 100 chrII-NC_003071:10073979 1.0000 100 chrII-NC_003071:14984517 1.0000 100 chrII-NC_003071:17620274 1.0000 100 chrII-NC_003071:17446381 1.0000 100 chrII-NC_003071:17809790 1.0000 100 chrII-NC_003071:8692383- 1.0000 100 chrII-NC_003071:9037825- 1.0000 100 chrII-NC_003071:17811225 1.0000 100 chrII-NC_003071:8057123- 1.0000 100 chrII-NC_003071:14331382 1.0000 100 chrII-NC_003071:14343662 1.0000 100 chrII-NC_003071:18423064 1.0000 100 chrII-NC_003071:15690335 1.0000 100 chrII-NC_003071:15499324 1.0000 100 chrII-NC_003071:18813108 1.0000 100 chrII-NC_003071:17743083 1.0000 100 chrII-NC_003071:18114692 1.0000 100 chrII-NC_003071:16641474 1.0000 100 chrII-NC_003071:18809186 1.0000 100 chrII-NC_003071:12941131 1.0000 100 chrII-NC_003071:15784362 1.0000 100 chrII-NC_003071:13005722 1.0000 100 chrII-NC_003071:16559057 1.0000 100 chrII-NC_003071:15624929 1.0000 100 chrII-NC_003071:14339796 1.0000 100 chrII-NC_003071:19071014 1.0000 100 chrII-NC_003071:18635636 1.0000 100 chrII-NC_003071:13006678 1.0000 100 chrII-NC_003071:15590906 1.0000 100 chrII-NC_003071:18811088 1.0000 100 chrII-NC_003071:12683085 1.0000 100 chrII-NC_003071:436660-4 1.0000 100 chrII-NC_003071:14956344 1.0000 100 chrII-NC_003071:10191605 1.0000 100 chrII-NC_003071:16506959 1.0000 100 chrII-NC_003071:16221715 1.0000 100 chrII-NC_003071:15100000 1.0000 100 chrII-NC_003071:15009644 1.0000 100 chrII-NC_003071:19299005 1.0000 100 chrII-NC_003071:15641842 1.0000 100 chrII-NC_003071:19198253 1.0000 100 chrI-NC_003070:29216817- 1.0000 100 chrI-NC_003070:8075697-8 1.0000 100 chrI-NC_003070:26952110- 1.0000 100 chrI-NC_003070:25681122- 1.0000 100 chrI-NC_003070:27224204- 1.0000 100 chrI-NC_003070:7930468-7 1.0000 100 chrI-NC_003070:27977207- 1.0000 100 chrI-NC_003070:29649886- 1.0000 100 chrI-NC_003070:6459719-6 1.0000 100 chrI-NC_003070:9270027-9 1.0000 100 chrI-NC_003070:2990781-2 1.0000 100 chrI-NC_003070:9264433-9 1.0000 100 chrI-NC_003070:4904078-4 1.0000 100 chrI-NC_003070:20187010- 1.0000 100 chrI-NC_003070:1845343-1 1.0000 100 chrI-NC_003070:27484307- 1.0000 100 chrI-NC_003070:4706342-4 1.0000 100 chrI-NC_003070:28189228- 1.0000 100 chrI-NC_003070:9577535-9 1.0000 100 chrI-NC_003070:10365147- 1.0000 100 chrI-NC_003070:4600590-4 1.0000 100 chrI-NC_003070:8298225-8 1.0000 100 chrI-NC_003070:9696469-9 1.0000 100 chrI-NC_003070:28183883- 1.0000 100 chrI-NC_003070:1713963-1 1.0000 100 chrI-NC_003070:26100213- 1.0000 100 chrI-NC_003070:20954156- 1.0000 100 chrI-NC_003070:26581166- 1.0000 100 chrI-NC_003070:25319734- 1.0000 100 chrI-NC_003070:10693165- 1.0000 100 chrI-NC_003070:8839847-8 1.0000 100 chrI-NC_003070:11621930- 1.0000 100 chrI-NC_003070:19848591- 1.0000 100 chrI-NC_003070:1400775-1 1.0000 100 chrI-NC_003070:24034324- 1.0000 100 chrI-NC_003070:20762937- 1.0000 100 chrI-NC_003070:20566081- 1.0000 100 chrI-NC_003070:4548708-4 1.0000 100 chrI-NC_003070:26516903- 1.0000 100 chrI-NC_003070:11033851- 1.0000 100 chrI-NC_003070:9848798-9 1.0000 100 chrI-NC_003070:10802081- 1.0000 100 chrI-NC_003070:28673898- 1.0000 100 chrI-NC_003070:3059248-3 1.0000 100 chrI-NC_003070:23075613- 1.0000 100 chrI-NC_003070:9990611-9 1.0000 100 chrI-NC_003070:8719400-8 1.0000 100 chrI-NC_003070:10353987- 1.0000 100 chrI-NC_003070:5086105-5 1.0000 100 chrI-NC_003070:20956673- 1.0000 100 chrI-NC_003070:6335906-6 1.0000 100 chrI-NC_003070:7142968-7 1.0000 100 chrI-NC_003070:7765843-7 1.0000 100 chrI-NC_003070:6174575-6 1.0000 100 chrI-NC_003070:17506694- 1.0000 100 chrI-NC_003070:4654775-4 1.0000 100 chrI-NC_003070:9778028-9 1.0000 100 chrI-NC_003070:25228930- 1.0000 100 chrI-NC_003070:28358363- 1.0000 100 chrI-NC_003070:27175535- 1.0000 100 chrI-NC_003070:6400332-6 1.0000 100 chrI-NC_003070:365449-36 1.0000 100 chrI-NC_003070:11067795- 1.0000 100 chrI-NC_003070:10978094- 1.0000 100 chrI-NC_003070:29744071- 1.0000 100 chrI-NC_003070:25046709- 1.0000 100 chrI-NC_003070:1469246-1 1.0000 100 chrI-NC_003070:21207023- 1.0000 100 chrI-NC_003070:9950783-9 1.0000 100 chrI-NC_003070:28461394- 1.0000 100 chrI-NC_003070:6837288-6 1.0000 100 chrI-NC_003070:4721458-4 1.0000 100 chrI-NC_003070:813123-81 1.0000 100 chrI-NC_003070:3101291-3 1.0000 100 chrI-NC_003070:4904669-4 1.0000 100 chrI-NC_003070:26011665- 1.0000 100 chrI-NC_003070:7461930-7 1.0000 100 chrI-NC_003070:20564017- 1.0000 100 chrI-NC_003070:8595048-8 1.0000 100 chrI-NC_003070:9589553-9 1.0000 100 chrI-NC_003070:2580938-2 1.0000 100 chrI-NC_003070:7663867-7 1.0000 100 chrI-NC_003070:28294287- 1.0000 100 chrI-NC_003070:8717843-8 1.0000 100 chrI-NC_003070:8976292-8 1.0000 100 chrI-NC_003070:10795050- 1.0000 100 chrI-NC_003070:26727705- 1.0000 100 chrI-NC_003070:553848-55 1.0000 100 chrI-NC_003070:28313380- 1.0000 100 chrI-NC_003070:27298012- 1.0000 100 chrI-NC_003070:7341602-7 1.0000 100 chrI-NC_003070:2120819-2 1.0000 100 chrI-NC_003070:18690429- 1.0000 100 chrI-NC_003070:13228460- 1.0000 100 chrI-NC_003070:25409323- 1.0000 100 chrI-NC_003070:26059435- 1.0000 100 chrI-NC_003070:27363797- 1.0000 100 chrI-NC_003070:983744-98 1.0000 100 chrI-NC_003070:28236998- 1.0000 100 chrI-NC_003070:9571120-9 1.0000 100 chrI-NC_003070:9307641-9 1.0000 100 chrI-NC_003070:6916711-6 1.0000 100 chrI-NC_003070:27713517- 1.0000 100 chrI-NC_003070:11630779- 1.0000 100 chrI-NC_003070:29755660- 1.0000 100 chrI-NC_003070:431263-43 1.0000 100 chrI-NC_003070:6579449-6 1.0000 100 chrI-NC_003070:2626158-2 1.0000 100 chrI-NC_003070:21192338- 1.0000 100 chrI-NC_003070:8598785-8 1.0000 100 chrI-NC_003070:17424557- 1.0000 100 chrI-NC_003070:25391314- 1.0000 100 chrI-NC_003070:27498072- 1.0000 100 chrI-NC_003070:26476516- 1.0000 100 chrI-NC_003070:25226373- 1.0000 100 chrI-NC_003070:27292918- 1.0000 100 chrI-NC_003070:23061511- 1.0000 100 chrI-NC_003070:2621715-2 1.0000 100 chrI-NC_003070:5514017-5 1.0000 100 chrI-NC_003070:6844872-6 1.0000 100 chrI-NC_003070:27596253- 1.0000 100 chrI-NC_003070:9267121-9 1.0000 100 chrI-NC_003070:8305313-8 1.0000 100 chrI-NC_003070:6683053-6 1.0000 100 chrI-NC_003070:8983912-8 1.0000 100 chrI-NC_003070:25986115- 1.0000 100 chrI-NC_003070:4230078-4 1.0000 100 chrI-NC_003070:28123009- 1.0000 100 chrI-NC_003070:4231455-4 1.0000 100 chrI-NC_003070:5851740-5 1.0000 100 chrI-NC_003070:28378932- 1.0000 100 chrI-NC_003070:1188247-1 1.0000 100 chrI-NC_003070:18360496- 1.0000 100 chrI-NC_003070:3168218-3 1.0000 100 chrI-NC_003070:28558342- 1.0000 100 chrI-NC_003070:25774540- 1.0000 100 chrI-NC_003070:20109422- 1.0000 100 chrI-NC_003070:2395072-2 1.0000 100 chrIV-NC_003075:17319854 1.0000 100 chrIV-NC_003075:9257678- 1.0000 100 chrIV-NC_003075:15919075 1.0000 100 chrIV-NC_003075:13016189 1.0000 100 chrIV-NC_003075:8435508- 1.0000 100 chrIV-NC_003075:14913036 1.0000 100 chrIV-NC_003075:17397910 1.0000 100 chrIV-NC_003075:11995727 1.0000 100 chrIV-NC_003075:16271092 1.0000 100 chrIV-NC_003075:17432048 1.0000 100 chrIV-NC_003075:14372903 1.0000 100 chrIV-NC_003075:10386496 1.0000 100 chrIV-NC_003075:12357392 1.0000 100 chrIV-NC_003075:8374385- 1.0000 100 chrIV-NC_003075:15817454 1.0000 100 chrIV-NC_003075:16980446 1.0000 100 chrIV-NC_003075:13013992 1.0000 100 chrIV-NC_003075:18465939 1.0000 100 chrIV-NC_003075:16689014 1.0000 100 chrIV-NC_003075:14902725 1.0000 100 chrIV-NC_003075:17730731 1.0000 100 chrIV-NC_003075:13854253 1.0000 100 chrIV-NC_003075:15317404 1.0000 100 chrIV-NC_003075:5157388- 1.0000 100 chrIV-NC_003075:17150919 1.0000 100 chrIV-NC_003075:15054403 1.0000 100 chrIV-NC_003075:8452707- 1.0000 100 chrIV-NC_003075:17395813 1.0000 100 chrIV-NC_003075:9319717- 1.0000 100 chrIV-NC_003075:10381187 1.0000 100 chrIV-NC_003075:15205277 1.0000 100 chrIV-NC_003075:5155452- 1.0000 100 chrIV-NC_003075:15231291 1.0000 100 chrIV-NC_003075:12027865 1.0000 100 chrIV-NC_003075:8445049- 1.0000 100 chrIV-NC_003075:17979925 1.0000 100 chrIV-NC_003075:11604857 1.0000 100 chrIV-NC_003075:12043865 1.0000 100 chrIV-NC_003075:13987314 1.0000 100 chrIV-NC_003075:8419613- 1.0000 100 chrIV-NC_003075:18055544 1.0000 100 chrIV-NC_003075:14196767 1.0000 100 chrIV-NC_003075:18318575 1.0000 100 chrIV-NC_003075:18472262 1.0000 100 chrIV-NC_003075:59143-59 1.0000 100 chrIV-NC_003075:15110755 1.0000 100 chrIV-NC_003075:11865408 1.0000 100 chrIV-NC_003075:17398893 1.0000 100 chrIV-NC_003075:14815766 1.0000 100 chrIV-NC_003075:630556-6 1.0000 100 chrIV-NC_003075:14325477 1.0000 100 chrIV-NC_003075:7868931- 1.0000 100 chrIV-NC_003075:18080307 1.0000 100 chrIV-NC_003075:17002621 1.0000 100 chrIV-NC_003075:15918159 1.0000 100 chrIV-NC_003075:13985181 1.0000 100 chrIV-NC_003075:17006711 1.0000 100 chrIV-NC_003075:17780863 1.0000 100 chrIV-NC_003075:1157171- 1.0000 100 chrIV-NC_003075:12941021 1.0000 100 chrIV-NC_003075:15397160 1.0000 100 chrIV-NC_003075:5738986- 1.0000 100 chrIV-NC_003075:14359075 1.0000 100 chrIV-NC_003075:15291520 1.0000 100 chrIV-NC_003075:14841394 1.0000 100 chrIV-NC_003075:16689638 1.0000 100 chrIV-NC_003075:14207916 1.0000 100 chrIV-NC_003075:12084455 1.0000 100 chrIV-NC_003075:17585335 1.0000 100 chrIV-NC_003075:200809-2 1.0000 100 chrIV-NC_003075:1495507- 1.0000 100 chrM:272146-272246 1.0000 100 chrV-NC_003076:25505626- 1.0000 100 chrV-NC_003076:959036-95 1.0000 100 chrV-NC_003076:3511366-3 1.0000 100 chrV-NC_003076:19899344- 1.0000 100 chrV-NC_003076:1826915-1 1.0000 100 chrV-NC_003076:2839193-2 1.0000 100 chrV-NC_003076:21045204- 1.0000 100 chrV-NC_003076:23670310- 1.0000 100 chrV-NC_003076:2937300-2 1.0000 100 chrV-NC_003076:21900890- 1.0000 100 chrV-NC_003076:26562477- 1.0000 100 chrV-NC_003076:20898876- 1.0000 100 chrV-NC_003076:19112027- 1.0000 100 chrV-NC_003076:9133324-9 1.0000 100 chrV-NC_003076:6381195-6 1.0000 100 chrV-NC_003076:2939811-2 1.0000 100 chrV-NC_003076:4221096-4 1.0000 100 chrV-NC_003076:26663110- 1.0000 100 chrV-NC_003076:19308671- 1.0000 100 chrV-NC_003076:39082-391 1.0000 100 chrV-NC_003076:23314284- 1.0000 100 chrV-NC_003076:23785207- 1.0000 100 chrV-NC_003076:26723061- 1.0000 100 chrV-NC_003076:25504498- 1.0000 100 chrV-NC_003076:1395612-1 1.0000 100 chrV-NC_003076:26645161- 1.0000 100 chrV-NC_003076:26533070- 1.0000 100 chrV-NC_003076:26899794- 1.0000 100 chrV-NC_003076:26641487- 1.0000 100 chrV-NC_003076:1855800-1 1.0000 100 chrV-NC_003076:22779197- 1.0000 100 chrV-NC_003076:4451029-4 1.0000 100 chrV-NC_003076:25982522- 1.0000 100 chrV-NC_003076:945607-94 1.0000 100 chrV-NC_003076:3045845-3 1.0000 100 chrV-NC_003076:17363432- 1.0000 100 chrV-NC_003076:2123643-2 1.0000 100 chrV-NC_003076:2409276-2 1.0000 100 chrV-NC_003076:675966-67 1.0000 100 chrV-NC_003076:20779537- 1.0000 100 chrV-NC_003076:24505426- 1.0000 100 chrV-NC_003076:24415564- 1.0000 100 chrV-NC_003076:9480412-9 1.0000 100 chrV-NC_003076:6320651-6 1.0000 100 chrV-NC_003076:312381-31 1.0000 100 chrV-NC_003076:21763609- 1.0000 100 chrV-NC_003076:25805087- 1.0000 100 chrV-NC_003076:6556395-6 1.0000 100 chrV-NC_003076:792884-79 1.0000 100 chrV-NC_003076:2856548-2 1.0000 100 chrV-NC_003076:18947043- 1.0000 100 chrV-NC_003076:26805608- 1.0000 100 chrV-NC_003076:26138524- 1.0000 100 chrV-NC_003076:5863141-5 1.0000 100 chrV-NC_003076:6828958-6 1.0000 100 chrV-NC_003076:22997200- 1.0000 100 chrV-NC_003076:3048829-3 1.0000 100 chrV-NC_003076:24578696- 1.0000 100 chrV-NC_003076:23132906- 1.0000 100 chrV-NC_003076:18000346- 1.0000 100 chrV-NC_003076:15711862- 1.0000 100 chrV-NC_003076:7697574-7 1.0000 100 chrV-NC_003076:3396232-3 1.0000 100 chrV-NC_003076:5306644-5 1.0000 100 chrV-NC_003076:1279585-1 1.0000 100 chrV-NC_003076:3771493-3 1.0000 100 chrV-NC_003076:206010-20 1.0000 100 chrV-NC_003076:24994788- 1.0000 100 chrV-NC_003076:8004870-8 1.0000 100 chrV-NC_003076:24996090- 1.0000 100 chrV-NC_003076:2284144-2 1.0000 100 chrV-NC_003076:7694936-7 1.0000 100 chrV-NC_003076:3318152-3 1.0000 100 chrV-NC_003076:17550144- 1.0000 100 chrV-NC_003076:24507182- 1.0000 100 chrV-NC_003076:23146998- 1.0000 100 chrV-NC_003076:7055346-7 1.0000 100 chrV-NC_003076:24506357- 1.0000 100 chrV-NC_003076:3864653-3 1.0000 100 chrV-NC_003076:5420138-5 1.0000 100 chrV-NC_003076:3478444-3 1.0000 100 chrV-NC_003076:26211298- 1.0000 100 chrV-NC_003076:7174990-7 1.0000 100 chrV-NC_003076:23659088- 1.0000 100 chrV-NC_003076:5866573-5 1.0000 100 chrV-NC_003076:13937850- 1.0000 100 chrV-NC_003076:1950972-1 1.0000 100 chrV-NC_003076:9629091-9 1.0000 100 chrV-NC_003076:2840358-2 1.0000 100 chrV-NC_003076:2841201-2 1.0000 100 chrV-NC_003076:26851827- 1.0000 100 chrV-NC_003076:15871702- 1.0000 100 chrV-NC_003076:4984711-4 1.0000 100 chrV-NC_003076:26149135- 1.0000 100 chrV-NC_003076:22388470- 1.0000 100 chrV-NC_003076:25086892- 1.0000 100 chrV-NC_003076:5205664-5 1.0000 100 chrV-NC_003076:23391713- 1.0000 100 chrV-NC_003076:7265876-7 1.0000 100 chrV-NC_003076:4156345-4 1.0000 100 chrV-NC_003076:25307527- 1.0000 100 chrV-NC_003076:9799116-9 1.0000 100 chrV-NC_003076:966143-96 1.0000 100 chrV-NC_003076:2291547-2 1.0000 100 chrV-NC_003076:8903397-8 1.0000 100 chrV-NC_003076:5616726-5 1.0000 100 chrV-NC_003076:26012556- 1.0000 100 chrV-NC_003076:2612869-2 1.0000 100 chrV-NC_003076:7385658-7 1.0000 100 chrV-NC_003076:3515165-3 1.0000 100 chrV-NC_003076:6399603-6 1.0000 100 chrV-NC_003076:24993918- 1.0000 100 chrV-NC_003076:5227549-5 1.0000 100 chrV-NC_003076:3181996-3 1.0000 100 chrV-NC_003076:6409328-6 1.0000 100 chrV-NC_003076:2234878-2 1.0000 100 chrV-NC_003076:26837903- 1.0000 100 chrV-NC_003076:16337677- 1.0000 100 chrV-NC_003076:26765557- 1.0000 100 chrV-NC_003076:8543262-8 1.0000 100 chrV-NC_003076:536555-53 1.0000 100 chrV-NC_003076:2532992-2 1.0000 100 chrV-NC_003076:2985552-2 1.0000 100 chrV-NC_003076:21154905- 1.0000 100 chrV-NC_003076:13936283- 1.0000 100 chrV-NC_003076:1891492-1 1.0000 100 chrV-NC_003076:6812378-6 1.0000 100 chrV-NC_003076:3508590-3 1.0000 100 chrV-NC_003076:4255043-4 1.0000 100 chrV-NC_003076:10455493- 1.0000 100 chrV-NC_003076:6225921-6 1.0000 100 chrV-NC_003076:1711541-1 1.0000 100 chrV-NC_003076:16563580- 1.0000 100 chrV-NC_003076:26286499- 1.0000 100 chrV-NC_003076:26042698- 1.0000 100 chrV-NC_003076:24878541- 1.0000 100 chrV-NC_003076:7256719-7 1.0000 100 chrV-NC_003076:1894196-1 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme 12-organelles-nucleus-merged-APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586.36mers.macs2.0.9_peaks.top500.fasta -maxw 10 -dna -nmotifs 10 -maxsize 200000 -o meme-12-organelles-nucleus-merged-APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586.36mers.macs2.0.9_peaks.top500 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 10 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 500 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50000 N= 500 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.314 C 0.184 G 0.186 T 0.316 Background letter frequencies (from dataset with add-one prior applied): A 0.314 C 0.184 G 0.186 T 0.316 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 10 sites = 129 llr = 1016 E-value = 5.6e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A a8663198a3 pos.-specific C :::::::1:2 probability G :1427911:5 matrix T :1:2:::::: bits 2.4 2.2 * 2.0 * 1.7 * * * Relative 1.5 * * * Entropy 1.2 * *** * (11.4 bits) 1.0 * ***** 0.7 *** ***** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel AAAAGGAAAG consensus GTA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:7385658-7 47 3.08e-06 GATGTTGAAG AAGAGGAAAG AAAGATGGAG chrV-NC_003076:6320651-6 45 3.08e-06 TCGAGGGCAA AAGAGGAAAG TTAGGTCCCA chrIV-NC_003075:8419613- 31 3.08e-06 AAACACTTAA AAGAGGAAAG ATCTGGCCAC chrIV-NC_003075:16980446 63 3.08e-06 TTCTTACTAT AAAAGGAAAG GAAGAATCAA chrI-NC_003070:21192338- 34 3.08e-06 GCTTTTCCTA AAAAGGAAAG AAATTAATCT chrI-NC_003070:4600590-4 90 3.08e-06 GATGTGTTTC AAAAGGAAAG C chrI-NC_003070:7930468-7 40 3.08e-06 GATTAGCCGA AAAAGGAAAG TATGAGATGC chrII-NC_003071:18423064 28 3.08e-06 ACAACCGCCC AAAAGGAAAG TAGCTATTGG chrII-NC_003071:19050821 66 3.08e-06 AGTTTGATAT AAGAGGAAAG TTTGGTAGAA chrII-NC_003071:17819849 2 3.08e-06 A AAAAGGAAAG TTTCCAAAAG chrIII-NC_003074:5047285 87 3.08e-06 TAAAGTGATA AAAAGGAAAG TCGT chrV-NC_003076:7256719-7 47 4.91e-06 GTTTTCTATT AAAGGGAAAG AAATAAAGTT chrV-NC_003076:2284144-2 75 4.91e-06 AACATTCCCA AAGGGGAAAG AAGACATGTG chrV-NC_003076:792884-79 54 4.91e-06 GGCTTTCCCA AAGGGGAAAG AGAATTTGGC chrM:272146-272246 46 4.91e-06 GGTTGGTCAA AAAGGGAAAG AAAAAGGTGA chrI-NC_003070:9778028-9 45 4.91e-06 TTTAACGTAT AAAGGGAAAG TTAGTTCAAA chrIII-NC_003074:1912119 48 4.91e-06 ATTATACTAT AAAGGGAAAG AATGGGGCCT chrV-NC_003076:3864653-3 71 8.01e-06 CCCACGCCGA AAGTGGAAAG AGAAACAGAG chrV-NC_003076:23785207- 82 8.01e-06 ATGAACCCAT AAATGGAAAG AAAACTAAA chrV-NC_003076:9133324-9 53 8.01e-06 TTCTTGCCGA AAGTGGAAAG AAAGATATGG chrIV-NC_003075:17395813 2 8.01e-06 A AAATGGAAAG TCTTTGGACC chrI-NC_003070:6459719-6 50 8.01e-06 AAGAAGACGA AAGTGGAAAG TTTGATTAGC chrII-NC_003071:14343662 67 8.01e-06 CAGAATGGCT AAATGGAAAG ATAAATAAAA chrIII-NC_003074:2012117 49 8.01e-06 GAGTTACTAA AAATGGAAAG TATTGCCTAA chrIV-NC_003075:11604857 35 1.63e-05 TTATTTACCA AAGAGGAAAA TTTGCAGTAC chrIV-NC_003075:17979925 36 1.63e-05 ATTCCAAGTA AAAAGGAAAA AAGGTAGTGT chrI-NC_003070:27363797- 34 1.63e-05 AAAAAAGTTG AAAAGGAAAA CATTTATAGG chrI-NC_003070:553848-55 59 1.63e-05 TTGGTTCCAA AAGAGGAAAC CTTTTACTTT chrI-NC_003070:7461930-7 47 1.63e-05 GATAAAACAA AAGAGGAAAA GATTGATTTG chrI-NC_003070:28183883- 59 1.63e-05 AAATGATCAA AAAAGGAAAA CGAGGGCCAC chrI-NC_003070:2990781-2 55 1.63e-05 GAACCAAAAG AAGAGGAAAC AATAAGATTG chrII-NC_003071:12683085 34 1.63e-05 TTTTTCCTCA AAGAGGAAAA GAAATTGGTT chrII-NC_003071:14735573 65 1.63e-05 AAATGAAATA AAAAGGAAAA CCAAAAACGG chrII-NC_003071:15206954 70 1.63e-05 TCGTTACCAA AAGAGGAAAA TATCTTAACC chrIII-NC_003074:1916825 85 1.63e-05 AAAAACCTAA AAAAGGAAAA AGGTAG chrV-NC_003076:18000346- 8 2.15e-05 CCAAAAG AAAAAGAAAG CAACAAGATA chrI-NC_003070:2626158-2 17 2.15e-05 AGGGTCAAAG AAGAAGAAAG GGTACAGTAG chrV-NC_003076:9480412-9 49 4.32e-05 AATTTGCCAA AAGTGGAAAC ATGTCGACCC chrV-NC_003076:23314284- 74 4.32e-05 ATAATCCCAT AAATGGAAAC TTTGAACAAT chrIV-NC_003075:16689638 11 4.32e-05 AGAGAAAAAT AAAGAGAAAG AACAGTTCAC chrIV-NC_003075:12357392 80 4.32e-05 TGTTGTGGTG AAATGGAAAC ACACAACTCA chrI-NC_003070:11630779- 28 4.32e-05 TGAAAAGAGA AAAGAGAAAG AAATTGAAAA chrI-NC_003070:26011665- 55 4.32e-05 CGATTGCCAA AAAAGGGAAG AGAGCTAATA chrI-NC_003070:17506694- 34 4.32e-05 CTTTGTACAA AAATGGAAAC AAAGGTACGA chrIII-NC_003074:1847014 81 4.32e-05 TCCTTACCTC AAATGGAAAA CCCTTACCTC chrIV-NC_003075:13854253 81 5.14e-05 TAGCAACTGC AAATAGAAAG GTCATGTAGT chrI-NC_003070:8598785-8 90 5.14e-05 TCGTTACCCA AAATAGAAAG A chrIV-NC_003075:14359075 44 6.84e-05 ATGGTGGCAT AAAAAGAAAA GTGTCTATAA chrIV-NC_003075:5155452- 81 6.84e-05 AAGAAAACAG AAGAAGAAAA GACGTTTGGT chrIV-NC_003075:10386496 39 6.84e-05 TATATTCCAA ATAAGGAAAG TATGGAACGT chrIV-NC_003075:14372903 77 6.84e-05 TAGATCAAGA AAGAAGAAAA GGGTTGGAGC chrIV-NC_003075:9257678- 26 6.84e-05 CCAAAAATAG AAAAAGAAAC TCTTTTTAAC chrI-NC_003070:4904669-4 18 6.84e-05 TTGAACAAAA AAAAAGAAAA AAGGAAGGCT chrI-NC_003070:9950783-9 11 6.84e-05 AATTTTGGAC AAAAAGAAAA ACAAAATCAG chrII-NC_003071:17791525 45 6.84e-05 CCATTTCCAC ATGAGGAAAG AGTAAAGCAG chrII-NC_003071:519691-5 75 6.84e-05 CAAAGTGAAG AAGAAGAAAA CAAAAGTAGA chrIII-NC_003074:2123356 4 6.84e-05 CAA AAGAAGAAAA CAGCCACTCA chrI-NC_003070:25226373- 73 7.62e-05 CATTCCATGT AGAAGGAAAA AATGTTAGGT chrIII-NC_003074:2314802 30 7.62e-05 GTGAAAAAAA AGAAGGAAAA GAATCAAGTG chrII-NC_003071:16504450 53 7.91e-05 ACAAAATCCT AAAGGGGAAG AGATTCCCCA chrII-NC_003071:9577588- 30 8.82e-05 GGGACTGTGT AGAAAGAAAG AAGCCTAAAA chrV-NC_003076:3771493-3 62 1.15e-04 AGATTGCTCT AAAAGGAAAT ACTACTGTGC chrV-NC_003076:21763609- 44 1.15e-04 GGTATGACCA AAGAGGAAAT GACACGTGTT chrIV-NC_003075:8452707- 43 1.15e-04 CAAAATCTAA AAAAGGAAAT GTTTTTGGAA chrI-NC_003070:23061511- 12 1.15e-04 TGATTGAAGA AAAAGGGAAC TACTTTGTTG chrI-NC_003070:18690429- 70 1.15e-04 GTGGTTCCAA AAGAGGAAAT ATAATATAAG chrII-NC_003071:15624929 67 1.15e-04 TGAAATAGGT AAGGAGAAAA CTTTGGTCAC chrII-NC_003071:9037825- 79 1.15e-04 AGTAAAACTA AAAAGGAAAT AATATAATTA chrII-NC_003071:7940353- 23 1.15e-04 TAGTAGCAAT ATAGGGAAAG TTGGTAACTT chrIII-NC_003074:1880581 77 1.15e-04 AAGTTCGAAC AAAGAGAAAC AAGACTGACA chrV-NC_003076:2612869-2 10 1.20e-04 TTTGGATCT AAGAGGACAC GTGGCAGTTG chrIV-NC_003075:15205277 10 1.20e-04 TGCTTTCGA AAAAGGACAA TAATAATAAT chrII-NC_003071:15100000 50 1.20e-04 CGTTGTTTTA AAGAGGACAA AAAAACATAG chrV-NC_003076:7265876-7 18 1.45e-04 TGGCAAAAAA AAATAGAAAA TGTCTTTTCT chrV-NC_003076:15871702- 66 1.45e-04 CAATGGTATA AAGAAGGAAG TGTGTACTTG chrIV-NC_003075:17585335 78 1.45e-04 TATTCTTAAA AAGTAGAAAC AATTCTGACT chrIV-NC_003075:15918159 11 1.45e-04 CAAATCAGAA AGAGGGAAAA AAGTAAAGAA chrIV-NC_003075:17398893 7 1.45e-04 GATGGA AGAGGGAAAA AGTGGACCCC chrIV-NC_003075:17150919 5 1.45e-04 CTTG AAATAGAAAC ACTCTATCTC chrI-NC_003070:8976292-8 23 1.45e-04 GCTCGATAGA ATATGGAAAG GAAGGAATCC chrIII-NC_003074:5293159 8 1.45e-04 TAAGAAG AAGAAGGAAG CTATTGTTAT chrIII-NC_003074:1960453 47 1.45e-04 TTCATGCTAT ATGTGGAAAG TAAAAAGAAT chrV-NC_003076:5227549-5 5 1.57e-04 GTAT ATAAGGAAAC ACCACGTGGA chrI-NC_003070:2120819-2 64 1.73e-04 CTATTTTTAA AGATGGAAAC GGCAAAAAGT chrI-NC_003070:27175535- 57 1.73e-04 GATCGGAAAT AGAGAGAAAG AGAGAGAGCG chrII-NC_003071:8692383- 59 1.73e-04 CCCAAATGGC AAAAGAAAAG TTCCTTACCT chrV-NC_003076:1279585-1 59 1.82e-04 AACTGTCCCA ATAAAGAAAG ACGAAATTAC chrI-NC_003070:29755660- 59 1.82e-04 GCAAGACCTG ATAAAGAAAG TGTGAAGTGA chrIII-NC_003074:2058364 60 1.82e-04 GGTTTGCCAA ATGAAGAAAG CTAATAAGAA chrIV-NC_003075:17780863 3 1.99e-04 AG AAAGAGAGAG AGAGAGAGAC chrI-NC_003070:983744-98 54 1.99e-04 TTAGGGAATG AAATGGAGAA AATTGAAAAA chrI-NC_003070:19848591- 14 1.99e-04 ATCTGACAAG AGATAGAAAG AAATAGAGAG chrV-NC_003076:7055346-7 40 2.12e-04 GTTTTAGGAA AATAGGAAAG TTCTGAATAG chrIV-NC_003075:14841394 29 2.12e-04 AAAAAGGGTA AAAGGGACAA TTAAATGAGG chrI-NC_003070:25228930- 43 2.12e-04 AAGACAAGCT AATAGGAAAG TGGTTCGATG chrI-NC_003070:3059248-3 57 2.12e-04 TTTAGCGGAC AGGAAGAAAA CAGAACATCT chrV-NC_003076:17363432- 44 2.28e-04 ATACAAATGG AAATAGAGAG AGAGAAAAGA chrIV-NC_003075:18318575 43 2.28e-04 AGATAACCGA AACGGGAAAG TTCTAACGAA chrI-NC_003070:10795050- 40 2.28e-04 AATGTTGACT AAGGAGGAAG AAGGCAGAAT chrII-NC_003071:15641842 47 2.28e-04 CTTTAGGGCA AAATGGGAAA AGAATCTAAA chrV-NC_003076:19308671- 52 2.51e-04 AGACCGTCAA AAGTGGACAA AACTGGGACG chrIV-NC_003075:15291520 52 2.51e-04 TGCGTGATAT ATGGGGAAAA GAGGAGGTGA chrI-NC_003070:9270027-9 20 2.51e-04 TGGTTGTGCT AAGAAGAGAC CCGACTCATT chrI-NC_003070:29649886- 14 2.51e-04 AACAAGAGAC AAAAAGAGAA TAGGTTTCTA chrII-NC_003071:12941131 73 2.51e-04 CACATTACCA AAAAGGGCAG AGAGATTGAG chrV-NC_003076:5205664-5 79 3.02e-04 TCACATAAAG AAGGGGTAAG GCTATTTTAG chrV-NC_003076:26533070- 5 3.02e-04 TGAT AGGAGGAGAC TAGAAGGAAG chrI-NC_003070:11067795- 25 3.02e-04 ATTGTTACAA ATATGGAAAC CTAATACGAA chrI-NC_003070:1845343-1 50 3.02e-04 GACTTGACTA AACAGGAAAA GAAGTATCAT chrII-NC_003071:15009644 37 3.02e-04 GCGTGAAAAG AAGAAGGAAC GTACAAAAGT chrIII-NC_003074:2058573 81 3.02e-04 ATAAAAAATT AAAAAGAAAT AAAAAGGTCC chrIII-NC_003074:2342278 20 3.19e-04 AGCCACGTGA AGGTGGGAAG AACGCACCAA chrV-NC_003076:25086892- 57 3.58e-04 CCTTCTCCGG ATATAGAAAG CGAGGATCTA chrV-NC_003076:26562477- 74 3.58e-04 CGTAAAGTCC AAAAGAAAAA AATCAAACGA chrI-NC_003070:20564017- 2 3.58e-04 G AAAAGAAAAA AGAAGAATGA chrIII-NC_003074:2073934 76 3.58e-04 TGACAATGAC AAAAGAAAAC TTTAAATAGA chrIII-NC_003074:3098089 12 3.58e-04 TCAAAGGAAG AGAAAGAGAG TAATATACAG chrIII-NC_003074:2328830 23 3.58e-04 TTAATTAAGC AAAAGAAAAC AACACAACCC chrIV-NC_003075:14815766 74 3.85e-04 ATATCACCTG AAGAGGTAAA AATGATCTAA chrI-NC_003070:27713517- 47 3.85e-04 AAAACACCAA AAGAGGTAAA TCTCTTACAT chrII-NC_003071:17811225 39 3.85e-04 TGTGAGTCTG AAGAGGTAAA TTCAGAACCT chrII-NC_003071:15692135 29 4.19e-04 TGAGAAGGGC AAAGAGAGAC ATAGGTTCAA chrIII-NC_003074:3366520 42 4.31e-04 CCGCCGCTAA AGGAAGACAG AGACAATACC chrV-NC_003076:206010-20 90 4.66e-04 TACCGTATGG AAATAGAGAC A chrI-NC_003070:11033851- 45 4.66e-04 GAGTTACTGC AAATAGAGAA TATTATTACC chrIII-NC_003074:2345893 27 4.66e-04 TGGATAAAAG AGAAGAAAAG ACAAAAGAAT chrIV-NC_003075:7868931- 10 4.88e-04 GTTCACGTG AAGAGGGCAA TGTTTCTGAT chrI-NC_003070:26727705- 32 5.31e-04 TAGAATGGTA AAGAGAAGAG AGTGCTTTCG chrIII-NC_003074:7211454 58 5.31e-04 GCAGACAATG AGAGAGAGAG AGATAGTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:7385658-7 3.1e-06 46_[+1]_44 chrV-NC_003076:6320651-6 3.1e-06 44_[+1]_46 chrIV-NC_003075:8419613- 3.1e-06 30_[+1]_60 chrIV-NC_003075:16980446 3.1e-06 62_[+1]_28 chrI-NC_003070:21192338- 3.1e-06 33_[+1]_57 chrI-NC_003070:4600590-4 3.1e-06 89_[+1]_1 chrI-NC_003070:7930468-7 3.1e-06 39_[+1]_51 chrII-NC_003071:18423064 3.1e-06 27_[+1]_63 chrII-NC_003071:19050821 3.1e-06 65_[+1]_25 chrII-NC_003071:17819849 3.1e-06 1_[+1]_89 chrIII-NC_003074:5047285 3.1e-06 86_[+1]_4 chrV-NC_003076:7256719-7 4.9e-06 46_[+1]_44 chrV-NC_003076:2284144-2 4.9e-06 74_[+1]_16 chrV-NC_003076:792884-79 4.9e-06 53_[+1]_37 chrM:272146-272246 4.9e-06 45_[+1]_45 chrI-NC_003070:9778028-9 4.9e-06 44_[+1]_46 chrIII-NC_003074:1912119 4.9e-06 47_[+1]_43 chrV-NC_003076:3864653-3 8e-06 70_[+1]_20 chrV-NC_003076:23785207- 8e-06 81_[+1]_9 chrV-NC_003076:9133324-9 8e-06 52_[+1]_38 chrIV-NC_003075:17395813 8e-06 1_[+1]_89 chrI-NC_003070:6459719-6 8e-06 49_[+1]_41 chrII-NC_003071:14343662 8e-06 66_[+1]_24 chrIII-NC_003074:2012117 8e-06 48_[+1]_42 chrIV-NC_003075:11604857 1.6e-05 34_[+1]_56 chrIV-NC_003075:17979925 1.6e-05 35_[+1]_55 chrI-NC_003070:27363797- 1.6e-05 33_[+1]_57 chrI-NC_003070:553848-55 1.6e-05 58_[+1]_32 chrI-NC_003070:7461930-7 1.6e-05 46_[+1]_44 chrI-NC_003070:28183883- 1.6e-05 58_[+1]_32 chrI-NC_003070:2990781-2 1.6e-05 54_[+1]_36 chrII-NC_003071:12683085 1.6e-05 33_[+1]_57 chrII-NC_003071:14735573 1.6e-05 64_[+1]_26 chrII-NC_003071:15206954 1.6e-05 69_[+1]_21 chrIII-NC_003074:1916825 1.6e-05 84_[+1]_6 chrV-NC_003076:18000346- 2.1e-05 7_[+1]_83 chrI-NC_003070:2626158-2 2.1e-05 16_[+1]_74 chrV-NC_003076:9480412-9 4.3e-05 48_[+1]_42 chrV-NC_003076:23314284- 4.3e-05 73_[+1]_17 chrIV-NC_003075:16689638 4.3e-05 10_[+1]_80 chrIV-NC_003075:12357392 4.3e-05 79_[+1]_11 chrI-NC_003070:11630779- 4.3e-05 27_[+1]_63 chrI-NC_003070:26011665- 4.3e-05 54_[+1]_36 chrI-NC_003070:17506694- 4.3e-05 33_[+1]_57 chrIII-NC_003074:1847014 4.3e-05 80_[+1]_10 chrIV-NC_003075:13854253 5.1e-05 80_[+1]_10 chrI-NC_003070:8598785-8 5.1e-05 89_[+1]_1 chrIV-NC_003075:14359075 6.8e-05 43_[+1]_47 chrIV-NC_003075:5155452- 6.8e-05 80_[+1]_10 chrIV-NC_003075:10386496 6.8e-05 38_[+1]_52 chrIV-NC_003075:14372903 6.8e-05 76_[+1]_14 chrIV-NC_003075:9257678- 6.8e-05 25_[+1]_65 chrI-NC_003070:4904669-4 6.8e-05 17_[+1]_73 chrI-NC_003070:9950783-9 6.8e-05 10_[+1]_80 chrII-NC_003071:17791525 6.8e-05 44_[+1]_46 chrII-NC_003071:519691-5 6.8e-05 74_[+1]_16 chrIII-NC_003074:2123356 6.8e-05 3_[+1]_87 chrI-NC_003070:25226373- 7.6e-05 72_[+1]_18 chrIII-NC_003074:2314802 7.6e-05 29_[+1]_61 chrII-NC_003071:16504450 7.9e-05 52_[+1]_38 chrII-NC_003071:9577588- 8.8e-05 29_[+1]_61 chrV-NC_003076:3771493-3 0.00012 61_[+1]_29 chrV-NC_003076:21763609- 0.00012 43_[+1]_47 chrIV-NC_003075:8452707- 0.00012 42_[+1]_48 chrI-NC_003070:23061511- 0.00012 11_[+1]_79 chrI-NC_003070:18690429- 0.00012 69_[+1]_21 chrII-NC_003071:15624929 0.00012 66_[+1]_24 chrII-NC_003071:9037825- 0.00012 78_[+1]_12 chrII-NC_003071:7940353- 0.00012 22_[+1]_68 chrIII-NC_003074:1880581 0.00012 76_[+1]_14 chrV-NC_003076:2612869-2 0.00012 9_[+1]_81 chrIV-NC_003075:15205277 0.00012 9_[+1]_81 chrII-NC_003071:15100000 0.00012 49_[+1]_41 chrV-NC_003076:7265876-7 0.00015 17_[+1]_73 chrV-NC_003076:15871702- 0.00015 65_[+1]_25 chrIV-NC_003075:17585335 0.00015 77_[+1]_13 chrIV-NC_003075:15918159 0.00015 10_[+1]_80 chrIV-NC_003075:17398893 0.00015 6_[+1]_84 chrIV-NC_003075:17150919 0.00015 4_[+1]_86 chrI-NC_003070:8976292-8 0.00015 22_[+1]_68 chrIII-NC_003074:5293159 0.00015 7_[+1]_83 chrIII-NC_003074:1960453 0.00015 46_[+1]_44 chrV-NC_003076:5227549-5 0.00016 4_[+1]_86 chrI-NC_003070:2120819-2 0.00017 63_[+1]_27 chrI-NC_003070:27175535- 0.00017 56_[+1]_34 chrII-NC_003071:8692383- 0.00017 58_[+1]_32 chrV-NC_003076:1279585-1 0.00018 58_[+1]_32 chrI-NC_003070:29755660- 0.00018 58_[+1]_32 chrIII-NC_003074:2058364 0.00018 59_[+1]_31 chrIV-NC_003075:17780863 0.0002 2_[+1]_88 chrI-NC_003070:983744-98 0.0002 53_[+1]_37 chrI-NC_003070:19848591- 0.0002 13_[+1]_77 chrV-NC_003076:7055346-7 0.00021 39_[+1]_51 chrIV-NC_003075:14841394 0.00021 28_[+1]_62 chrI-NC_003070:25228930- 0.00021 42_[+1]_48 chrI-NC_003070:3059248-3 0.00021 56_[+1]_34 chrV-NC_003076:17363432- 0.00023 43_[+1]_47 chrIV-NC_003075:18318575 0.00023 42_[+1]_48 chrI-NC_003070:10795050- 0.00023 39_[+1]_51 chrII-NC_003071:15641842 0.00023 46_[+1]_44 chrV-NC_003076:19308671- 0.00025 51_[+1]_39 chrIV-NC_003075:15291520 0.00025 51_[+1]_39 chrI-NC_003070:9270027-9 0.00025 19_[+1]_71 chrI-NC_003070:29649886- 0.00025 13_[+1]_77 chrII-NC_003071:12941131 0.00025 72_[+1]_18 chrV-NC_003076:5205664-5 0.0003 78_[+1]_12 chrV-NC_003076:26533070- 0.0003 4_[+1]_86 chrI-NC_003070:11067795- 0.0003 24_[+1]_66 chrI-NC_003070:1845343-1 0.0003 49_[+1]_41 chrII-NC_003071:15009644 0.0003 36_[+1]_54 chrIII-NC_003074:2058573 0.0003 80_[+1]_10 chrIII-NC_003074:2342278 0.00032 19_[+1]_71 chrV-NC_003076:25086892- 0.00036 56_[+1]_34 chrV-NC_003076:26562477- 0.00036 73_[+1]_17 chrI-NC_003070:20564017- 0.00036 1_[+1]_89 chrIII-NC_003074:2073934 0.00036 75_[+1]_15 chrIII-NC_003074:3098089 0.00036 11_[+1]_79 chrIII-NC_003074:2328830 0.00036 22_[+1]_68 chrIV-NC_003075:14815766 0.00038 73_[+1]_17 chrI-NC_003070:27713517- 0.00038 46_[+1]_44 chrII-NC_003071:17811225 0.00038 38_[+1]_52 chrII-NC_003071:15692135 0.00042 28_[+1]_62 chrIII-NC_003074:3366520 0.00043 41_[+1]_49 chrV-NC_003076:206010-20 0.00047 89_[+1]_1 chrI-NC_003070:11033851- 0.00047 44_[+1]_46 chrIII-NC_003074:2345893 0.00047 26_[+1]_64 chrIV-NC_003075:7868931- 0.00049 9_[+1]_81 chrI-NC_003070:26727705- 0.00053 31_[+1]_59 chrIII-NC_003074:7211454 0.00053 57_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=10 seqs=129 chrV-NC_003076:7385658-7 ( 47) AAGAGGAAAG 1 chrV-NC_003076:6320651-6 ( 45) AAGAGGAAAG 1 chrIV-NC_003075:8419613- ( 31) AAGAGGAAAG 1 chrIV-NC_003075:16980446 ( 63) AAAAGGAAAG 1 chrI-NC_003070:21192338- ( 34) AAAAGGAAAG 1 chrI-NC_003070:4600590-4 ( 90) AAAAGGAAAG 1 chrI-NC_003070:7930468-7 ( 40) AAAAGGAAAG 1 chrII-NC_003071:18423064 ( 28) AAAAGGAAAG 1 chrII-NC_003071:19050821 ( 66) AAGAGGAAAG 1 chrII-NC_003071:17819849 ( 2) AAAAGGAAAG 1 chrIII-NC_003074:5047285 ( 87) AAAAGGAAAG 1 chrV-NC_003076:7256719-7 ( 47) AAAGGGAAAG 1 chrV-NC_003076:2284144-2 ( 75) AAGGGGAAAG 1 chrV-NC_003076:792884-79 ( 54) AAGGGGAAAG 1 chrM:272146-272246 ( 46) AAAGGGAAAG 1 chrI-NC_003070:9778028-9 ( 45) AAAGGGAAAG 1 chrIII-NC_003074:1912119 ( 48) AAAGGGAAAG 1 chrV-NC_003076:3864653-3 ( 71) AAGTGGAAAG 1 chrV-NC_003076:23785207- ( 82) AAATGGAAAG 1 chrV-NC_003076:9133324-9 ( 53) AAGTGGAAAG 1 chrIV-NC_003075:17395813 ( 2) AAATGGAAAG 1 chrI-NC_003070:6459719-6 ( 50) AAGTGGAAAG 1 chrII-NC_003071:14343662 ( 67) AAATGGAAAG 1 chrIII-NC_003074:2012117 ( 49) AAATGGAAAG 1 chrIV-NC_003075:11604857 ( 35) AAGAGGAAAA 1 chrIV-NC_003075:17979925 ( 36) AAAAGGAAAA 1 chrI-NC_003070:27363797- ( 34) AAAAGGAAAA 1 chrI-NC_003070:553848-55 ( 59) AAGAGGAAAC 1 chrI-NC_003070:7461930-7 ( 47) AAGAGGAAAA 1 chrI-NC_003070:28183883- ( 59) AAAAGGAAAA 1 chrI-NC_003070:2990781-2 ( 55) AAGAGGAAAC 1 chrII-NC_003071:12683085 ( 34) AAGAGGAAAA 1 chrII-NC_003071:14735573 ( 65) AAAAGGAAAA 1 chrII-NC_003071:15206954 ( 70) AAGAGGAAAA 1 chrIII-NC_003074:1916825 ( 85) AAAAGGAAAA 1 chrV-NC_003076:18000346- ( 8) AAAAAGAAAG 1 chrI-NC_003070:2626158-2 ( 17) AAGAAGAAAG 1 chrV-NC_003076:9480412-9 ( 49) AAGTGGAAAC 1 chrV-NC_003076:23314284- ( 74) AAATGGAAAC 1 chrIV-NC_003075:16689638 ( 11) AAAGAGAAAG 1 chrIV-NC_003075:12357392 ( 80) AAATGGAAAC 1 chrI-NC_003070:11630779- ( 28) AAAGAGAAAG 1 chrI-NC_003070:26011665- ( 55) AAAAGGGAAG 1 chrI-NC_003070:17506694- ( 34) AAATGGAAAC 1 chrIII-NC_003074:1847014 ( 81) AAATGGAAAA 1 chrIV-NC_003075:13854253 ( 81) AAATAGAAAG 1 chrI-NC_003070:8598785-8 ( 90) AAATAGAAAG 1 chrIV-NC_003075:14359075 ( 44) AAAAAGAAAA 1 chrIV-NC_003075:5155452- ( 81) AAGAAGAAAA 1 chrIV-NC_003075:10386496 ( 39) ATAAGGAAAG 1 chrIV-NC_003075:14372903 ( 77) AAGAAGAAAA 1 chrIV-NC_003075:9257678- ( 26) AAAAAGAAAC 1 chrI-NC_003070:4904669-4 ( 18) AAAAAGAAAA 1 chrI-NC_003070:9950783-9 ( 11) AAAAAGAAAA 1 chrII-NC_003071:17791525 ( 45) ATGAGGAAAG 1 chrII-NC_003071:519691-5 ( 75) AAGAAGAAAA 1 chrIII-NC_003074:2123356 ( 4) AAGAAGAAAA 1 chrI-NC_003070:25226373- ( 73) AGAAGGAAAA 1 chrIII-NC_003074:2314802 ( 30) AGAAGGAAAA 1 chrII-NC_003071:16504450 ( 53) AAAGGGGAAG 1 chrII-NC_003071:9577588- ( 30) AGAAAGAAAG 1 chrV-NC_003076:3771493-3 ( 62) AAAAGGAAAT 1 chrV-NC_003076:21763609- ( 44) AAGAGGAAAT 1 chrIV-NC_003075:8452707- ( 43) AAAAGGAAAT 1 chrI-NC_003070:23061511- ( 12) AAAAGGGAAC 1 chrI-NC_003070:18690429- ( 70) AAGAGGAAAT 1 chrII-NC_003071:15624929 ( 67) AAGGAGAAAA 1 chrII-NC_003071:9037825- ( 79) AAAAGGAAAT 1 chrII-NC_003071:7940353- ( 23) ATAGGGAAAG 1 chrIII-NC_003074:1880581 ( 77) AAAGAGAAAC 1 chrV-NC_003076:2612869-2 ( 10) AAGAGGACAC 1 chrIV-NC_003075:15205277 ( 10) AAAAGGACAA 1 chrII-NC_003071:15100000 ( 50) AAGAGGACAA 1 chrV-NC_003076:7265876-7 ( 18) AAATAGAAAA 1 chrV-NC_003076:15871702- ( 66) AAGAAGGAAG 1 chrIV-NC_003075:17585335 ( 78) AAGTAGAAAC 1 chrIV-NC_003075:15918159 ( 11) AGAGGGAAAA 1 chrIV-NC_003075:17398893 ( 7) AGAGGGAAAA 1 chrIV-NC_003075:17150919 ( 5) AAATAGAAAC 1 chrI-NC_003070:8976292-8 ( 23) ATATGGAAAG 1 chrIII-NC_003074:5293159 ( 8) AAGAAGGAAG 1 chrIII-NC_003074:1960453 ( 47) ATGTGGAAAG 1 chrV-NC_003076:5227549-5 ( 5) ATAAGGAAAC 1 chrI-NC_003070:2120819-2 ( 64) AGATGGAAAC 1 chrI-NC_003070:27175535- ( 57) AGAGAGAAAG 1 chrII-NC_003071:8692383- ( 59) AAAAGAAAAG 1 chrV-NC_003076:1279585-1 ( 59) ATAAAGAAAG 1 chrI-NC_003070:29755660- ( 59) ATAAAGAAAG 1 chrIII-NC_003074:2058364 ( 60) ATGAAGAAAG 1 chrIV-NC_003075:17780863 ( 3) AAAGAGAGAG 1 chrI-NC_003070:983744-98 ( 54) AAATGGAGAA 1 chrI-NC_003070:19848591- ( 14) AGATAGAAAG 1 chrV-NC_003076:7055346-7 ( 40) AATAGGAAAG 1 chrIV-NC_003075:14841394 ( 29) AAAGGGACAA 1 chrI-NC_003070:25228930- ( 43) AATAGGAAAG 1 chrI-NC_003070:3059248-3 ( 57) AGGAAGAAAA 1 chrV-NC_003076:17363432- ( 44) AAATAGAGAG 1 chrIV-NC_003075:18318575 ( 43) AACGGGAAAG 1 chrI-NC_003070:10795050- ( 40) AAGGAGGAAG 1 chrII-NC_003071:15641842 ( 47) AAATGGGAAA 1 chrV-NC_003076:19308671- ( 52) AAGTGGACAA 1 chrIV-NC_003075:15291520 ( 52) ATGGGGAAAA 1 chrI-NC_003070:9270027-9 ( 20) AAGAAGAGAC 1 chrI-NC_003070:29649886- ( 14) AAAAAGAGAA 1 chrII-NC_003071:12941131 ( 73) AAAAGGGCAG 1 chrV-NC_003076:5205664-5 ( 79) AAGGGGTAAG 1 chrV-NC_003076:26533070- ( 5) AGGAGGAGAC 1 chrI-NC_003070:11067795- ( 25) ATATGGAAAC 1 chrI-NC_003070:1845343-1 ( 50) AACAGGAAAA 1 chrII-NC_003071:15009644 ( 37) AAGAAGGAAC 1 chrIII-NC_003074:2058573 ( 81) AAAAAGAAAT 1 chrIII-NC_003074:2342278 ( 20) AGGTGGGAAG 1 chrV-NC_003076:25086892- ( 57) ATATAGAAAG 1 chrV-NC_003076:26562477- ( 74) AAAAGAAAAA 1 chrI-NC_003070:20564017- ( 2) AAAAGAAAAA 1 chrIII-NC_003074:2073934 ( 76) AAAAGAAAAC 1 chrIII-NC_003074:3098089 ( 12) AGAAAGAGAG 1 chrIII-NC_003074:2328830 ( 23) AAAAGAAAAC 1 chrIV-NC_003075:14815766 ( 74) AAGAGGTAAA 1 chrI-NC_003070:27713517- ( 47) AAGAGGTAAA 1 chrII-NC_003071:17811225 ( 39) AAGAGGTAAA 1 chrII-NC_003071:15692135 ( 29) AAAGAGAGAC 1 chrIII-NC_003074:3366520 ( 42) AGGAAGACAG 1 chrV-NC_003076:206010-20 ( 90) AAATAGAGAC 1 chrI-NC_003070:11033851- ( 45) AAATAGAGAA 1 chrIII-NC_003074:2345893 ( 27) AGAAGAAAAG 1 chrIV-NC_003075:7868931- ( 10) AAGAGGGCAA 1 chrI-NC_003070:26727705- ( 32) AAGAGAAGAG 1 chrIII-NC_003074:7211454 ( 58) AGAGAGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 9.78825 E= 5.6e-036 167 -1366 -1366 -1366 133 -1366 -68 -177 95 -357 97 -435 91 -1366 -6 -44 5 -1366 186 -1366 -253 -1366 235 -1366 149 -1366 -112 -335 143 -157 -100 -1366 167 -1366 -1366 -1366 -2 -11 135 -277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 129 E= 5.6e-036 1.000000 0.000000 0.000000 0.000000 0.790698 0.000000 0.116279 0.093023 0.604651 0.015504 0.364341 0.015504 0.589147 0.000000 0.178295 0.232558 0.325581 0.000000 0.674419 0.000000 0.054264 0.000000 0.945736 0.000000 0.883721 0.000000 0.085271 0.031008 0.844961 0.062016 0.093023 0.000000 1.000000 0.000000 0.000000 0.000000 0.310078 0.170543 0.472868 0.046512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- AA[AG][AT][GA]GAAA[GA] -------------------------------------------------------------------------------- Time 63.68 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 10 sites = 96 llr = 816 E-value = 3.2e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::61::11:: pos.-specific C a5:4::1::: probability G ::::::12a8 matrix T :545aa76:2 bits 2.4 * 2.2 * * 2.0 * * 1.7 * * * Relative 1.5 * ** ** Entropy 1.2 * ** ** (12.3 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CCATTTTTGG consensus TTC G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:20779537- 52 6.75e-07 ACTTTTGTGT CCACTTTTGG TGAATCTACT chrIV-NC_003075:17006711 64 6.75e-07 TCTTGTTGAT CCACTTTTGG TTGTTGATAT chrI-NC_003070:6916711-6 70 6.75e-07 ACACGTTATT CCACTTTTGG CTCCTTTGCT chrII-NC_003071:17620274 37 6.75e-07 TGAAAATATG CCACTTTTGG CTCCTCTACT chrV-NC_003076:8903397-8 51 2.51e-06 AAAATCATTT CCTCTTTTGG CGGGAGAATT chrIV-NC_003075:14325477 27 2.51e-06 TAAGTACTTT CCTCTTTTGG CGGGTTTAAA chrI-NC_003070:25391314- 53 2.51e-06 CCTAAATTTA CCATTTTTGG CAAGTAAAAT chrI-NC_003070:26059435- 26 2.51e-06 TTATTCTTTA CCATTTTTGG GTTTGGTCTA chrII-NC_003071:19198253 43 2.51e-06 TTTCTACTTT CCTCTTTTGG ATTCATTAAT chrIII-NC_003074:2315534 76 2.91e-06 AAACTGCATT CCACTTTGGG AACCAGGTAA chrV-NC_003076:26042698- 36 4.07e-06 TAACATGCTT CTACTTTTGG CAAAGAAAAA chrV-NC_003076:26645161- 80 5.23e-06 TGACTTTGAC CCTTTTTTGG TAATATTCGT chrI-NC_003070:4904669-4 75 5.23e-06 AGACTTTAGT CCTTTTTTGG TTTCTTGTAA chrI-NC_003070:9270027-9 71 5.23e-06 TTGCCTTCAT CCTTTTTTGG TAGTTAGTTC chrV-NC_003076:1855800-1 64 6.32e-06 ACGAAGGTTA CCATTTTGGG CTAAAAGTTA chrV-NC_003076:7265876-7 1 9.47e-06 . CTATTTTTGG CAAAAAAAAA chrI-NC_003070:7341602-7 46 9.47e-06 ACCCTGAGGT CTATTTTTGG TTGTATCAAT chrI-NC_003070:7930468-7 13 9.47e-06 ATGAGACTTT CTATTTTTGG GAGTAGAGAT chrII-NC_003071:14331382 19 9.47e-06 TGTTTCCTAT CTTCTTTTGG AAAGTCTCTC chrII-NC_003071:18811685 39 9.47e-06 GAGGCATTTG CTATTTTTGG TCCCTCGGAT chrIII-NC_003074:5561291 87 9.47e-06 GGCTAGTATT CTATTTTTGG GTTT chrIII-NC_003074:5047285 66 9.47e-06 ACACGTCTAT CTTCTTTTGG TTAAAGTGAT chrV-NC_003076:10455493- 55 1.02e-05 TCTAGCTTTT CTACTTTGGG AGATGATAGA chrIV-NC_003075:9319717- 38 1.02e-05 TTCTGGTTAG CTACTTTGGG ATTAGTTTTT chrIII-NC_003074:7507439 12 1.12e-05 TCTTTCTTTC CCTTTTTGGG TGTCATCTCT chrV-NC_003076:22997200- 36 1.39e-05 CATGACTTGT CTTTTTTTGG TTTCTTCCCA chrII-NC_003071:19299005 42 1.39e-05 CACAATTAGG CTTTTTTTGG CCAAGTTCAC chrII-NC_003071:16559057 68 1.39e-05 AACGAGATTA CCACTTTAGG AAGTGCTATT chrIII-NC_003074:4606069 68 1.39e-05 CCATTTTCTT CTTTTTTTGG TAAAAGTTTG chrIII-NC_003074:2173210 15 1.39e-05 TCGAGTCGTC CTTTTTTTGG TATCAGTAGA chrV-NC_003076:25805087- 56 1.58e-05 AGACAACGCT CTATTTTGGG TAATCAATTA chrI-NC_003070:1188247-1 34 1.58e-05 TTCTTTCTTC CTATTTTGGG TATGCAAAGT chrI-NC_003070:6174575-6 19 1.58e-05 GTGATGGTTA CTATTTTGGG CGGGCTCACA chrIII-NC_003074:1373643 42 1.80e-05 TTTCTCCCTC CCATTTCTGG TAAAAATTGT chrIII-NC_003074:1016306 41 1.80e-05 AAAGCGTGGA CCATTTCTGG ATTCCAAAGC chrIII-NC_003074:5247202 58 1.80e-05 TAATTACATT CCTCTTCTGG ATAATAAGTA chrI-NC_003070:7142968-7 39 2.07e-05 ATGTACCCTT CCACTTCGGG AATCCATTAT chrII-NC_003071:18414199 40 2.45e-05 ACTATTTTTG CCCCTTTTGG CTACTTGACT chrIII-NC_003074:9812854 17 2.45e-05 TATAAAGTAG CCAATTTTGG GAAAGATTTT chrI-NC_003070:27498072- 46 2.95e-05 CAGACCCATG CCTCTTTTGT GCCATTCCCC chrV-NC_003076:26149135- 32 4.09e-05 AACAACTTGT CTATTTCTGG TAAAGGTTTC chrI-NC_003070:27596253- 80 4.09e-05 AGGCTTAAAG CTACTTTTGT GTCTTCGTTT chrII-NC_003071:10191605 35 4.09e-05 ACAAGTCCCT CTACTTTTGT TTTCTTTCCT chrV-NC_003076:25504498- 42 4.67e-05 CTGTAAAGTT CTATTTTAGG TAACCCTACA chrII-NC_003071:18813108 63 4.67e-05 ATTATATTCA CTTCTTTAGG TGTTTTTTTT chrV-NC_003076:22388470- 42 5.20e-05 AAAGTGAATG CTAATTTTGG CACGTACCCC chrV-NC_003076:23670310- 36 5.20e-05 AAGTAAAACA CTCCTTTTGG GGAAATAAAT chrIV-NC_003075:14207916 82 5.20e-05 TTGTATTGAG CTAATTTTGG TCGGATTCA chrIII-NC_003074:8238773 46 5.20e-05 ATATCATCTT CTAATTTTGG CAGAATCTTT chrI-NC_003070:19848591- 69 5.54e-05 ACCTTTTTTC CCATTTTGGT TTCATCCTTT chrII-NC_003071:17446381 51 5.54e-05 CAATCTTTTA CCTCTTTGGT ATTGAACATT chrIII-NC_003074:2293953 47 5.54e-05 TCCTCTTCTG CCTCTTTGGT GATTCTTAGC chrIV-NC_003075:1157171- 86 6.45e-05 ACACGCTTTT CCACTTTCGG ATTTC chrI-NC_003070:25409323- 52 6.45e-05 CATATGTTTA CTATTTTTGT GTATATTCTG chrI-NC_003070:7765843-7 13 6.45e-05 ATCTCTACTT CTATTTTTGT AGTAGTTGTC chrIII-NC_003074:2263424 87 6.45e-05 ACCCCTTGAG CTTTTTCTGG CTTG chrV-NC_003076:16337677- 38 7.36e-05 TATTGTGTCT CTATTTATGG AAGTGTAAAG chrV-NC_003076:24507182- 28 7.36e-05 AAAAAGTGGC CTATTTATGG GAAGAGAATC chrV-NC_003076:5863141-5 6 7.36e-05 AGTCA CTATTTATGG TTAGAAAATA chrI-NC_003070:25228930- 69 7.36e-05 GATGAGTTTA CTTCTTCGGG AAAGTGGTGT chrIII-NC_003074:5293159 43 7.36e-05 TGAGAGATTT CTATTTCGGG AAGCTATTTC chrII-NC_003071:18811088 45 7.93e-05 TCATCCTTTA CTTATTTTGG AAAAAAGCCT chrII-NC_003071:15624929 20 7.93e-05 CAAAAATATG CTATTTGTGG GACTGTTTCA chrIII-NC_003074:2232813 54 7.93e-05 TTTTCTTTAG CTACTTAGGG AATGACGTTT chrV-NC_003076:21045204- 20 9.04e-05 GTGTATGTGC CCTTTTAGGG CAACAATTAA chrI-NC_003070:8305313-8 44 9.04e-05 ATTGACCCAT CCATTTTCGG GCCATGTTTG chrIII-NC_003074:2137198 85 9.04e-05 GTGTGTCACC CTTTTTTTGT ATGAGA chrV-NC_003076:2612869-2 67 9.82e-05 GATAACGAAA CCTTTTGGGG TATTTTTGGC chrV-NC_003076:2856548-2 36 1.05e-04 CTTTTTATTT CCCCTTTAGG GTAGCTTTAC chrIV-NC_003075:17397910 43 1.05e-04 GCAGTAGTTT CCACTTGAGG AAAGCAACAT chrIII-NC_003074:4732994 71 1.05e-04 ACTTAGTCTT CTTCTTAGGG GTATTAGCGT chrI-NC_003070:5086105-5 77 1.10e-04 TACTAGTTTG CCAGTTTTGG AGCCCCAAAC chrV-NC_003076:23659088- 52 1.17e-04 CGTGATTATT CCTCTTTAGT CTTTACTCCC chrV-NC_003076:4451029-4 43 1.17e-04 TACCTTTTTG CCACATTTGG AGGATTTTGT chrIV-NC_003075:13854253 42 1.17e-04 TTATAGCTTT CCTTTTCAGG AAAGTATTAT chrIV-NC_003075:16980446 9 1.17e-04 CACCGTAC CCATTTTAGT TTGGTATAAC chrV-NC_003076:2532992-2 10 1.26e-04 AGACCTTAG CCTATTCTGG CGTTACCTTT chrIV-NC_003075:8435508- 32 1.38e-04 TGTTTGTATA CTACTTTAGT CTAGATGGAC chrIV-NC_003075:17319854 42 1.38e-04 TTAGAGATTT CCTATTTAGG AAACGAGACG chrI-NC_003070:28461394- 3 1.38e-04 AG CCTCTTGAGG ACTTTGAGGA chrV-NC_003076:2409276-2 51 1.57e-04 AATTTACTTT CCTCTTATGT TCTCAACCAA chrV-NC_003076:2939811-2 36 1.57e-04 ACCAATCTCA CCTTTTTAGT AACTTGAATT chrIII-NC_003074:1866001 34 1.57e-04 TTGGTTTTAC CCTCTTATGT TGACACTGAA chrV-NC_003076:6409328-6 86 1.69e-04 ACACGAGGAG CCATTTGTGT GTGTG chrV-NC_003076:5205664-5 90 1.87e-04 AGGGGTAAGG CTATTTTAGT A chrV-NC_003076:4984711-4 42 1.87e-04 ATAATTTAAT CCAATTTGGT AAGAAGATTT chrII-NC_003071:15690335 89 1.87e-04 AGCTTTCTTT CTACTTATGT AC chrII-NC_003071:18609160 50 1.87e-04 TATTTTATTC CCAATTTGGT ATTCTTCTTC chrII-NC_003071:9523120- 56 2.01e-04 TCTCTTCTTC CTCCTTTTGT CATATTACTT chrV-NC_003076:3045845-3 43 2.15e-04 ACTGTTGTTG CCTTTTATGT TCGGTTTCCT chrI-NC_003070:4548708-4 58 2.49e-04 TGGATACTTT CTATATTTGG AAAGTTTGGC chrV-NC_003076:1395612-1 64 2.82e-04 AAGTAGGTTT CCACTTTGCG CTCATGCATA chrII-NC_003071:18372646 14 2.82e-04 GCATCAATCT CTATGTTTGG TTAATAAGAA chrV-NC_003076:39082-391 51 2.96e-04 TGTCAACTTT CCTTTTTTAG ATTTAAGTGT chrIII-NC_003074:1631851 47 3.12e-04 ATGTTCTTTG CCTCTTTGAG AACTGTAGGA chrI-NC_003070:8075697-8 57 4.85e-04 AGGGGGTCCT TTATTTTTGG CATTTGACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:20779537- 6.7e-07 51_[+2]_39 chrIV-NC_003075:17006711 6.7e-07 63_[+2]_27 chrI-NC_003070:6916711-6 6.7e-07 69_[+2]_21 chrII-NC_003071:17620274 6.7e-07 36_[+2]_54 chrV-NC_003076:8903397-8 2.5e-06 50_[+2]_40 chrIV-NC_003075:14325477 2.5e-06 26_[+2]_64 chrI-NC_003070:25391314- 2.5e-06 52_[+2]_38 chrI-NC_003070:26059435- 2.5e-06 25_[+2]_65 chrII-NC_003071:19198253 2.5e-06 42_[+2]_48 chrIII-NC_003074:2315534 2.9e-06 75_[+2]_15 chrV-NC_003076:26042698- 4.1e-06 35_[+2]_55 chrV-NC_003076:26645161- 5.2e-06 79_[+2]_11 chrI-NC_003070:4904669-4 5.2e-06 74_[+2]_16 chrI-NC_003070:9270027-9 5.2e-06 70_[+2]_20 chrV-NC_003076:1855800-1 6.3e-06 63_[+2]_27 chrV-NC_003076:7265876-7 9.5e-06 [+2]_90 chrI-NC_003070:7341602-7 9.5e-06 45_[+2]_45 chrI-NC_003070:7930468-7 9.5e-06 12_[+2]_78 chrII-NC_003071:14331382 9.5e-06 18_[+2]_72 chrII-NC_003071:18811685 9.5e-06 38_[+2]_52 chrIII-NC_003074:5561291 9.5e-06 86_[+2]_4 chrIII-NC_003074:5047285 9.5e-06 65_[+2]_25 chrV-NC_003076:10455493- 1e-05 54_[+2]_36 chrIV-NC_003075:9319717- 1e-05 37_[+2]_53 chrIII-NC_003074:7507439 1.1e-05 11_[+2]_79 chrV-NC_003076:22997200- 1.4e-05 35_[+2]_55 chrII-NC_003071:19299005 1.4e-05 41_[+2]_49 chrII-NC_003071:16559057 1.4e-05 67_[+2]_23 chrIII-NC_003074:4606069 1.4e-05 67_[+2]_23 chrIII-NC_003074:2173210 1.4e-05 14_[+2]_76 chrV-NC_003076:25805087- 1.6e-05 55_[+2]_35 chrI-NC_003070:1188247-1 1.6e-05 33_[+2]_57 chrI-NC_003070:6174575-6 1.6e-05 18_[+2]_72 chrIII-NC_003074:1373643 1.8e-05 41_[+2]_49 chrIII-NC_003074:1016306 1.8e-05 40_[+2]_50 chrIII-NC_003074:5247202 1.8e-05 57_[+2]_33 chrI-NC_003070:7142968-7 2.1e-05 38_[+2]_52 chrII-NC_003071:18414199 2.5e-05 39_[+2]_51 chrIII-NC_003074:9812854 2.5e-05 16_[+2]_74 chrI-NC_003070:27498072- 2.9e-05 45_[+2]_45 chrV-NC_003076:26149135- 4.1e-05 31_[+2]_59 chrI-NC_003070:27596253- 4.1e-05 79_[+2]_11 chrII-NC_003071:10191605 4.1e-05 34_[+2]_56 chrV-NC_003076:25504498- 4.7e-05 41_[+2]_49 chrII-NC_003071:18813108 4.7e-05 62_[+2]_28 chrV-NC_003076:22388470- 5.2e-05 41_[+2]_49 chrV-NC_003076:23670310- 5.2e-05 35_[+2]_55 chrIV-NC_003075:14207916 5.2e-05 81_[+2]_9 chrIII-NC_003074:8238773 5.2e-05 45_[+2]_45 chrI-NC_003070:19848591- 5.5e-05 68_[+2]_22 chrII-NC_003071:17446381 5.5e-05 50_[+2]_40 chrIII-NC_003074:2293953 5.5e-05 46_[+2]_44 chrIV-NC_003075:1157171- 6.4e-05 85_[+2]_5 chrI-NC_003070:25409323- 6.4e-05 51_[+2]_39 chrI-NC_003070:7765843-7 6.4e-05 12_[+2]_78 chrIII-NC_003074:2263424 6.4e-05 86_[+2]_4 chrV-NC_003076:16337677- 7.4e-05 37_[+2]_53 chrV-NC_003076:24507182- 7.4e-05 27_[+2]_63 chrV-NC_003076:5863141-5 7.4e-05 5_[+2]_85 chrI-NC_003070:25228930- 7.4e-05 68_[+2]_22 chrIII-NC_003074:5293159 7.4e-05 42_[+2]_48 chrII-NC_003071:18811088 7.9e-05 44_[+2]_46 chrII-NC_003071:15624929 7.9e-05 19_[+2]_71 chrIII-NC_003074:2232813 7.9e-05 53_[+2]_37 chrV-NC_003076:21045204- 9e-05 19_[+2]_71 chrI-NC_003070:8305313-8 9e-05 43_[+2]_47 chrIII-NC_003074:2137198 9e-05 84_[+2]_6 chrV-NC_003076:2612869-2 9.8e-05 66_[+2]_24 chrV-NC_003076:2856548-2 0.0001 35_[+2]_55 chrIV-NC_003075:17397910 0.0001 42_[+2]_48 chrIII-NC_003074:4732994 0.0001 70_[+2]_20 chrI-NC_003070:5086105-5 0.00011 76_[+2]_14 chrV-NC_003076:23659088- 0.00012 51_[+2]_39 chrV-NC_003076:4451029-4 0.00012 42_[+2]_48 chrIV-NC_003075:13854253 0.00012 41_[+2]_49 chrIV-NC_003075:16980446 0.00012 8_[+2]_82 chrV-NC_003076:2532992-2 0.00013 9_[+2]_81 chrIV-NC_003075:8435508- 0.00014 31_[+2]_59 chrIV-NC_003075:17319854 0.00014 41_[+2]_49 chrI-NC_003070:28461394- 0.00014 2_[+2]_88 chrV-NC_003076:2409276-2 0.00016 50_[+2]_40 chrV-NC_003076:2939811-2 0.00016 35_[+2]_55 chrIII-NC_003074:1866001 0.00016 33_[+2]_57 chrV-NC_003076:6409328-6 0.00017 85_[+2]_5 chrV-NC_003076:5205664-5 0.00019 89_[+2]_1 chrV-NC_003076:4984711-4 0.00019 41_[+2]_49 chrII-NC_003071:15690335 0.00019 88_[+2]_2 chrII-NC_003071:18609160 0.00019 49_[+2]_41 chrII-NC_003071:9523120- 0.0002 55_[+2]_35 chrV-NC_003076:3045845-3 0.00021 42_[+2]_48 chrI-NC_003070:4548708-4 0.00025 57_[+2]_33 chrV-NC_003076:1395612-1 0.00028 63_[+2]_27 chrII-NC_003071:18372646 0.00028 13_[+2]_77 chrV-NC_003076:39082-391 0.0003 50_[+2]_40 chrIII-NC_003074:1631851 0.00031 46_[+2]_44 chrI-NC_003070:8075697-8 0.00049 56_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=10 seqs=96 chrV-NC_003076:20779537- ( 52) CCACTTTTGG 1 chrIV-NC_003075:17006711 ( 64) CCACTTTTGG 1 chrI-NC_003070:6916711-6 ( 70) CCACTTTTGG 1 chrII-NC_003071:17620274 ( 37) CCACTTTTGG 1 chrV-NC_003076:8903397-8 ( 51) CCTCTTTTGG 1 chrIV-NC_003075:14325477 ( 27) CCTCTTTTGG 1 chrI-NC_003070:25391314- ( 53) CCATTTTTGG 1 chrI-NC_003070:26059435- ( 26) CCATTTTTGG 1 chrII-NC_003071:19198253 ( 43) CCTCTTTTGG 1 chrIII-NC_003074:2315534 ( 76) CCACTTTGGG 1 chrV-NC_003076:26042698- ( 36) CTACTTTTGG 1 chrV-NC_003076:26645161- ( 80) CCTTTTTTGG 1 chrI-NC_003070:4904669-4 ( 75) CCTTTTTTGG 1 chrI-NC_003070:9270027-9 ( 71) CCTTTTTTGG 1 chrV-NC_003076:1855800-1 ( 64) CCATTTTGGG 1 chrV-NC_003076:7265876-7 ( 1) CTATTTTTGG 1 chrI-NC_003070:7341602-7 ( 46) CTATTTTTGG 1 chrI-NC_003070:7930468-7 ( 13) CTATTTTTGG 1 chrII-NC_003071:14331382 ( 19) CTTCTTTTGG 1 chrII-NC_003071:18811685 ( 39) CTATTTTTGG 1 chrIII-NC_003074:5561291 ( 87) CTATTTTTGG 1 chrIII-NC_003074:5047285 ( 66) CTTCTTTTGG 1 chrV-NC_003076:10455493- ( 55) CTACTTTGGG 1 chrIV-NC_003075:9319717- ( 38) CTACTTTGGG 1 chrIII-NC_003074:7507439 ( 12) CCTTTTTGGG 1 chrV-NC_003076:22997200- ( 36) CTTTTTTTGG 1 chrII-NC_003071:19299005 ( 42) CTTTTTTTGG 1 chrII-NC_003071:16559057 ( 68) CCACTTTAGG 1 chrIII-NC_003074:4606069 ( 68) CTTTTTTTGG 1 chrIII-NC_003074:2173210 ( 15) CTTTTTTTGG 1 chrV-NC_003076:25805087- ( 56) CTATTTTGGG 1 chrI-NC_003070:1188247-1 ( 34) CTATTTTGGG 1 chrI-NC_003070:6174575-6 ( 19) CTATTTTGGG 1 chrIII-NC_003074:1373643 ( 42) CCATTTCTGG 1 chrIII-NC_003074:1016306 ( 41) CCATTTCTGG 1 chrIII-NC_003074:5247202 ( 58) CCTCTTCTGG 1 chrI-NC_003070:7142968-7 ( 39) CCACTTCGGG 1 chrII-NC_003071:18414199 ( 40) CCCCTTTTGG 1 chrIII-NC_003074:9812854 ( 17) CCAATTTTGG 1 chrI-NC_003070:27498072- ( 46) CCTCTTTTGT 1 chrV-NC_003076:26149135- ( 32) CTATTTCTGG 1 chrI-NC_003070:27596253- ( 80) CTACTTTTGT 1 chrII-NC_003071:10191605 ( 35) CTACTTTTGT 1 chrV-NC_003076:25504498- ( 42) CTATTTTAGG 1 chrII-NC_003071:18813108 ( 63) CTTCTTTAGG 1 chrV-NC_003076:22388470- ( 42) CTAATTTTGG 1 chrV-NC_003076:23670310- ( 36) CTCCTTTTGG 1 chrIV-NC_003075:14207916 ( 82) CTAATTTTGG 1 chrIII-NC_003074:8238773 ( 46) CTAATTTTGG 1 chrI-NC_003070:19848591- ( 69) CCATTTTGGT 1 chrII-NC_003071:17446381 ( 51) CCTCTTTGGT 1 chrIII-NC_003074:2293953 ( 47) CCTCTTTGGT 1 chrIV-NC_003075:1157171- ( 86) CCACTTTCGG 1 chrI-NC_003070:25409323- ( 52) CTATTTTTGT 1 chrI-NC_003070:7765843-7 ( 13) CTATTTTTGT 1 chrIII-NC_003074:2263424 ( 87) CTTTTTCTGG 1 chrV-NC_003076:16337677- ( 38) CTATTTATGG 1 chrV-NC_003076:24507182- ( 28) CTATTTATGG 1 chrV-NC_003076:5863141-5 ( 6) CTATTTATGG 1 chrI-NC_003070:25228930- ( 69) CTTCTTCGGG 1 chrIII-NC_003074:5293159 ( 43) CTATTTCGGG 1 chrII-NC_003071:18811088 ( 45) CTTATTTTGG 1 chrII-NC_003071:15624929 ( 20) CTATTTGTGG 1 chrIII-NC_003074:2232813 ( 54) CTACTTAGGG 1 chrV-NC_003076:21045204- ( 20) CCTTTTAGGG 1 chrI-NC_003070:8305313-8 ( 44) CCATTTTCGG 1 chrIII-NC_003074:2137198 ( 85) CTTTTTTTGT 1 chrV-NC_003076:2612869-2 ( 67) CCTTTTGGGG 1 chrV-NC_003076:2856548-2 ( 36) CCCCTTTAGG 1 chrIV-NC_003075:17397910 ( 43) CCACTTGAGG 1 chrIII-NC_003074:4732994 ( 71) CTTCTTAGGG 1 chrI-NC_003070:5086105-5 ( 77) CCAGTTTTGG 1 chrV-NC_003076:23659088- ( 52) CCTCTTTAGT 1 chrV-NC_003076:4451029-4 ( 43) CCACATTTGG 1 chrIV-NC_003075:13854253 ( 42) CCTTTTCAGG 1 chrIV-NC_003075:16980446 ( 9) CCATTTTAGT 1 chrV-NC_003076:2532992-2 ( 10) CCTATTCTGG 1 chrIV-NC_003075:8435508- ( 32) CTACTTTAGT 1 chrIV-NC_003075:17319854 ( 42) CCTATTTAGG 1 chrI-NC_003070:28461394- ( 3) CCTCTTGAGG 1 chrV-NC_003076:2409276-2 ( 51) CCTCTTATGT 1 chrV-NC_003076:2939811-2 ( 36) CCTTTTTAGT 1 chrIII-NC_003074:1866001 ( 34) CCTCTTATGT 1 chrV-NC_003076:6409328-6 ( 86) CCATTTGTGT 1 chrV-NC_003076:5205664-5 ( 90) CTATTTTAGT 1 chrV-NC_003076:4984711-4 ( 42) CCAATTTGGT 1 chrII-NC_003071:15690335 ( 89) CTACTTATGT 1 chrII-NC_003071:18609160 ( 50) CCAATTTGGT 1 chrII-NC_003071:9523120- ( 56) CTCCTTTTGT 1 chrV-NC_003076:3045845-3 ( 43) CCTTTTATGT 1 chrI-NC_003070:4548708-4 ( 58) CTATATTTGG 1 chrV-NC_003076:1395612-1 ( 64) CCACTTTGCG 1 chrII-NC_003071:18372646 ( 14) CTATGTTTGG 1 chrV-NC_003076:39082-391 ( 51) CCTTTTTTAG 1 chrIII-NC_003074:1631851 ( 47) CCTCTTTGAG 1 chrI-NC_003070:8075697-8 ( 57) TTATTTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 9.33384 E= 3.2e-034 -1323 243 -1323 -492 -1323 150 -1323 60 89 -214 -1323 25 -174 118 -415 60 -391 -1323 -415 161 -1323 -1323 -1323 166 -159 -82 -183 123 -121 -314 30 96 -391 -414 238 -1323 -1323 -1323 205 -47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 96 E= 3.2e-034 0.000000 0.989583 0.000000 0.010417 0.000000 0.520833 0.000000 0.479167 0.583333 0.041667 0.000000 0.375000 0.093750 0.416667 0.010417 0.479167 0.020833 0.000000 0.010417 0.968750 0.000000 0.000000 0.000000 1.000000 0.104167 0.104167 0.052083 0.739583 0.135417 0.020833 0.229167 0.614583 0.020833 0.010417 0.968750 0.000000 0.000000 0.000000 0.770833 0.229167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[CT][AT][TC]TTT[TG]G[GT] -------------------------------------------------------------------------------- Time 107.24 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 10 sites = 74 llr = 646 E-value = 5.5e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :::::::::: pos.-specific C :6:815:537 probability G :1:::::1:: matrix T a3a295a363 bits 2.4 2.2 2.0 1.7 * * Relative 1.5 * ** * * Entropy 1.2 * *** * * (12.6 bits) 1.0 ******* ** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel TCTCTTTCTC consensus T T C TCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:22997200- 88 6.65e-07 ATTGATCACC TCTCTCTCTC ATC chrIV-NC_003075:14207916 20 6.65e-07 TTTTACCCTT TCTCTCTCTC TCTTTCTCTG chrI-NC_003070:6579449-6 75 6.65e-07 TAGTTTTACC TCTCTCTCTC TTCTTTTTTC chrI-NC_003070:8717843-8 81 6.65e-07 GCACAATGCG TCTCTCTCTC TCTCTCTCTA chrII-NC_003071:436660-4 87 6.65e-07 TGACTATTTA TCTCTCTCTC TCGT chrII-NC_003071:999352-9 38 6.65e-07 TTTATCTCTT TCTCTCTCTC TCTTCTCTTT chrII-NC_003071:9580218- 9 6.65e-07 GCAAAAAT TCTCTCTCTC ACAAAATTTA chrII-NC_003071:15784362 35 1.05e-06 ATGGTCCCCT TCTCTCTCCC ATAACCCTAC chrIII-NC_003074:5121329 44 1.05e-06 TCGCTTTTAC TCTCTCTCCC ATCCTATATA chrV-NC_003076:6812378-6 2 2.19e-06 T TCTCTTTCTC CACCGTTGAG chrV-NC_003076:5616726-5 90 2.19e-06 CTATCACATC TCTCTTTCTC T chrI-NC_003070:9589553-9 84 2.19e-06 CGTTTCTGCG TCTCTTTCTC TCGTCCT chrIII-NC_003074:1373643 61 2.19e-06 GTAAAAATTG TCTCTTTCTC TCTTCTTTTC chrV-NC_003076:5866573-5 36 2.86e-06 ATTGGAGTTG TCTCTTTCCC TTGTAATCTC chrII-NC_003071:16221715 59 2.86e-06 GTACATCAAA TCTCTTTCCC TTTATAAAAC chrI-NC_003070:13228460- 13 4.66e-06 GCTTTTTTTT TCTCTCTTCC TGAAGCAAGC chrIII-NC_003074:8238773 79 5.33e-06 CTAATTCCAC TCTCTCTGTC CGAAAATTTC chrV-NC_003076:26837903- 77 8.01e-06 GTAAAAAGTA TCTCTCTCTT TCTTTCTATC chrV-NC_003076:26138524- 86 8.01e-06 CTCTCCATCA TCTCTCTCTT TTTCT chrV-NC_003076:1891492-1 79 1.13e-05 ACATTTTTGG TTTCTCTCCC AAAATTGAAC chrII-NC_003071:8057123- 31 1.13e-05 TATTCTATAC TCTCTCTCCT TTATCTTTGC chrV-NC_003076:3478444-3 78 1.24e-05 AGGTGCCCTC TCTCTTTTCC CTATCTTAAG chrV-NC_003076:26805608- 35 1.47e-05 TCCCTCTCCC TCTTTCTCTC TACGCATATA chrII-NC_003071:18635636 75 1.47e-05 CTATGGTCCG TCTCTTTGTC TTTATGTCGC chrII-NC_003071:11771581 22 1.47e-05 AGGAAATGAA TCTCTTTGTC AAGTTGATGT chrIII-NC_003074:1216748 9 2.00e-05 ATTTTTTC TTTCTTTCTC CTTTTCTACT chrV-NC_003076:26012556- 89 2.27e-05 TTCGAGGTGA TCTCTTTCCT TT chrIII-NC_003074:5222127 42 2.27e-05 CATTATGTTT TTTCTTTCCC TTTTTGCTGT chrIII-NC_003074:2232813 7 2.27e-05 ACCCAA TTTCTTTCCC AATCATTTGA chrII-NC_003071:18414199 66 2.73e-05 GACTCTTCTG TGTCTCTCTC ATCAAATCAA chrIII-NC_003074:9959827 83 3.24e-05 CATTATACCA TCTCTCTTTT TTTTTTAC chrIII-NC_003074:4388456 64 3.24e-05 CACCTCACCT TCTCTCTTTT TTTTTTCTTT chrV-NC_003076:7265876-7 35 4.43e-05 AAATGTCTTT TCTTTCTTTC ATTAAACTTT chrI-NC_003070:11630779- 91 4.43e-05 CTTTCTTTTT TCTTTCTTTC chrIII-NC_003074:2263424 33 4.43e-05 CCTCTGTTTT TTTCTCTCTT TATTTCTGCA chrIII-NC_003074:7507439 2 4.43e-05 C TCTTTCTTTC CCTTTTTGGG chrIII-NC_003074:2058747 57 4.43e-05 ACGCAACGCA TCTCTCTGCT CTCTTCGTTT chrI-NC_003070:2120819-2 90 5.40e-05 AAGTTATGGT TCTTTCTTCC A chrII-NC_003071:9523120- 40 5.40e-05 AATCACGTGT TCCCTTTCTC TTCTTCCTCC chrII-NC_003071:17819849 52 5.40e-05 AGCCCATACC TCTCTTTTTT CCTCTAAACA chrIII-NC_003074:5047285 27 5.40e-05 TATCGTCGAG TTTCTTTTTC TTTATGCTTA chrIII-NC_003074:467796- 55 5.40e-05 CTATCATCAT TTTCTTTTTC TTACTTCACA chrV-NC_003076:22779197- 89 6.01e-05 TGTAACTTTT TTTCTTTTCC TT chrIV-NC_003075:17398893 74 6.91e-05 AACATTTTCC TTTTTCTCTC ATAATTCCTT chrIII-NC_003074:5293159 59 6.91e-05 CGGGAAGCTA TTTCTTTGTC TTCTTCAATT chrV-NC_003076:1894196-1 84 8.08e-05 ACCAGAAGAC TTTCTTTCTT TTTAAGG chrV-NC_003076:10455493- 22 8.08e-05 GTGGAAGAGA TCTTTTTTTC CTTTTTATTG chrI-NC_003070:28236998- 18 8.08e-05 CACAGATCCG TCTTTCTCCT CCACACAATA chrI-NC_003070:29216817- 57 8.08e-05 TATCTGAGCT TCTTTCTCCT CTATGACCAT chrII-NC_003071:16641474 48 8.08e-05 ACGGTTGATA TCTCCCTGTC ACTATTTATC chrII-NC_003071:17743083 6 8.08e-05 TCTTT TCTTTTTTTC TTTTTTTGCG chrII-NC_003071:14331382 77 8.08e-05 TTCTTCACAC TCTCTTTGCT CTTCTTTGGT chrII-NC_003071:10191605 45 8.62e-05 CTACTTTTGT TTTCTTTCCT TTTTCGTCTA chrIII-NC_003074:5236784 42 8.62e-05 TTTAGAATCA TTTCTTTCCT AAAATAGTAA chrV-NC_003076:21900890- 89 9.13e-05 TTATTAATTA TGTCTCTTTC TA chrI-NC_003070:9270027-9 56 1.01e-04 TGGTAAACTC TCTTTTTGCC TTCATCCTTT chrIII-NC_003074:4608315 87 1.07e-04 CATCTTTGTC TGTCTCTGTC CGAA chrI-NC_003070:9264433-9 59 1.13e-04 AAACTAGACC TCTCCTTGCC TATTATTGCC chrIV-NC_003075:14902725 27 1.17e-04 ACTGCAAACA TGTCTTTTTC TGACCAACCC chrIV-NC_003075:13013992 11 1.24e-04 GAATTTCACT TTCCTCTCTC GGACCTTACA chrI-NC_003070:21192338- 55 1.39e-04 AATTAATCTG TCTTCTTCCC CAATCCCGAA chrI-NC_003070:10693165- 51 1.39e-04 CTTCCATTGG TCTCTTTCAC AGTACTTACG chrII-NC_003071:18690235 27 1.39e-04 TCTTGCTTTA TGTCTTTCTT GTTTCTGTAA chrIV-NC_003075:13016189 12 1.50e-04 TCTCTATCTA TCTTTCTTTT CTAATTCAGG chrIII-NC_003074:1824618 16 1.64e-04 TCTAGGTTGT TCTGTTTCTC ATACAGTCCA chrV-NC_003076:6225921-6 20 1.78e-04 CAGATTAACG TTTCTTTTCT TTTCTTATAT chrV-NC_003076:18000346- 58 1.78e-04 ATCAATAGAG TTTCCCTTTC TAAGACTACT chrV-NC_003076:6381195-6 25 1.78e-04 AAGTGATACT TTTCCCTTTC TGCCTATGAC chrV-NC_003076:23659088- 82 1.90e-04 ACTTCTCTAT TTTCTTTGTT TCATGTTCT chrI-NC_003070:20956673- 88 2.08e-04 GTCACGTGAT TCTTTTTTTT TTC chrIII-NC_003074:2328830 91 2.08e-04 ATAGCCTTTT TTTTTTTTTC chrI-NC_003070:27292918- 36 2.19e-04 AAGTTTGTAA TCCTTTTCCC AAAGGGGTCA chrII-NC_003071:13005722 80 2.35e-04 CGTCGTTTAC TTTCCTTTTC ACCATTTCCT chrIV-NC_003075:8435508- 74 2.63e-04 TTGGTTAGTG TTTTTTTCCT GGTTTTACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:22997200- 6.6e-07 87_[+3]_3 chrIV-NC_003075:14207916 6.6e-07 19_[+3]_71 chrI-NC_003070:6579449-6 6.6e-07 74_[+3]_16 chrI-NC_003070:8717843-8 6.6e-07 80_[+3]_10 chrII-NC_003071:436660-4 6.6e-07 86_[+3]_4 chrII-NC_003071:999352-9 6.6e-07 37_[+3]_53 chrII-NC_003071:9580218- 6.6e-07 8_[+3]_82 chrII-NC_003071:15784362 1.1e-06 34_[+3]_56 chrIII-NC_003074:5121329 1.1e-06 43_[+3]_47 chrV-NC_003076:6812378-6 2.2e-06 1_[+3]_89 chrV-NC_003076:5616726-5 2.2e-06 89_[+3]_1 chrI-NC_003070:9589553-9 2.2e-06 83_[+3]_7 chrIII-NC_003074:1373643 2.2e-06 60_[+3]_30 chrV-NC_003076:5866573-5 2.9e-06 35_[+3]_55 chrII-NC_003071:16221715 2.9e-06 58_[+3]_32 chrI-NC_003070:13228460- 4.7e-06 12_[+3]_78 chrIII-NC_003074:8238773 5.3e-06 78_[+3]_12 chrV-NC_003076:26837903- 8e-06 76_[+3]_14 chrV-NC_003076:26138524- 8e-06 85_[+3]_5 chrV-NC_003076:1891492-1 1.1e-05 78_[+3]_12 chrII-NC_003071:8057123- 1.1e-05 30_[+3]_60 chrV-NC_003076:3478444-3 1.2e-05 77_[+3]_13 chrV-NC_003076:26805608- 1.5e-05 34_[+3]_56 chrII-NC_003071:18635636 1.5e-05 74_[+3]_16 chrII-NC_003071:11771581 1.5e-05 21_[+3]_69 chrIII-NC_003074:1216748 2e-05 8_[+3]_82 chrV-NC_003076:26012556- 2.3e-05 88_[+3]_2 chrIII-NC_003074:5222127 2.3e-05 41_[+3]_49 chrIII-NC_003074:2232813 2.3e-05 6_[+3]_84 chrII-NC_003071:18414199 2.7e-05 65_[+3]_25 chrIII-NC_003074:9959827 3.2e-05 82_[+3]_8 chrIII-NC_003074:4388456 3.2e-05 63_[+3]_27 chrV-NC_003076:7265876-7 4.4e-05 34_[+3]_56 chrI-NC_003070:11630779- 4.4e-05 90_[+3] chrIII-NC_003074:2263424 4.4e-05 32_[+3]_58 chrIII-NC_003074:7507439 4.4e-05 1_[+3]_89 chrIII-NC_003074:2058747 4.4e-05 56_[+3]_34 chrI-NC_003070:2120819-2 5.4e-05 89_[+3]_1 chrII-NC_003071:9523120- 5.4e-05 39_[+3]_51 chrII-NC_003071:17819849 5.4e-05 51_[+3]_39 chrIII-NC_003074:5047285 5.4e-05 26_[+3]_64 chrIII-NC_003074:467796- 5.4e-05 54_[+3]_36 chrV-NC_003076:22779197- 6e-05 88_[+3]_2 chrIV-NC_003075:17398893 6.9e-05 73_[+3]_17 chrIII-NC_003074:5293159 6.9e-05 58_[+3]_32 chrV-NC_003076:1894196-1 8.1e-05 83_[+3]_7 chrV-NC_003076:10455493- 8.1e-05 21_[+3]_69 chrI-NC_003070:28236998- 8.1e-05 17_[+3]_73 chrI-NC_003070:29216817- 8.1e-05 56_[+3]_34 chrII-NC_003071:16641474 8.1e-05 47_[+3]_43 chrII-NC_003071:17743083 8.1e-05 5_[+3]_85 chrII-NC_003071:14331382 8.1e-05 76_[+3]_14 chrII-NC_003071:10191605 8.6e-05 44_[+3]_46 chrIII-NC_003074:5236784 8.6e-05 41_[+3]_49 chrV-NC_003076:21900890- 9.1e-05 88_[+3]_2 chrI-NC_003070:9270027-9 0.0001 55_[+3]_35 chrIII-NC_003074:4608315 0.00011 86_[+3]_4 chrI-NC_003070:9264433-9 0.00011 58_[+3]_32 chrIV-NC_003075:14902725 0.00012 26_[+3]_64 chrIV-NC_003075:13013992 0.00012 10_[+3]_80 chrI-NC_003070:21192338- 0.00014 54_[+3]_36 chrI-NC_003070:10693165- 0.00014 50_[+3]_40 chrII-NC_003071:18690235 0.00014 26_[+3]_64 chrIV-NC_003075:13016189 0.00015 11_[+3]_79 chrIII-NC_003074:1824618 0.00016 15_[+3]_75 chrV-NC_003076:6225921-6 0.00018 19_[+3]_71 chrV-NC_003076:18000346- 0.00018 57_[+3]_33 chrV-NC_003076:6381195-6 0.00018 24_[+3]_66 chrV-NC_003076:23659088- 0.00019 81_[+3]_9 chrI-NC_003070:20956673- 0.00021 87_[+3]_3 chrIII-NC_003074:2328830 0.00021 90_[+3] chrI-NC_003070:27292918- 0.00022 35_[+3]_55 chrII-NC_003071:13005722 0.00024 79_[+3]_11 chrIV-NC_003075:8435508- 0.00026 73_[+3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=10 seqs=74 chrV-NC_003076:22997200- ( 88) TCTCTCTCTC 1 chrIV-NC_003075:14207916 ( 20) TCTCTCTCTC 1 chrI-NC_003070:6579449-6 ( 75) TCTCTCTCTC 1 chrI-NC_003070:8717843-8 ( 81) TCTCTCTCTC 1 chrII-NC_003071:436660-4 ( 87) TCTCTCTCTC 1 chrII-NC_003071:999352-9 ( 38) TCTCTCTCTC 1 chrII-NC_003071:9580218- ( 9) TCTCTCTCTC 1 chrII-NC_003071:15784362 ( 35) TCTCTCTCCC 1 chrIII-NC_003074:5121329 ( 44) TCTCTCTCCC 1 chrV-NC_003076:6812378-6 ( 2) TCTCTTTCTC 1 chrV-NC_003076:5616726-5 ( 90) TCTCTTTCTC 1 chrI-NC_003070:9589553-9 ( 84) TCTCTTTCTC 1 chrIII-NC_003074:1373643 ( 61) TCTCTTTCTC 1 chrV-NC_003076:5866573-5 ( 36) TCTCTTTCCC 1 chrII-NC_003071:16221715 ( 59) TCTCTTTCCC 1 chrI-NC_003070:13228460- ( 13) TCTCTCTTCC 1 chrIII-NC_003074:8238773 ( 79) TCTCTCTGTC 1 chrV-NC_003076:26837903- ( 77) TCTCTCTCTT 1 chrV-NC_003076:26138524- ( 86) TCTCTCTCTT 1 chrV-NC_003076:1891492-1 ( 79) TTTCTCTCCC 1 chrII-NC_003071:8057123- ( 31) TCTCTCTCCT 1 chrV-NC_003076:3478444-3 ( 78) TCTCTTTTCC 1 chrV-NC_003076:26805608- ( 35) TCTTTCTCTC 1 chrII-NC_003071:18635636 ( 75) TCTCTTTGTC 1 chrII-NC_003071:11771581 ( 22) TCTCTTTGTC 1 chrIII-NC_003074:1216748 ( 9) TTTCTTTCTC 1 chrV-NC_003076:26012556- ( 89) TCTCTTTCCT 1 chrIII-NC_003074:5222127 ( 42) TTTCTTTCCC 1 chrIII-NC_003074:2232813 ( 7) TTTCTTTCCC 1 chrII-NC_003071:18414199 ( 66) TGTCTCTCTC 1 chrIII-NC_003074:9959827 ( 83) TCTCTCTTTT 1 chrIII-NC_003074:4388456 ( 64) TCTCTCTTTT 1 chrV-NC_003076:7265876-7 ( 35) TCTTTCTTTC 1 chrI-NC_003070:11630779- ( 91) TCTTTCTTTC 1 chrIII-NC_003074:2263424 ( 33) TTTCTCTCTT 1 chrIII-NC_003074:7507439 ( 2) TCTTTCTTTC 1 chrIII-NC_003074:2058747 ( 57) TCTCTCTGCT 1 chrI-NC_003070:2120819-2 ( 90) TCTTTCTTCC 1 chrII-NC_003071:9523120- ( 40) TCCCTTTCTC 1 chrII-NC_003071:17819849 ( 52) TCTCTTTTTT 1 chrIII-NC_003074:5047285 ( 27) TTTCTTTTTC 1 chrIII-NC_003074:467796- ( 55) TTTCTTTTTC 1 chrV-NC_003076:22779197- ( 89) TTTCTTTTCC 1 chrIV-NC_003075:17398893 ( 74) TTTTTCTCTC 1 chrIII-NC_003074:5293159 ( 59) TTTCTTTGTC 1 chrV-NC_003076:1894196-1 ( 84) TTTCTTTCTT 1 chrV-NC_003076:10455493- ( 22) TCTTTTTTTC 1 chrI-NC_003070:28236998- ( 18) TCTTTCTCCT 1 chrI-NC_003070:29216817- ( 57) TCTTTCTCCT 1 chrII-NC_003071:16641474 ( 48) TCTCCCTGTC 1 chrII-NC_003071:17743083 ( 6) TCTTTTTTTC 1 chrII-NC_003071:14331382 ( 77) TCTCTTTGCT 1 chrII-NC_003071:10191605 ( 45) TTTCTTTCCT 1 chrIII-NC_003074:5236784 ( 42) TTTCTTTCCT 1 chrV-NC_003076:21900890- ( 89) TGTCTCTTTC 1 chrI-NC_003070:9270027-9 ( 56) TCTTTTTGCC 1 chrIII-NC_003074:4608315 ( 87) TGTCTCTGTC 1 chrI-NC_003070:9264433-9 ( 59) TCTCCTTGCC 1 chrIV-NC_003075:14902725 ( 27) TGTCTTTTTC 1 chrIV-NC_003075:13013992 ( 11) TTCCTCTCTC 1 chrI-NC_003070:21192338- ( 55) TCTTCTTCCC 1 chrI-NC_003070:10693165- ( 51) TCTCTTTCAC 1 chrII-NC_003071:18690235 ( 27) TGTCTTTCTT 1 chrIV-NC_003075:13016189 ( 12) TCTTTCTTTT 1 chrIII-NC_003074:1824618 ( 16) TCTGTTTCTC 1 chrV-NC_003076:6225921-6 ( 20) TTTCTTTTCT 1 chrV-NC_003076:18000346- ( 58) TTTCCCTTTC 1 chrV-NC_003076:6381195-6 ( 25) TTTCCCTTTC 1 chrV-NC_003076:23659088- ( 82) TTTCTTTGTT 1 chrI-NC_003070:20956673- ( 88) TCTTTTTTTT 1 chrIII-NC_003074:2328830 ( 91) TTTTTTTTTC 1 chrI-NC_003070:27292918- ( 36) TCCTTTTCCC 1 chrII-NC_003071:13005722 ( 80) TTTCCTTTTC 1 chrIV-NC_003075:8435508- ( 74) TTTTTTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 11.0669 E= 5.5e-019 -1285 -1285 -1285 166 -1285 182 -146 -16 -1285 -218 -1285 160 -1285 204 -378 -46 -1285 -118 -1285 154 -1285 136 -1285 74 -1285 -1285 -1285 166 -1285 155 -32 -3 -453 88 -1285 104 -1285 196 -1285 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 74 E= 5.5e-019 0.000000 0.000000 0.000000 1.000000 0.000000 0.648649 0.067568 0.283784 0.000000 0.040541 0.000000 0.959459 0.000000 0.756757 0.013514 0.229730 0.000000 0.081081 0.000000 0.918919 0.000000 0.472973 0.000000 0.527027 0.000000 0.000000 0.000000 1.000000 0.000000 0.540541 0.148649 0.310811 0.013514 0.337838 0.000000 0.648649 0.000000 0.716216 0.000000 0.283784 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- T[CT]T[CT]T[TC]T[CT][TC][CT] -------------------------------------------------------------------------------- Time 149.78 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 10 sites = 62 llr = 543 E-value = 6.0e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 1:68a99131 pos.-specific C 9a32:::::: probability G ::1:::::78 matrix T ::11:118:1 bits 2.4 * 2.2 * 2.0 * 1.7 ** Relative 1.5 ** * * Entropy 1.2 ** *** ** (12.6 bits) 1.0 ** *** ** 0.7 ** ******* 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CCAAAAATGG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:16563580- 60 1.13e-06 TTCTGTTTTA CCAAAAATGG CAAAAAGTAA chrV-NC_003076:3048829-3 67 1.13e-06 AATAAAACTT CCAAAAATGG GTTGTATATA chrII-NC_003071:14956344 15 1.13e-06 CGAATATTTA CCAAAAATGG AAGATTCTAT chrII-NC_003071:383323-3 54 1.13e-06 ACGACTGTTA CCAAAAATGG AGTTAACGGC chrIII-NC_003074:4732994 39 1.13e-06 AAAAACCTTT CCAAAAATGG CAAAGAACCG chrII-NC_003071:8692383- 48 2.84e-06 GATTCGATTT CCCCAAATGG CAAAAGAAAA chrIV-NC_003075:9257678- 16 4.75e-06 CCATATCTTA CCAAAAATAG AAAAAGAAAC chrI-NC_003070:6335906-6 51 4.75e-06 CCAAAATATT CCAAAAATAG ATTTGGCGAT chrII-NC_003071:18811088 74 4.75e-06 TTAAGAAAGA CCAAAAATAG CATATTTTGA chrV-NC_003076:24878541- 4 5.87e-06 TAT CCCAAAATAG AAGCATTCAA chrIV-NC_003075:12043865 43 6.54e-06 GAATCAAAAT CCGAAAATGG TAAAAAAAAC chrV-NC_003076:24415564- 35 7.66e-06 TCTCATATAC CCAAAAAAGG ATGGAAACTT chrIV-NC_003075:15205277 60 8.32e-06 TCATATTTTA CCCAAAAAGG ATCAACCATT chrI-NC_003070:23075613- 86 9.45e-06 ACACACTTTT CCTAAAATGG CAATC chrII-NC_003071:9577588- 43 9.45e-06 AAGAAAGAAG CCTAAAATGG CTAAAAGGTT chrIII-NC_003074:1136463 50 9.45e-06 TGCTTGTTCT CCTAAAATGG AATTATCTTT chrII-NC_003071:14735573 75 1.12e-05 AAAAGGAAAA CCAAAAACGG CATAGTTTTG chrIII-NC_003074:2314802 10 1.12e-05 TTTTTATTT CCACAAATAG GTGAAAAAAA chrV-NC_003076:206010-20 22 1.35e-05 CAAAAATATT CCATAAATGG TTAACACAAA chrI-NC_003070:8595048-8 68 1.35e-05 AATTCAAAAC CCAAAATTGG AAACCCCTAA chrV-NC_003076:17363432- 84 1.74e-05 AAAATCTCAG CCGCAAATGG ATGTCTC chrIII-NC_003074:5561291 15 1.74e-05 TTAAATTTAT CCAAATATGG AAGTGAGCCC chrIII-NC_003074:2123356 52 1.74e-05 AGCAAAGCCA CCAAATATGG AAAATTGCTA chrI-NC_003070:27224204- 76 2.00e-05 CTCGAAAGAG CCAAAAATGA GAGACAAACC chrI-NC_003070:2990781-2 36 2.39e-05 AAAAAGGACC ACAAAAATGG AACCAAAAGA chrII-NC_003071:14224178 43 2.39e-05 AATCTGTGGA ACAAAAATGG CAAAAATATT chrIII-NC_003074:3366520 78 2.39e-05 AGAGTGTTGA CCAAACATGG ACTTAAGCCC chrV-NC_003076:17550144- 66 2.65e-05 CACAAATGTC CCCAAAATGA TGGGACACAC chrIII-NC_003074:2058364 42 2.65e-05 GCTGAGAGTG CCCAAAAGGG TTTGCCAAAT chrIV-NC_003075:16689014 65 3.15e-05 ATTATACGTT ACCAAAATGG TCCATTGATT chrI-NC_003070:28673898- 72 3.15e-05 ATATTTATAT ACCAAAATGG CACATAAATC chrIII-NC_003074:5121329 20 3.15e-05 CAACAAAGCG CCCCAAAAGG AGCGTCGCTT chrV-NC_003076:26805608- 61 3.28e-05 TATATCGACT CCCATAATGG CAATCTTAGC chrI-NC_003070:4904078-4 66 3.62e-05 CACAGTAGAT CCAAAAAAAG CCACACAAAA chrIII-NC_003074:1847014 40 3.69e-05 GTAATACATA CCACAATTGG GTTGGTGATA chrV-NC_003076:26042698- 15 3.82e-05 TCACAAGGGA CCCAAAAAAG ATAACATGCT chrI-NC_003070:9696469-9 57 3.82e-05 CCGGATCAGC CCCAAAAAAG CCAAGTTTTT chrI-NC_003070:25046709- 1 4.38e-05 . CCAAAAATTG ATCTTTCATC chrII-NC_003071:17743083 59 4.38e-05 AAGTGGTGCT CCACATATGG TAAGATAGGT chrI-NC_003070:13228460- 46 4.64e-05 TTTGGTTTGT CCAAAAACAG CAAAAAGTAA chrII-NC_003071:519691-5 27 4.64e-05 AGAAGAGGGT CCACAAATGA AGAGGAGTTT chrI-NC_003070:2395072-2 83 5.33e-05 TAATTTGAAG CCCAAAATTG ATATATGG chrI-NC_003070:28378932- 25 5.33e-05 AATACTTTTT CCATAAATAG TAGTATACAT chrV-NC_003076:22997200- 65 5.55e-05 AATAAAATTT CCCCAAAGGG ACCATTGATC chrII-NC_003071:10191605 81 5.55e-05 TTTCTCGTTC CCACTAATGG CCCCATTCTT chrV-NC_003076:7265876-7 56 6.99e-05 TTAAACTTTG CCGTAAATGG GTCTGTTTGG chrI-NC_003070:9307641-9 19 6.99e-05 TGAGAAATTA CCAAAAATAA AAACGATGTC chrIV-NC_003075:15231291 30 7.72e-05 AGAGAAGGGC CCCCAAATGT TTGGGAAAGA chrI-NC_003070:10802081- 80 7.72e-05 AGTGGCCTAC CCAAACATAG CATCAAATTT chrII-NC_003071:13276540 15 7.72e-05 CAGTGTTAAA ACAAAAATAG GTGAATTTAC chrV-NC_003076:26641487- 79 8.46e-05 CAAGCAACAC CCAATAATAG AAACTTCAAA chrII-NC_003071:17752015 49 8.46e-05 TTTTGCTGTA CCCAAAATAA AATCTATAAA chrI-NC_003070:1400775-1 13 9.26e-05 GGCTATGAAA CCAAAAATAT AATCGAACAT chrI-NC_003070:6459719-6 76 9.26e-05 TAGCAATTTC CCGAAAATGA TGCTAACGTG chrII-NC_003071:15692135 81 9.26e-05 CATCAGTTTA CCAAAAATAT CTTCTTGCAT chrIV-NC_003075:10381187 71 1.10e-04 TATCAAATTA CCTTAAATGG GTTCATAAAG chrV-NC_003076:4221096-4 52 1.18e-04 ACTAGTACTA ACAAAAAAGG GATGGCTGGT chrII-NC_003071:19299005 31 1.18e-04 TAAATGGGAC CCACAATTAG GCTTTTTTTG chrI-NC_003070:26100213- 37 1.24e-04 TTCAAATGCA TCCAAAATGG TTATAACACA chrIV-NC_003075:5738986- 68 1.34e-04 TCCAGCCTGT CCAAAAAAGT CCTCCCAACG chrI-NC_003070:18360496- 59 1.34e-04 GATTTAAGTT CCCAAATCGG GTAAATAAAT chrV-NC_003076:3396232-3 7 1.45e-04 AGTCAA CCAAATTTGG AGGATGTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:16563580- 1.1e-06 59_[+4]_31 chrV-NC_003076:3048829-3 1.1e-06 66_[+4]_24 chrII-NC_003071:14956344 1.1e-06 14_[+4]_76 chrII-NC_003071:383323-3 1.1e-06 53_[+4]_37 chrIII-NC_003074:4732994 1.1e-06 38_[+4]_52 chrII-NC_003071:8692383- 2.8e-06 47_[+4]_43 chrIV-NC_003075:9257678- 4.7e-06 15_[+4]_75 chrI-NC_003070:6335906-6 4.7e-06 50_[+4]_40 chrII-NC_003071:18811088 4.7e-06 73_[+4]_17 chrV-NC_003076:24878541- 5.9e-06 3_[+4]_87 chrIV-NC_003075:12043865 6.5e-06 42_[+4]_48 chrV-NC_003076:24415564- 7.7e-06 34_[+4]_56 chrIV-NC_003075:15205277 8.3e-06 59_[+4]_31 chrI-NC_003070:23075613- 9.5e-06 85_[+4]_5 chrII-NC_003071:9577588- 9.5e-06 42_[+4]_48 chrIII-NC_003074:1136463 9.5e-06 49_[+4]_41 chrII-NC_003071:14735573 1.1e-05 74_[+4]_16 chrIII-NC_003074:2314802 1.1e-05 9_[+4]_81 chrV-NC_003076:206010-20 1.4e-05 21_[+4]_69 chrI-NC_003070:8595048-8 1.4e-05 67_[+4]_23 chrV-NC_003076:17363432- 1.7e-05 83_[+4]_7 chrIII-NC_003074:5561291 1.7e-05 14_[+4]_76 chrIII-NC_003074:2123356 1.7e-05 51_[+4]_39 chrI-NC_003070:27224204- 2e-05 75_[+4]_15 chrI-NC_003070:2990781-2 2.4e-05 35_[+4]_55 chrII-NC_003071:14224178 2.4e-05 42_[+4]_48 chrIII-NC_003074:3366520 2.4e-05 77_[+4]_13 chrV-NC_003076:17550144- 2.7e-05 65_[+4]_25 chrIII-NC_003074:2058364 2.7e-05 41_[+4]_49 chrIV-NC_003075:16689014 3.1e-05 64_[+4]_26 chrI-NC_003070:28673898- 3.1e-05 71_[+4]_19 chrIII-NC_003074:5121329 3.1e-05 19_[+4]_71 chrV-NC_003076:26805608- 3.3e-05 60_[+4]_30 chrI-NC_003070:4904078-4 3.6e-05 65_[+4]_25 chrIII-NC_003074:1847014 3.7e-05 39_[+4]_51 chrV-NC_003076:26042698- 3.8e-05 14_[+4]_76 chrI-NC_003070:9696469-9 3.8e-05 56_[+4]_34 chrI-NC_003070:25046709- 4.4e-05 [+4]_90 chrII-NC_003071:17743083 4.4e-05 58_[+4]_32 chrI-NC_003070:13228460- 4.6e-05 45_[+4]_45 chrII-NC_003071:519691-5 4.6e-05 26_[+4]_64 chrI-NC_003070:2395072-2 5.3e-05 82_[+4]_8 chrI-NC_003070:28378932- 5.3e-05 24_[+4]_66 chrV-NC_003076:22997200- 5.5e-05 64_[+4]_26 chrII-NC_003071:10191605 5.5e-05 80_[+4]_10 chrV-NC_003076:7265876-7 7e-05 55_[+4]_35 chrI-NC_003070:9307641-9 7e-05 18_[+4]_72 chrIV-NC_003075:15231291 7.7e-05 29_[+4]_61 chrI-NC_003070:10802081- 7.7e-05 79_[+4]_11 chrII-NC_003071:13276540 7.7e-05 14_[+4]_76 chrV-NC_003076:26641487- 8.5e-05 78_[+4]_12 chrII-NC_003071:17752015 8.5e-05 48_[+4]_42 chrI-NC_003070:1400775-1 9.3e-05 12_[+4]_78 chrI-NC_003070:6459719-6 9.3e-05 75_[+4]_15 chrII-NC_003071:15692135 9.3e-05 80_[+4]_10 chrIV-NC_003075:10381187 0.00011 70_[+4]_20 chrV-NC_003076:4221096-4 0.00012 51_[+4]_39 chrII-NC_003071:19299005 0.00012 30_[+4]_60 chrI-NC_003070:26100213- 0.00012 36_[+4]_54 chrIV-NC_003075:5738986- 0.00013 67_[+4]_23 chrI-NC_003070:18360496- 0.00013 58_[+4]_32 chrV-NC_003076:3396232-3 0.00015 6_[+4]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=10 seqs=62 chrV-NC_003076:16563580- ( 60) CCAAAAATGG 1 chrV-NC_003076:3048829-3 ( 67) CCAAAAATGG 1 chrII-NC_003071:14956344 ( 15) CCAAAAATGG 1 chrII-NC_003071:383323-3 ( 54) CCAAAAATGG 1 chrIII-NC_003074:4732994 ( 39) CCAAAAATGG 1 chrII-NC_003071:8692383- ( 48) CCCCAAATGG 1 chrIV-NC_003075:9257678- ( 16) CCAAAAATAG 1 chrI-NC_003070:6335906-6 ( 51) CCAAAAATAG 1 chrII-NC_003071:18811088 ( 74) CCAAAAATAG 1 chrV-NC_003076:24878541- ( 4) CCCAAAATAG 1 chrIV-NC_003075:12043865 ( 43) CCGAAAATGG 1 chrV-NC_003076:24415564- ( 35) CCAAAAAAGG 1 chrIV-NC_003075:15205277 ( 60) CCCAAAAAGG 1 chrI-NC_003070:23075613- ( 86) CCTAAAATGG 1 chrII-NC_003071:9577588- ( 43) CCTAAAATGG 1 chrIII-NC_003074:1136463 ( 50) CCTAAAATGG 1 chrII-NC_003071:14735573 ( 75) CCAAAAACGG 1 chrIII-NC_003074:2314802 ( 10) CCACAAATAG 1 chrV-NC_003076:206010-20 ( 22) CCATAAATGG 1 chrI-NC_003070:8595048-8 ( 68) CCAAAATTGG 1 chrV-NC_003076:17363432- ( 84) CCGCAAATGG 1 chrIII-NC_003074:5561291 ( 15) CCAAATATGG 1 chrIII-NC_003074:2123356 ( 52) CCAAATATGG 1 chrI-NC_003070:27224204- ( 76) CCAAAAATGA 1 chrI-NC_003070:2990781-2 ( 36) ACAAAAATGG 1 chrII-NC_003071:14224178 ( 43) ACAAAAATGG 1 chrIII-NC_003074:3366520 ( 78) CCAAACATGG 1 chrV-NC_003076:17550144- ( 66) CCCAAAATGA 1 chrIII-NC_003074:2058364 ( 42) CCCAAAAGGG 1 chrIV-NC_003075:16689014 ( 65) ACCAAAATGG 1 chrI-NC_003070:28673898- ( 72) ACCAAAATGG 1 chrIII-NC_003074:5121329 ( 20) CCCCAAAAGG 1 chrV-NC_003076:26805608- ( 61) CCCATAATGG 1 chrI-NC_003070:4904078-4 ( 66) CCAAAAAAAG 1 chrIII-NC_003074:1847014 ( 40) CCACAATTGG 1 chrV-NC_003076:26042698- ( 15) CCCAAAAAAG 1 chrI-NC_003070:9696469-9 ( 57) CCCAAAAAAG 1 chrI-NC_003070:25046709- ( 1) CCAAAAATTG 1 chrII-NC_003071:17743083 ( 59) CCACATATGG 1 chrI-NC_003070:13228460- ( 46) CCAAAAACAG 1 chrII-NC_003071:519691-5 ( 27) CCACAAATGA 1 chrI-NC_003070:2395072-2 ( 83) CCCAAAATTG 1 chrI-NC_003070:28378932- ( 25) CCATAAATAG 1 chrV-NC_003076:22997200- ( 65) CCCCAAAGGG 1 chrII-NC_003071:10191605 ( 81) CCACTAATGG 1 chrV-NC_003076:7265876-7 ( 56) CCGTAAATGG 1 chrI-NC_003070:9307641-9 ( 19) CCAAAAATAA 1 chrIV-NC_003075:15231291 ( 30) CCCCAAATGT 1 chrI-NC_003070:10802081- ( 80) CCAAACATAG 1 chrII-NC_003071:13276540 ( 15) ACAAAAATAG 1 chrV-NC_003076:26641487- ( 79) CCAATAATAG 1 chrII-NC_003071:17752015 ( 49) CCCAAAATAA 1 chrI-NC_003070:1400775-1 ( 13) CCAAAAATAT 1 chrI-NC_003070:6459719-6 ( 76) CCGAAAATGA 1 chrII-NC_003071:15692135 ( 81) CCAAAAATAT 1 chrIV-NC_003075:10381187 ( 71) CCTTAAATGG 1 chrV-NC_003076:4221096-4 ( 52) ACAAAAAAGG 1 chrII-NC_003071:19299005 ( 31) CCACAATTAG 1 chrI-NC_003070:26100213- ( 37) TCCAAAATGG 1 chrIV-NC_003075:5738986- ( 68) CCAAAAAAGT 1 chrI-NC_003070:18360496- ( 59) CCCAAATCGG 1 chrV-NC_003076:3396232-3 ( 7) CCAAATTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 10.2244 E= 6.0e-010 -170 227 -1260 -429 -1260 244 -1260 -1260 93 57 -152 -229 127 -5 -1260 -229 160 -1260 -1260 -271 153 -251 -1260 -229 155 -1260 -1260 -197 -128 -193 -252 132 -11 -1260 187 -329 -170 -1260 217 -229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 62 E= 6.0e-010 0.096774 0.887097 0.000000 0.016129 0.000000 1.000000 0.000000 0.000000 0.596774 0.274194 0.064516 0.064516 0.758065 0.177419 0.000000 0.064516 0.951613 0.000000 0.000000 0.048387 0.903226 0.032258 0.000000 0.064516 0.919355 0.000000 0.000000 0.080645 0.129032 0.048387 0.032258 0.790323 0.290323 0.000000 0.677419 0.032258 0.096774 0.000000 0.838710 0.064516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- CC[AC]AAAAT[GA]G -------------------------------------------------------------------------------- Time 191.60 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 8 sites = 45 llr = 402 E-value = 7.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 14:a:::: pos.-specific C 23a:a::2 probability G 51:::a:8 matrix T 22::::a: bits 2.4 * ** 2.2 * ** 2.0 * ** 1.7 ****** Relative 1.5 ****** Entropy 1.2 ****** (12.9 bits) 1.0 ****** 0.7 ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GACACGTG consensus TC C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV-NC_003076:26286499- 63 3.98e-06 GGGTGAAAAT GCCACGTG GAATTTATGA chrIV-NC_003075:13013992 35 3.98e-06 CTTACAAAAA GCCACGTG GACTGATCGA chrIII-NC_003074:2342278 11 3.98e-06 GGGGAACAAA GCCACGTG AAGGTGGGAA chrV-NC_003076:24993918- 67 1.08e-05 GTCACATCTC GACACGTG TCCACTATTC chrV-NC_003076:3396232-3 33 1.08e-05 TACCGAAGCT GACACGTG TCACGTAAAG chrV-NC_003076:21763609- 54 1.08e-05 AAGAGGAAAT GACACGTG TTTACTATGG chrV-NC_003076:9133324-9 10 1.08e-05 CCCCATTAC GACACGTG ACAGGCTGGG chrI-NC_003070:27596253- 3 1.08e-05 AC GACACGTG TCTACTATCA chrI-NC_003070:21207023- 79 1.08e-05 GTTCCACGTA GACACGTG TCCACATAAT chrII-NC_003071:17809790 15 1.08e-05 ACAAGACAGA GACACGTG AACAATCAGA chrIII-NC_003074:1803821 48 1.08e-05 GTATGGTTGA GACACGTG AGTTGTGTCA chrIV-NC_003075:1495507- 55 1.76e-05 GCTGGCGAGT GTCACGTG TTCTTCACTG chrI-NC_003070:6174575-6 4 1.76e-05 TTG GTCACGTG ATGGTTACTA chrI-NC_003070:20956673- 78 1.76e-05 TTGTCCGATT GTCACGTG ATTCTTTTTT chrV-NC_003076:3771493-3 37 2.55e-05 ATCATACTAC GCCACGTC ATTCTTTAGA chrIV-NC_003075:15205277 88 2.55e-05 TTGGATTTAC GCCACGTC ATTAA chrII-NC_003071:15641842 23 2.55e-05 AAAGTCACAT GCCACGTC AGTTAACTTT chrV-NC_003076:21154905- 19 3.89e-05 CGTCCTGTCG TCCACGTG TGGTGATGGC chrV-NC_003076:26851827- 74 3.89e-05 TAGGTCATGT TCCACGTG CCTTTTTTTC chrV-NC_003076:21900890- 33 3.89e-05 TACTAGTATA CACACGTG AAATGAAAAC chrI-NC_003070:27498072- 66 3.89e-05 GCCATTCCCC TCCACGTG GCATAATCCA chrI-NC_003070:10353987- 86 3.89e-05 CTTTTTCTTA CACACGTG GTCCACT chrI-NC_003070:8719400-8 58 3.89e-05 AAACAAAAGA TCCACGTG ACGTGGTTGT chrII-NC_003071:16221715 42 3.89e-05 ACGTAGGATA CACACGTG TACATCAAAT chrV-NC_003076:26012556- 12 4.57e-05 AGATGACGTG GACACGTC GTTGTCAATG chrI-NC_003070:9696469-9 77 4.57e-05 CCAAGTTTTT GACACGTC ATTAGTGATC chrV-NC_003076:25086892- 15 5.72e-05 TGGGAGAATG TACACGTG TACGGTAGAG chrI-NC_003070:28313380- 55 5.72e-05 CACAAAACAG TACACGTG GCATGATCTT chrI-NC_003070:8839847-8 25 5.72e-05 CCCTACATGC TACACGTG CCTAACCTAA chrII-NC_003071:18414199 4 6.12e-05 GGG GGCACGTG TCATCTCGTA chrV-NC_003076:23659088- 38 6.80e-05 TTGGTCCCGC CTCACGTG ATTATTCCTC chrV-NC_003076:23132906- 21 7.47e-05 GCTTTTTTGA GTCACGTC AATCATTTAC chrI-NC_003070:1469246-1 21 7.47e-05 CTAACGAAGT GTCACGTC ACTTCCTATC chrV-NC_003076:26663110- 73 9.02e-05 TGACATCACT CCCACGTC CTCCATCCGT chrIV-NC_003075:7868931- 2 9.02e-05 G TTCACGTG AAGAGGGCAA chrII-NC_003071:19299005 57 9.02e-05 TTTGGCCAAG TTCACGTG CACTTCACGT chrV-NC_003076:5227549-5 15 9.69e-05 ATAAGGAAAC ACCACGTG GACGTGGACC chrV-NC_003076:3864653-3 27 9.69e-05 ATTCGTTCCC ACCACGTG TCTCCTCAGG chrI-NC_003070:8598785-8 50 1.10e-04 ACGGACAGGG TCCACGTC AAGACGTAAT chrI-NC_003070:10978094- 26 1.10e-04 TAGGGAGGTT CACACGTC TATTATCATA chrIII-NC_003074:5047285 55 1.10e-04 TACGTCATCG CACACGTC TATCTTCTTT chrI-NC_003070:10365147- 66 1.22e-04 TTGTGAACCA AACACGTG TAATGATTTC chrIV-NC_003075:15231291 69 1.37e-04 AAATGATGGG CGCACGTG ACATTCGCTA chrV-NC_003076:24505426- 37 1.48e-04 CGTGTCTGAG TGCACGTG CTTCCATACA chrII-NC_003071:9523120- 31 1.66e-04 ATGATGTCCA ATCACGTG TTCCCTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:26286499- 4e-06 62_[+5]_30 chrIV-NC_003075:13013992 4e-06 34_[+5]_58 chrIII-NC_003074:2342278 4e-06 10_[+5]_82 chrV-NC_003076:24993918- 1.1e-05 66_[+5]_26 chrV-NC_003076:3396232-3 1.1e-05 32_[+5]_60 chrV-NC_003076:21763609- 1.1e-05 53_[+5]_39 chrV-NC_003076:9133324-9 1.1e-05 9_[+5]_83 chrI-NC_003070:27596253- 1.1e-05 2_[+5]_90 chrI-NC_003070:21207023- 1.1e-05 78_[+5]_14 chrII-NC_003071:17809790 1.1e-05 14_[+5]_78 chrIII-NC_003074:1803821 1.1e-05 47_[+5]_45 chrIV-NC_003075:1495507- 1.8e-05 54_[+5]_38 chrI-NC_003070:6174575-6 1.8e-05 3_[+5]_89 chrI-NC_003070:20956673- 1.8e-05 77_[+5]_15 chrV-NC_003076:3771493-3 2.5e-05 36_[+5]_56 chrIV-NC_003075:15205277 2.5e-05 87_[+5]_5 chrII-NC_003071:15641842 2.5e-05 22_[+5]_70 chrV-NC_003076:21154905- 3.9e-05 18_[+5]_74 chrV-NC_003076:26851827- 3.9e-05 73_[+5]_19 chrV-NC_003076:21900890- 3.9e-05 32_[+5]_60 chrI-NC_003070:27498072- 3.9e-05 65_[+5]_27 chrI-NC_003070:10353987- 3.9e-05 85_[+5]_7 chrI-NC_003070:8719400-8 3.9e-05 57_[+5]_35 chrII-NC_003071:16221715 3.9e-05 41_[+5]_51 chrV-NC_003076:26012556- 4.6e-05 11_[+5]_81 chrI-NC_003070:9696469-9 4.6e-05 76_[+5]_16 chrV-NC_003076:25086892- 5.7e-05 14_[+5]_78 chrI-NC_003070:28313380- 5.7e-05 54_[+5]_38 chrI-NC_003070:8839847-8 5.7e-05 24_[+5]_68 chrII-NC_003071:18414199 6.1e-05 3_[+5]_89 chrV-NC_003076:23659088- 6.8e-05 37_[+5]_55 chrV-NC_003076:23132906- 7.5e-05 20_[+5]_72 chrI-NC_003070:1469246-1 7.5e-05 20_[+5]_72 chrV-NC_003076:26663110- 9e-05 72_[+5]_20 chrIV-NC_003075:7868931- 9e-05 1_[+5]_91 chrII-NC_003071:19299005 9e-05 56_[+5]_36 chrV-NC_003076:5227549-5 9.7e-05 14_[+5]_78 chrV-NC_003076:3864653-3 9.7e-05 26_[+5]_66 chrI-NC_003070:8598785-8 0.00011 49_[+5]_43 chrI-NC_003070:10978094- 0.00011 25_[+5]_67 chrIII-NC_003074:5047285 0.00011 54_[+5]_38 chrI-NC_003070:10365147- 0.00012 65_[+5]_27 chrIV-NC_003075:15231291 0.00014 68_[+5]_24 chrV-NC_003076:24505426- 0.00015 36_[+5]_56 chrII-NC_003071:9523120- 0.00017 30_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=8 seqs=45 chrV-NC_003076:26286499- ( 63) GCCACGTG 1 chrIV-NC_003075:13013992 ( 35) GCCACGTG 1 chrIII-NC_003074:2342278 ( 11) GCCACGTG 1 chrV-NC_003076:24993918- ( 67) GACACGTG 1 chrV-NC_003076:3396232-3 ( 33) GACACGTG 1 chrV-NC_003076:21763609- ( 54) GACACGTG 1 chrV-NC_003076:9133324-9 ( 10) GACACGTG 1 chrI-NC_003070:27596253- ( 3) GACACGTG 1 chrI-NC_003070:21207023- ( 79) GACACGTG 1 chrII-NC_003071:17809790 ( 15) GACACGTG 1 chrIII-NC_003074:1803821 ( 48) GACACGTG 1 chrIV-NC_003075:1495507- ( 55) GTCACGTG 1 chrI-NC_003070:6174575-6 ( 4) GTCACGTG 1 chrI-NC_003070:20956673- ( 78) GTCACGTG 1 chrV-NC_003076:3771493-3 ( 37) GCCACGTC 1 chrIV-NC_003075:15205277 ( 88) GCCACGTC 1 chrII-NC_003071:15641842 ( 23) GCCACGTC 1 chrV-NC_003076:21154905- ( 19) TCCACGTG 1 chrV-NC_003076:26851827- ( 74) TCCACGTG 1 chrV-NC_003076:21900890- ( 33) CACACGTG 1 chrI-NC_003070:27498072- ( 66) TCCACGTG 1 chrI-NC_003070:10353987- ( 86) CACACGTG 1 chrI-NC_003070:8719400-8 ( 58) TCCACGTG 1 chrII-NC_003071:16221715 ( 42) CACACGTG 1 chrV-NC_003076:26012556- ( 12) GACACGTC 1 chrI-NC_003070:9696469-9 ( 77) GACACGTC 1 chrV-NC_003076:25086892- ( 15) TACACGTG 1 chrI-NC_003070:28313380- ( 55) TACACGTG 1 chrI-NC_003070:8839847-8 ( 25) TACACGTG 1 chrII-NC_003071:18414199 ( 4) GGCACGTG 1 chrV-NC_003076:23659088- ( 38) CTCACGTG 1 chrV-NC_003076:23132906- ( 21) GTCACGTC 1 chrI-NC_003070:1469246-1 ( 21) GTCACGTC 1 chrV-NC_003076:26663110- ( 73) CCCACGTC 1 chrIV-NC_003075:7868931- ( 2) TTCACGTG 1 chrII-NC_003071:19299005 ( 57) TTCACGTG 1 chrV-NC_003076:5227549-5 ( 15) ACCACGTG 1 chrV-NC_003076:3864653-3 ( 27) ACCACGTG 1 chrI-NC_003070:8598785-8 ( 50) TCCACGTC 1 chrI-NC_003070:10978094- ( 26) CACACGTC 1 chrIII-NC_003074:5047285 ( 55) CACACGTC 1 chrI-NC_003070:10365147- ( 66) AACACGTG 1 chrIV-NC_003075:15231291 ( 69) CGCACGTG 1 chrV-NC_003076:24505426- ( 37) TGCACGTG 1 chrII-NC_003071:9523120- ( 31) ATCACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 46500 bayes= 11.5596 E= 7.0e-005 -182 -5 140 -37 43 76 -148 -66 -1214 244 -1214 -1214 167 -1214 -1214 -1214 -1214 244 -1214 -1214 -1214 -1214 243 -1214 -1214 -1214 -1214 166 -1214 41 202 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.0e-005 0.088889 0.177778 0.488889 0.244444 0.422222 0.311111 0.066667 0.200000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.244444 0.755556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- [GT][ACT]CACGT[GC] -------------------------------------------------------------------------------- Time 232.69 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 10 sites = 29 llr = 289 E-value = 4.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A a:a:a2a172 pos.-specific C :::::::11: probability G :a:9:8:715 matrix T :::1:::113 bits 2.4 * 2.2 * 2.0 * * 1.7 ***** * Relative 1.5 ***** * Entropy 1.2 ******* (14.4 bits) 1.0 ******** 0.7 ******** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel AGAGAGAGAG consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:1950972-1 59 6.80e-07 CTAGGGCTTG AGAGAGAGAG AGAGAGAGAG chrII-NC_003071:893513-8 79 6.80e-07 GGAAAAGAGA AGAGAGAGAG AGATAAAATC chrIII-NC_003074:1880987 30 6.80e-07 GAAAATAGAT AGAGAGAGAG AGAGAATGAG chrIII-NC_003074:4608315 1 6.80e-07 . AGAGAGAGAG AGAGAGAGAG chrI-NC_003070:20187010- 69 1.83e-06 GATTTCTTCG AGAGAGAGAT AGACTGTATA chrIII-NC_003074:2012117 2 1.83e-06 A AGAGAGAGAT GGAGTTGAAG chrI-NC_003070:27175535- 67 2.63e-06 AGAGAGAAAG AGAGAGAGCG CTTTGGACTG chrI-NC_003070:19848591- 28 2.63e-06 AGAAAGAAAT AGAGAGAGGG GACCATTCTT chrIV-NC_003075:17397910 21 3.78e-06 AGTGGGACAT AGAGAGAGAA GAGCAGTAGT chrV-NC_003076:3515165-3 22 5.60e-06 AGGCATCAGA AGAGAAAGAG ACATGTCGAC chrII-NC_003071:519691-5 4 5.60e-06 GAG AGAGAAAGAG ATAAGAAGAG chrIII-NC_003074:4161788 59 5.60e-06 GAAGAATCCA AGAGAGACAG ATAGAGAAGA chrV-NC_003076:21045204- 90 6.29e-06 GAAAGTGATG AGAGAGAGTG T chrIV-NC_003075:17780863 27 6.29e-06 AGAGACAGAT AGAGAGAGTG AGAATAGAAG chrII-NC_003071:9577588- 1 6.29e-06 . AGAGAGAGTG TGTAGTGTAG chrV-NC_003076:23391713- 11 9.95e-06 CGTCATTTGC AGAGAGAGCT TTGATACTGG chrI-NC_003070:9267121-9 66 9.95e-06 TTGAAAATTG AGAGAGATAG ACTTTACTGT chrI-NC_003070:4230078-4 1 1.30e-05 . AGAGAAAGAT CTTTATGGGA chrV-NC_003076:10455493- 72 2.65e-05 GGGAGATGAT AGAGAGACAA TACACAAAAA chrIV-NC_003075:15291520 1 2.65e-05 . AGAGAGAAAT GGTTGTGATG chrI-NC_003070:25986115- 62 2.65e-05 AGAAACTACA AGAGAGATAT AAAGAAGAGC chrII-NC_003071:18809186 26 2.65e-05 AGTAGGTTCG AGAGAAAGAA GTACTTTCCC chrV-NC_003076:13937850- 39 4.03e-05 TGGAAGCTAT AGATAGAGAT ATAACAACAG chrII-NC_003071:15641842 7 4.79e-05 GATCTC AGAGAAAAAG TCACATGCCA chrII-NC_003071:14343662 45 5.23e-05 GAGAGGAGGA AGAGACAGGG AACAGAATGG chrII-NC_003071:8692383- 9 5.73e-05 TGAATGAC AGATAGAGAA GACGATGAAA chrV-NC_003076:7385658-7 32 6.87e-05 TCTTGGGAGA AGAGAGATGT TGAAGAAGAG chrI-NC_003070:27484307- 21 6.87e-05 GTTGGTATAC AGAGAGACCA AACATCTCGT chrIV-NC_003075:16689638 1 8.41e-05 . AGAGAAAAAT AAAGAGAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:1950972-1 6.8e-07 58_[+6]_32 chrII-NC_003071:893513-8 6.8e-07 78_[+6]_12 chrIII-NC_003074:1880987 6.8e-07 29_[+6]_61 chrIII-NC_003074:4608315 6.8e-07 [+6]_90 chrI-NC_003070:20187010- 1.8e-06 68_[+6]_22 chrIII-NC_003074:2012117 1.8e-06 1_[+6]_89 chrI-NC_003070:27175535- 2.6e-06 66_[+6]_24 chrI-NC_003070:19848591- 2.6e-06 27_[+6]_63 chrIV-NC_003075:17397910 3.8e-06 20_[+6]_70 chrV-NC_003076:3515165-3 5.6e-06 21_[+6]_69 chrII-NC_003071:519691-5 5.6e-06 3_[+6]_87 chrIII-NC_003074:4161788 5.6e-06 58_[+6]_32 chrV-NC_003076:21045204- 6.3e-06 89_[+6]_1 chrIV-NC_003075:17780863 6.3e-06 26_[+6]_64 chrII-NC_003071:9577588- 6.3e-06 [+6]_90 chrV-NC_003076:23391713- 9.9e-06 10_[+6]_80 chrI-NC_003070:9267121-9 9.9e-06 65_[+6]_25 chrI-NC_003070:4230078-4 1.3e-05 [+6]_90 chrV-NC_003076:10455493- 2.7e-05 71_[+6]_19 chrIV-NC_003075:15291520 2.7e-05 [+6]_90 chrI-NC_003070:25986115- 2.7e-05 61_[+6]_29 chrII-NC_003071:18809186 2.7e-05 25_[+6]_65 chrV-NC_003076:13937850- 4e-05 38_[+6]_52 chrII-NC_003071:15641842 4.8e-05 6_[+6]_84 chrII-NC_003071:14343662 5.2e-05 44_[+6]_46 chrII-NC_003071:8692383- 5.7e-05 8_[+6]_82 chrV-NC_003076:7385658-7 6.9e-05 31_[+6]_59 chrI-NC_003070:27484307- 6.9e-05 20_[+6]_70 chrIV-NC_003075:16689638 8.4e-05 [+6]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=10 seqs=29 chrV-NC_003076:1950972-1 ( 59) AGAGAGAGAG 1 chrII-NC_003071:893513-8 ( 79) AGAGAGAGAG 1 chrIII-NC_003074:1880987 ( 30) AGAGAGAGAG 1 chrIII-NC_003074:4608315 ( 1) AGAGAGAGAG 1 chrI-NC_003070:20187010- ( 69) AGAGAGAGAT 1 chrIII-NC_003074:2012117 ( 2) AGAGAGAGAT 1 chrI-NC_003070:27175535- ( 67) AGAGAGAGCG 1 chrI-NC_003070:19848591- ( 28) AGAGAGAGGG 1 chrIV-NC_003075:17397910 ( 21) AGAGAGAGAA 1 chrV-NC_003076:3515165-3 ( 22) AGAGAAAGAG 1 chrII-NC_003071:519691-5 ( 4) AGAGAAAGAG 1 chrIII-NC_003074:4161788 ( 59) AGAGAGACAG 1 chrV-NC_003076:21045204- ( 90) AGAGAGAGTG 1 chrIV-NC_003075:17780863 ( 27) AGAGAGAGTG 1 chrII-NC_003071:9577588- ( 1) AGAGAGAGTG 1 chrV-NC_003076:23391713- ( 11) AGAGAGAGCT 1 chrI-NC_003070:9267121-9 ( 66) AGAGAGATAG 1 chrI-NC_003070:4230078-4 ( 1) AGAGAAAGAT 1 chrV-NC_003076:10455493- ( 72) AGAGAGACAA 1 chrIV-NC_003075:15291520 ( 1) AGAGAGAAAT 1 chrI-NC_003070:25986115- ( 62) AGAGAGATAT 1 chrII-NC_003071:18809186 ( 26) AGAGAAAGAA 1 chrV-NC_003076:13937850- ( 39) AGATAGAGAT 1 chrII-NC_003071:15641842 ( 7) AGAGAAAAAG 1 chrII-NC_003071:14343662 ( 45) AGAGACAGGG 1 chrII-NC_003071:8692383- ( 9) AGATAGAGAA 1 chrV-NC_003076:7385658-7 ( 32) AGAGAGATGT 1 chrI-NC_003070:27484307- ( 21) AGAGAGACCA 1 chrIV-NC_003075:16689638 ( 1) AGAGAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 11.8644 E= 4.5e-002 167 -1150 -1150 -1150 -1150 -1150 243 -1150 167 -1150 -1150 -1150 -1150 -1150 233 -220 167 -1150 -1150 -1150 -60 -241 203 -1150 167 -1150 -1150 -1150 -160 -83 189 -161 114 -83 -84 -161 -86 -1150 148 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 29 E= 4.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.931034 0.068966 1.000000 0.000000 0.000000 0.000000 0.206897 0.034483 0.758621 0.000000 1.000000 0.000000 0.000000 0.000000 0.103448 0.103448 0.689655 0.103448 0.689655 0.103448 0.103448 0.103448 0.172414 0.000000 0.517241 0.310345 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- AGAGA[GA]AGA[GT] -------------------------------------------------------------------------------- Time 273.04 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 9 sites = 21 llr = 215 E-value = 7.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :8::1:a:9 pos.-specific C ::2::::71 probability G a21a:a:3: matrix T ::7:9:::: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * ** Relative 1.5 * * *** Entropy 1.2 ** ****** (14.8 bits) 1.0 ** ****** 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel GATGTGACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- chrV-NC_003076:26286499- 85 3.66e-06 TTATGATTGT GATGTGACA GAGACAC chrV-NC_003076:2985552-2 18 3.66e-06 GTATTGGTTG GATGTGACA GCATTAGGGT chrIV-NC_003075:14841394 65 3.66e-06 ACTGTGTCAG GATGTGACA TATGGGCCGC chrIII-NC_003074:1136463 85 3.66e-06 ATTGAAATTC GATGTGACA TAATTTT chrIII-NC_003074:2058573 62 3.66e-06 TGAAGAGACG GATGTGACA ATAAAAAATT chrV-NC_003076:5420138-5 14 9.49e-06 AAGATAGCTT GATGTGAGA GGTGATGAAA chrV-NC_003076:3318152-3 71 9.49e-06 GCAGGCATGT GATGTGAGA CCATTGGACT chrIV-NC_003075:17002621 56 9.49e-06 AATCCCCTGA GACGTGACA TGTCACACTC chrI-NC_003070:10693165- 4 9.49e-06 TGG GACGTGACA TAATACTAAA chrII-NC_003071:12941131 17 9.49e-06 CAGGGTTGGG GATGTGAGA CAAGACGCGG chrII-NC_003071:10073979 92 9.49e-06 TTTCTGATTC GATGTGAGA chrV-NC_003076:1950972-1 38 1.17e-05 ATCTATAATA GGTGTGACA GTCTAGGGCT chrV-NC_003076:15711862- 57 1.17e-05 TATGTGCATG GGTGTGACA AAATAAAATG chrI-NC_003070:26727705- 79 1.38e-05 TAAACTCAAA GAGGTGACA GCCGTTATTA chrII-NC_003071:18372646 77 1.60e-05 CCCATAATTC GACGTGAGA CATGTGAGTG chrV-NC_003076:6812378-6 48 2.16e-05 CCTACGTGGT GGTGTGAGA GGTCACAGGA chrII-NC_003071:11771581 37 2.16e-05 TTGTCAAGTT GATGTGACC TTTCACAATT chrV-NC_003076:25805087- 42 2.87e-05 GTTCTGATTG GATGAGACA ACGCTCTATT chrIII-NC_003074:2345893 64 3.34e-05 GAAACTCTTG GGCGTGAGA ATTGTAACAA chrIV-NC_003075:15291520 65 3.72e-05 GGGAAAAGAG GAGGTGACC GGGTCAGATT chrI-NC_003070:8298225-8 71 4.85e-05 TTGTCCCCAT GAGGAGACA TCCCCCCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:26286499- 3.7e-06 84_[+7]_7 chrV-NC_003076:2985552-2 3.7e-06 17_[+7]_74 chrIV-NC_003075:14841394 3.7e-06 64_[+7]_27 chrIII-NC_003074:1136463 3.7e-06 84_[+7]_7 chrIII-NC_003074:2058573 3.7e-06 61_[+7]_30 chrV-NC_003076:5420138-5 9.5e-06 13_[+7]_78 chrV-NC_003076:3318152-3 9.5e-06 70_[+7]_21 chrIV-NC_003075:17002621 9.5e-06 55_[+7]_36 chrI-NC_003070:10693165- 9.5e-06 3_[+7]_88 chrII-NC_003071:12941131 9.5e-06 16_[+7]_75 chrII-NC_003071:10073979 9.5e-06 91_[+7] chrV-NC_003076:1950972-1 1.2e-05 37_[+7]_54 chrV-NC_003076:15711862- 1.2e-05 56_[+7]_35 chrI-NC_003070:26727705- 1.4e-05 78_[+7]_13 chrII-NC_003071:18372646 1.6e-05 76_[+7]_15 chrV-NC_003076:6812378-6 2.2e-05 47_[+7]_44 chrII-NC_003071:11771581 2.2e-05 36_[+7]_55 chrV-NC_003076:25805087- 2.9e-05 41_[+7]_50 chrIII-NC_003074:2345893 3.3e-05 63_[+7]_28 chrIV-NC_003075:15291520 3.7e-05 64_[+7]_27 chrI-NC_003070:8298225-8 4.9e-05 70_[+7]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=9 seqs=21 chrV-NC_003076:26286499- ( 85) GATGTGACA 1 chrV-NC_003076:2985552-2 ( 18) GATGTGACA 1 chrIV-NC_003075:14841394 ( 65) GATGTGACA 1 chrIII-NC_003074:1136463 ( 85) GATGTGACA 1 chrIII-NC_003074:2058573 ( 62) GATGTGACA 1 chrV-NC_003076:5420138-5 ( 14) GATGTGAGA 1 chrV-NC_003076:3318152-3 ( 71) GATGTGAGA 1 chrIV-NC_003075:17002621 ( 56) GACGTGACA 1 chrI-NC_003070:10693165- ( 4) GACGTGACA 1 chrII-NC_003071:12941131 ( 17) GATGTGAGA 1 chrII-NC_003071:10073979 ( 92) GATGTGAGA 1 chrV-NC_003076:1950972-1 ( 38) GGTGTGACA 1 chrV-NC_003076:15711862- ( 57) GGTGTGACA 1 chrI-NC_003070:26727705- ( 79) GAGGTGACA 1 chrII-NC_003071:18372646 ( 77) GACGTGAGA 1 chrV-NC_003076:6812378-6 ( 48) GGTGTGAGA 1 chrII-NC_003071:11771581 ( 37) GATGTGACC 1 chrV-NC_003076:25805087- ( 42) GATGAGACA 1 chrIII-NC_003074:2345893 ( 64) GGCGTGAGA 1 chrIV-NC_003075:15291520 ( 65) GAGGTGACC 1 chrI-NC_003070:8298225-8 ( 71) GAGGAGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 46000 bayes= 12.083 E= 7.0e+001 -1104 -1104 243 -1104 137 -1104 4 -1104 -1104 5 -38 108 -1104 -1104 243 -1104 -172 -1104 -1104 152 -1104 -1104 243 -1104 167 -1104 -1104 -1104 -1104 186 84 -1104 153 -95 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 21 E= 7.0e+001 0.000000 0.000000 1.000000 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 0.190476 0.142857 0.666667 0.000000 0.000000 1.000000 0.000000 0.095238 0.000000 0.000000 0.904762 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.904762 0.095238 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- GATGTGA[CG]A -------------------------------------------------------------------------------- Time 313.04 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 10 sites = 6 llr = 80 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A :::a:::7:3 pos.-specific C ::::aa2:a7 probability G :aa:::8::: matrix T a::::::3:: bits 2.4 ** ** * 2.2 ** ** * 2.0 ** ** * 1.7 ******* * Relative 1.5 ******* * Entropy 1.2 ******* ** (19.3 bits) 1.0 ******* ** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel TGGACCGACC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:2234878-2 38 2.30e-07 TAGCTTAATA TGGACCGACC GTATCTTCTT chrI-NC_003070:11067795- 49 2.30e-07 TACGAAGATG TGGACCGACC ATGTGCTTTT chrV-NC_003076:5227549-5 27 4.61e-07 CACGTGGACG TGGACCGTCC ATGAAATATA chrII-NC_003071:18635636 36 4.61e-07 AGCATGTTTA TGGACCGTCC AGGCTCCTCG chrIII-NC_003074:9959827 62 8.53e-07 TCATCATTTA TGGACCGACA ACATTATACC chrV-NC_003076:19308671- 21 2.09e-06 CGACAATGGT TGGACCCACA GGAGAAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:2234878-2 2.3e-07 37_[+8]_53 chrI-NC_003070:11067795- 2.3e-07 48_[+8]_42 chrV-NC_003076:5227549-5 4.6e-07 26_[+8]_64 chrII-NC_003071:18635636 4.6e-07 35_[+8]_55 chrIII-NC_003074:9959827 8.5e-07 61_[+8]_29 chrV-NC_003076:19308671- 2.1e-06 20_[+8]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=10 seqs=6 chrV-NC_003076:2234878-2 ( 38) TGGACCGACC 1 chrI-NC_003070:11067795- ( 49) TGGACCGACC 1 chrV-NC_003076:5227549-5 ( 27) TGGACCGTCC 1 chrII-NC_003071:18635636 ( 36) TGGACCGTCC 1 chrIII-NC_003074:9959827 ( 62) TGGACCGACA 1 chrV-NC_003076:19308671- ( 21) TGGACCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 13.3359 E= 3.4e+003 -923 -923 -923 166 -923 -923 243 -923 -923 -923 243 -923 167 -923 -923 -923 -923 244 -923 -923 -923 244 -923 -923 -923 -14 216 -923 109 -923 -923 8 -923 244 -923 -923 9 185 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 6 E= 3.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- TGGACCG[AT]C[CA] -------------------------------------------------------------------------------- Time 352.99 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 8 sites = 8 llr = 92 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::9:::: probability G aa:1:a:a matrix T ::::a:a: bits 2.4 ** * * 2.2 ** * * 2.0 ** * * * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (16.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGACTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV-NC_003076:26723061- 23 6.91e-06 TTTTACACTT GGACTGTG ACTTATGGCA chrIV-NC_003075:14841394 53 6.91e-06 ATGAGGCAGT GGACTGTG TCAGGATGTG chrI-NC_003070:27175535- 81 6.91e-06 AGAGCGCTTT GGACTGTG TTATTGGGAA chrI-NC_003070:29649886- 76 6.91e-06 GGAGTAACGA GGACTGTG TTGTGTGTAT chrII-NC_003071:17811225 25 6.91e-06 TCTTAAGCCT GGACTGTG AGTCTGAAGA chrII-NC_003071:19050821 21 6.91e-06 AAACAAATAA GGACTGTG ATATAAAGTT chrII-NC_003071:9577588- 21 6.91e-06 TGTAGTGTAG GGACTGTG TAGAAAGAAA chrI-NC_003070:20187010- 49 1.39e-05 ACCATTTATA GGAGTGTG ACGATTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:26723061- 6.9e-06 22_[+9]_70 chrIV-NC_003075:14841394 6.9e-06 52_[+9]_40 chrI-NC_003070:27175535- 6.9e-06 80_[+9]_12 chrI-NC_003070:29649886- 6.9e-06 75_[+9]_17 chrII-NC_003071:17811225 6.9e-06 24_[+9]_68 chrII-NC_003071:19050821 6.9e-06 20_[+9]_72 chrII-NC_003071:9577588- 6.9e-06 20_[+9]_72 chrI-NC_003070:20187010- 1.4e-05 48_[+9]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=8 seqs=8 chrV-NC_003076:26723061- ( 23) GGACTGTG 1 chrIV-NC_003075:14841394 ( 53) GGACTGTG 1 chrI-NC_003070:27175535- ( 81) GGACTGTG 1 chrI-NC_003070:29649886- ( 76) GGACTGTG 1 chrII-NC_003071:17811225 ( 25) GGACTGTG 1 chrII-NC_003071:19050821 ( 21) GGACTGTG 1 chrII-NC_003071:9577588- ( 21) GGACTGTG 1 chrI-NC_003070:20187010- ( 49) GGAGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 46500 bayes= 12.5047 E= 2.6e+004 -965 -965 243 -965 -965 -965 243 -965 167 -965 -965 -965 -965 225 -57 -965 -965 -965 -965 166 -965 -965 243 -965 -965 -965 -965 166 -965 -965 243 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- GGACTGTG -------------------------------------------------------------------------------- Time 393.47 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 10 sites = 2 llr = 32 E-value = 3.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :::a:::::: pos.-specific C aaa:::::aa probability G :::::aaa:: matrix T ::::a::::: bits 2.4 *** ***** 2.2 *** ***** 2.0 *** ***** 1.7 ********** Relative 1.5 ********** Entropy 1.2 ********** (22.8 bits) 1.0 ********** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CCCATGGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:6812378-6 88 1.35e-07 ATAGGCATAT CCCATGGGCC CCG chrV-NC_003076:5306644-5 9 1.35e-07 TGCAGCGG CCCATGGGCC TCTTTAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:6812378-6 1.3e-07 87_[+10]_3 chrV-NC_003076:5306644-5 1.3e-07 8_[+10]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=10 seqs=2 chrV-NC_003076:6812378-6 ( 88) CCCATGGGCC 1 chrV-NC_003076:5306644-5 ( 9) CCCATGGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 45500 bayes= 14.4735 E= 3.3e+004 -765 244 -765 -765 -765 244 -765 -765 -765 244 -765 -765 167 -765 -765 -765 -765 -765 -765 166 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 244 -765 -765 -765 244 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 2 E= 3.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- CCCATGGGCC -------------------------------------------------------------------------------- Time 433.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII-NC_003074:7211454 1.47e-02 57_[+6(6.80e-07)]_33 chrIII-NC_003074:2058573 2.41e-02 61_[+7(3.66e-06)]_30 chrIII-NC_003074:1315526 6.16e-01 100 chrIII-NC_003074:1797331 1.01e-01 100 chrIII-NC_003074:2114486 6.86e-01 100 chrIII-NC_003074:5121329 1.09e-03 19_[+4(3.15e-05)]_14_[+3(1.05e-06)]_47 chrIII-NC_003074:2012117 3.40e-04 1_[+6(1.83e-06)]_37_[+1(8.01e-06)]_42 chrIII-NC_003074:4121915 1.71e-01 100 chrIII-NC_003074:4608315 1.51e-03 [+6(6.80e-07)]_[+6(6.80e-07)]_[+6(6.80e-07)]_[+6(1.83e-06)]_24_[+6(3.33e-05)]_26 chrIII-NC_003074:467796- 4.54e-01 54_[+3(5.40e-05)]_36 chrIII-NC_003074:1880581 2.98e-02 78_[+6(8.41e-05)]_12 chrIII-NC_003074:1803821 5.31e-02 47_[+5(1.08e-05)]_45 chrIII-NC_003074:2232386 6.60e-01 100 chrIII-NC_003074:2328830 1.08e-02 100 chrIII-NC_003074:2342278 3.65e-05 10_[+5(3.98e-06)]_82 chrIII-NC_003074:4829243 3.77e-01 100 chrIII-NC_003074:2274117 2.81e-01 100 chrIII-NC_003074:1866001 9.30e-02 100 chrIII-NC_003074:2345893 2.26e-03 63_[+7(3.34e-05)]_28 chrIII-NC_003074:2293953 8.51e-02 46_[+2(5.54e-05)]_44 chrIII-NC_003074:1960453 1.54e-01 100 chrIII-NC_003074:3098089 2.63e-03 9_[+6(5.60e-06)]_18_[+7(7.82e-05)]_54 chrIII-NC_003074:1631851 6.22e-01 100 chrIII-NC_003074:5920277 2.97e-01 100 chrIII-NC_003074:1216748 2.59e-02 8_[+3(2.00e-05)]_82 chrIII-NC_003074:5109714 3.08e-01 100 chrIII-NC_003074:2114160 9.37e-01 100 chrIII-NC_003074:1847014 1.66e-02 39_[+4(3.69e-05)]_27_[+4(3.28e-05)]_14 chrIII-NC_003074:1880987 3.40e-03 29_[+6(6.80e-07)]_61 chrIII-NC_003074:6515628 6.93e-01 100 chrIII-NC_003074:1912119 1.98e-02 47_[+1(4.91e-06)]_43 chrIII-NC_003074:3366520 2.05e-02 77_[+4(2.39e-05)]_13 chrIII-NC_003074:2267038 4.79e-01 100 chrIII-NC_003074:8244858 9.96e-01 100 chrIII-NC_003074:2123356 7.71e-02 3_[+1(6.84e-05)]_38_[+4(1.74e-05)]_39 chrIII-NC_003074:5247202 2.63e-01 57_[+2(1.80e-05)]_33 chrIII-NC_003074:2058747 1.98e-01 56_[+3(4.43e-05)]_34 chrIII-NC_003074:2879146 7.14e-01 100 chrIII-NC_003074:9812854 1.37e-02 16_[+2(2.45e-05)]_74 chrIII-NC_003074:2336097 9.67e-01 100 chrIII-NC_003074:7507439 5.74e-03 1_[+3(4.43e-05)]_[+2(1.12e-05)]_79 chrIII-NC_003074:5047285 3.36e-05 26_[+3(5.40e-05)]_29_[+2(9.47e-06)]_11_[+1(3.08e-06)]_4 chrIII-NC_003074:2048548 6.96e-02 68_[+9(5.89e-05)]_24 chrIII-NC_003074:1016306 1.61e-02 40_[+2(1.80e-05)]_50 chrIII-NC_003074:2148925 9.80e-01 100 chrIII-NC_003074:5483214 7.17e-01 100 chrIII-NC_003074:2137198 1.12e-01 84_[+2(9.04e-05)]_6 chrIII-NC_003074:2232813 4.00e-03 6_[+3(2.27e-05)]_37_[+2(7.93e-05)]_13_[+10(2.68e-05)]_14 chrIII-NC_003074:6158039 1.52e-01 100 chrIII-NC_003074:2073934 5.11e-02 100 chrIII-NC_003074:5639174 6.81e-01 100 chrIII-NC_003074:2274058 6.53e-01 100 chrIII-NC_003074:4161788 4.13e-02 58_[+6(5.60e-06)]_32 chrIII-NC_003074:2314802 1.75e-03 9_[+4(1.12e-05)]_10_[+1(7.62e-05)]_61 chrIII-NC_003074:8325713 5.98e-01 100 chrIII-NC_003074:2058364 7.42e-04 13_[+7(4.85e-05)]_19_[+4(2.65e-05)]_49 chrIII-NC_003074:2263424 5.78e-02 32_[+3(4.43e-05)]_44_[+2(6.45e-05)]_4 chrIII-NC_003074:2315534 1.39e-02 75_[+2(2.91e-06)]_15 chrIII-NC_003074:9969381 2.12e-01 100 chrIII-NC_003074:2173210 1.85e-01 14_[+2(1.39e-05)]_76 chrIII-NC_003074:2295427 7.90e-01 100 chrIII-NC_003074:8238773 2.08e-04 27_[+7(4.30e-05)]_9_[+2(5.20e-05)]_23_[+3(5.33e-06)]_12 chrIII-NC_003074:2006941 3.98e-01 100 chrIII-NC_003074:1916825 1.37e-02 84_[+1(1.63e-05)]_6 chrIII-NC_003074:1824618 4.10e-01 100 chrIII-NC_003074:4606069 5.91e-02 67_[+2(1.39e-05)]_23 chrIII-NC_003074:4388456 3.99e-01 63_[+3(3.24e-05)]_3_[+3(8.08e-05)]_14 chrIII-NC_003074:5222127 2.20e-01 41_[+3(2.27e-05)]_49 chrIII-NC_003074:6780440 6.08e-02 100 chrIII-NC_003074:9959827 1.46e-03 61_[+8(8.53e-07)]_11_[+3(3.24e-05)]_8 chrIII-NC_003074:5293159 1.45e-02 42_[+2(7.36e-05)]_6_[+3(6.91e-05)]_32 chrIII-NC_003074:2155955 8.17e-01 100 chrIII-NC_003074:1373643 1.27e-03 29_[+3(2.00e-05)]_2_[+2(1.80e-05)]_9_[+3(2.19e-06)]_30 chrIII-NC_003074:4402880 8.22e-01 100 chrIII-NC_003074:1136463 1.14e-02 49_[+4(9.45e-06)]_25_[+7(3.66e-06)]_7 chrIII-NC_003074:5236784 1.77e-02 48_[+4(4.38e-05)]_42 chrIII-NC_003074:5561291 6.06e-03 14_[+4(1.74e-05)]_62_[+2(9.47e-06)]_4 chrIII-NC_003074:4140590 9.42e-02 100 chrIII-NC_003074:4732994 1.12e-03 38_[+4(1.13e-06)]_52 chrII-NC_003071:383323-3 3.59e-02 53_[+4(1.13e-06)]_37 chrII-NC_003071:507621-5 3.46e-01 100 chrII-NC_003071:893513-8 8.33e-03 78_[+6(6.80e-07)]_12 chrII-NC_003071:519691-5 1.81e-03 3_[+6(5.60e-06)]_13_[+4(4.64e-05)]_38_[+1(6.84e-05)]_16 chrII-NC_003071:14224178 2.85e-01 42_[+4(2.39e-05)]_48 chrII-NC_003071:17819849 8.66e-05 1_[+1(3.08e-06)]_40_[+3(5.40e-05)]_39 chrII-NC_003071:9580218- 2.29e-01 8_[+3(6.65e-07)]_82 chrII-NC_003071:13276540 3.51e-02 14_[+4(7.72e-05)]_76 chrII-NC_003071:18690235 1.28e-02 64_[+7(7.82e-05)]_27 chrII-NC_003071:999352-9 2.35e-02 37_[+3(6.65e-07)]_3_[+3(6.01e-05)]_40 chrII-NC_003071:15206954 6.91e-02 69_[+1(1.63e-05)]_21 chrII-NC_003071:17752015 2.58e-01 48_[+4(8.46e-05)]_42 chrII-NC_003071:14735573 5.63e-03 64_[+1(1.63e-05)]_[+4(1.12e-05)]_16 chrII-NC_003071:11771581 2.84e-03 21_[+3(1.47e-05)]_5_[+7(2.16e-05)]_55 chrII-NC_003071:18811685 1.14e-03 38_[+2(9.47e-06)]_52 chrII-NC_003071:16504450 3.25e-03 52_[+1(7.91e-05)]_38 chrII-NC_003071:18609160 1.86e-02 100 chrII-NC_003071:14733330 9.84e-01 100 chrII-NC_003071:17791525 2.36e-02 44_[+1(6.84e-05)]_46 chrII-NC_003071:18372646 1.21e-04 37_[+9(5.89e-05)]_31_[+7(1.60e-05)]_15 chrII-NC_003071:9577588- 2.41e-05 [+6(6.29e-06)]_10_[+9(6.91e-06)]_1_[+1(8.82e-05)]_3_[+4(9.45e-06)]_48 chrII-NC_003071:18636884 7.57e-01 100 chrII-NC_003071:19050821 2.44e-04 20_[+9(6.91e-06)]_37_[+1(3.08e-06)]_25 chrII-NC_003071:18414199 5.57e-04 3_[+5(6.12e-05)]_28_[+2(2.45e-05)]_16_[+3(2.73e-05)]_25 chrII-NC_003071:14485986 6.42e-01 100 chrII-NC_003071:14209326 6.27e-01 100 chrII-NC_003071:16127680 4.94e-01 100 chrII-NC_003071:15692135 2.02e-03 30_[+6(1.30e-05)]_40_[+4(9.26e-05)]_10 chrII-NC_003071:13275324 1.02e-02 100 chrII-NC_003071:7940353- 2.88e-02 100 chrII-NC_003071:1136691- 4.30e-01 100 chrII-NC_003071:9523120- 9.81e-03 39_[+3(5.40e-05)]_51 chrII-NC_003071:10073979 5.17e-02 91_[+7(9.49e-06)] chrII-NC_003071:14984517 2.62e-01 53_[+8(4.08e-05)]_37 chrII-NC_003071:17620274 1.34e-02 36_[+2(6.75e-07)]_54 chrII-NC_003071:17446381 6.11e-02 50_[+2(5.54e-05)]_40 chrII-NC_003071:17809790 2.26e-02 14_[+5(1.08e-05)]_78 chrII-NC_003071:8692383- 1.49e-04 8_[+6(5.73e-05)]_29_[+4(2.84e-06)]_43 chrII-NC_003071:9037825- 3.55e-01 100 chrII-NC_003071:17811225 4.58e-02 24_[+9(6.91e-06)]_68 chrII-NC_003071:8057123- 2.63e-01 30_[+3(1.13e-05)]_60 chrII-NC_003071:14331382 1.33e-02 18_[+2(9.47e-06)]_48_[+3(8.08e-05)]_[+2(9.82e-05)]_4 chrII-NC_003071:14343662 1.95e-03 44_[+6(5.23e-05)]_12_[+1(8.01e-06)]_24 chrII-NC_003071:18423064 2.63e-02 27_[+1(3.08e-06)]_63 chrII-NC_003071:15690335 5.93e-02 100 chrII-NC_003071:15499324 3.81e-01 100 chrII-NC_003071:18813108 1.78e-01 62_[+2(4.67e-05)]_28 chrII-NC_003071:17743083 3.73e-03 5_[+3(8.08e-05)]_43_[+4(4.38e-05)]_32 chrII-NC_003071:18114692 3.55e-01 100 chrII-NC_003071:16641474 3.54e-01 47_[+3(8.08e-05)]_43 chrII-NC_003071:18809186 1.38e-02 25_[+6(2.65e-05)]_65 chrII-NC_003071:12941131 6.57e-05 16_[+7(9.49e-06)]_44_[+4(2.00e-05)]_1_[+6(5.02e-05)]_10 chrII-NC_003071:15784362 1.76e-02 34_[+3(1.05e-06)]_56 chrII-NC_003071:13005722 7.08e-01 100 chrII-NC_003071:16559057 7.75e-02 67_[+2(1.39e-05)]_23 chrII-NC_003071:15624929 7.55e-03 19_[+2(7.93e-05)]_71 chrII-NC_003071:14339796 9.03e-01 100 chrII-NC_003071:19071014 6.32e-02 100 chrII-NC_003071:18635636 6.29e-05 35_[+8(4.61e-07)]_29_[+3(1.47e-05)]_16 chrII-NC_003071:13006678 3.75e-01 100 chrII-NC_003071:15590906 2.83e-01 100 chrII-NC_003071:18811088 6.35e-03 44_[+2(7.93e-05)]_19_[+4(4.75e-06)]_17 chrII-NC_003071:12683085 6.72e-02 33_[+1(1.63e-05)]_57 chrII-NC_003071:436660-4 5.35e-02 86_[+3(6.65e-07)]_4 chrII-NC_003071:14956344 2.47e-02 14_[+4(1.13e-06)]_76 chrII-NC_003071:10191605 1.48e-04 34_[+2(4.09e-05)]_[+3(8.62e-05)]_26_[+4(5.55e-05)]_10 chrII-NC_003071:16506959 7.71e-01 100 chrII-NC_003071:16221715 7.68e-03 41_[+5(3.89e-05)]_9_[+3(2.86e-06)]_32 chrII-NC_003071:15100000 5.61e-02 100 chrII-NC_003071:15009644 1.51e-01 100 chrII-NC_003071:19299005 1.89e-04 25_[+8(5.74e-05)]_6_[+2(1.39e-05)]_5_[+5(9.02e-05)]_3_[+5(9.02e-05)]_25 chrII-NC_003071:15641842 1.73e-03 6_[+6(4.79e-05)]_6_[+5(2.55e-05)]_70 chrII-NC_003071:19198253 2.16e-02 42_[+2(2.51e-06)]_48 chrI-NC_003070:29216817- 6.81e-01 56_[+3(8.08e-05)]_34 chrI-NC_003070:8075697-8 3.12e-01 100 chrI-NC_003070:26952110- 8.72e-01 100 chrI-NC_003070:25681122- 8.50e-01 100 chrI-NC_003070:27224204- 2.11e-02 75_[+4(2.00e-05)]_15 chrI-NC_003070:7930468-7 9.57e-05 12_[+2(9.47e-06)]_17_[+1(3.08e-06)]_51 chrI-NC_003070:27977207- 4.95e-01 100 chrI-NC_003070:29649886- 5.25e-04 75_[+9(6.91e-06)]_17 chrI-NC_003070:6459719-6 2.83e-02 49_[+1(8.01e-06)]_16_[+4(9.26e-05)]_15 chrI-NC_003070:9270027-9 3.34e-04 70_[+2(5.23e-06)]_20 chrI-NC_003070:2990781-2 1.01e-03 35_[+4(2.39e-05)]_9_[+1(1.63e-05)]_36 chrI-NC_003070:9264433-9 7.71e-02 100 chrI-NC_003070:4904078-4 1.00e-01 65_[+4(3.62e-05)]_25 chrI-NC_003070:20187010- 1.55e-04 48_[+9(1.39e-05)]_12_[+6(1.83e-06)]_22 chrI-NC_003070:1845343-1 3.92e-01 100 chrI-NC_003070:27484307- 4.79e-01 20_[+6(6.87e-05)]_70 chrI-NC_003070:4706342-4 5.49e-01 100 chrI-NC_003070:28189228- 6.37e-01 100 chrI-NC_003070:9577535-9 5.20e-01 100 chrI-NC_003070:10365147- 2.05e-03 100 chrI-NC_003070:4600590-4 4.53e-02 8_[+1(4.32e-05)]_71_[+1(3.08e-06)]_1 chrI-NC_003070:8298225-8 1.11e-02 70_[+7(4.85e-05)]_4_[+10(2.68e-05)]_7 chrI-NC_003070:9696469-9 3.83e-02 56_[+4(3.82e-05)]_10_[+5(4.57e-05)]_16 chrI-NC_003070:28183883- 1.83e-02 58_[+1(1.63e-05)]_32 chrI-NC_003070:1713963-1 9.77e-01 100 chrI-NC_003070:26100213- 1.99e-01 100 chrI-NC_003070:20954156- 1.80e-01 100 chrI-NC_003070:26581166- 1.02e-01 100 chrI-NC_003070:25319734- 9.23e-02 100 chrI-NC_003070:10693165- 4.58e-04 3_[+7(9.49e-06)]_88 chrI-NC_003070:8839847-8 7.40e-02 24_[+5(5.72e-05)]_68 chrI-NC_003070:11621930- 4.49e-01 100 chrI-NC_003070:19848591- 5.35e-06 27_[+6(2.63e-06)]_31_[+2(5.54e-05)]_22 chrI-NC_003070:1400775-1 2.86e-01 12_[+4(9.26e-05)]_78 chrI-NC_003070:24034324- 2.42e-01 100 chrI-NC_003070:20762937- 1.28e-01 100 chrI-NC_003070:20566081- 3.72e-01 100 chrI-NC_003070:4548708-4 5.00e-02 100 chrI-NC_003070:26516903- 7.38e-01 100 chrI-NC_003070:11033851- 7.06e-02 100 chrI-NC_003070:9848798-9 6.26e-01 100 chrI-NC_003070:10802081- 2.80e-02 79_[+4(7.72e-05)]_11 chrI-NC_003070:28673898- 1.68e-01 71_[+4(3.15e-05)]_19 chrI-NC_003070:3059248-3 2.22e-01 100 chrI-NC_003070:23075613- 1.36e-03 85_[+4(9.45e-06)]_5 chrI-NC_003070:9990611-9 5.50e-01 100 chrI-NC_003070:8719400-8 4.80e-02 57_[+5(3.89e-05)]_35 chrI-NC_003070:10353987- 6.59e-03 85_[+5(3.89e-05)]_7 chrI-NC_003070:5086105-5 4.87e-03 100 chrI-NC_003070:20956673- 5.51e-03 77_[+5(1.76e-05)]_15 chrI-NC_003070:6335906-6 2.12e-02 50_[+4(4.75e-06)]_40 chrI-NC_003070:7142968-7 4.43e-02 38_[+2(2.07e-05)]_52 chrI-NC_003070:7765843-7 1.41e-01 12_[+2(6.45e-05)]_78 chrI-NC_003070:6174575-6 1.22e-03 3_[+5(1.76e-05)]_7_[+2(1.58e-05)]_72 chrI-NC_003070:17506694- 3.53e-02 29_[+4(2.39e-05)]_61 chrI-NC_003070:4654775-4 8.42e-01 100 chrI-NC_003070:9778028-9 4.08e-02 44_[+1(4.91e-06)]_46 chrI-NC_003070:25228930- 3.83e-03 68_[+2(7.36e-05)]_22 chrI-NC_003070:28358363- 7.36e-01 100 chrI-NC_003070:27175535- 2.09e-04 64_[+6(6.80e-07)]_6_[+9(6.91e-06)]_12 chrI-NC_003070:6400332-6 2.41e-01 100 chrI-NC_003070:365449-36 2.36e-01 100 chrI-NC_003070:11067795- 5.48e-05 48_[+8(2.30e-07)]_42 chrI-NC_003070:10978094- 1.14e-01 100 chrI-NC_003070:29744071- 6.35e-01 100 chrI-NC_003070:25046709- 1.29e-01 [+4(4.38e-05)]_90 chrI-NC_003070:1469246-1 3.92e-02 20_[+5(7.47e-05)]_72 chrI-NC_003070:21207023- 5.89e-04 41_[+5(3.89e-05)]_29_[+5(1.08e-05)]_14 chrI-NC_003070:9950783-9 1.11e-02 10_[+1(6.84e-05)]_80 chrI-NC_003070:28461394- 1.65e-02 100 chrI-NC_003070:6837288-6 8.36e-01 100 chrI-NC_003070:4721458-4 1.42e-01 100 chrI-NC_003070:813123-81 8.03e-02 34_[+7(8.41e-05)]_57 chrI-NC_003070:3101291-3 9.55e-01 100 chrI-NC_003070:4904669-4 1.11e-02 17_[+1(6.84e-05)]_47_[+2(5.23e-06)]_16 chrI-NC_003070:26011665- 3.60e-04 50_[+4(7.66e-06)]_40 chrI-NC_003070:7461930-7 1.58e-01 46_[+1(1.63e-05)]_44 chrI-NC_003070:20564017- 1.09e-01 100 chrI-NC_003070:8595048-8 3.29e-02 67_[+4(1.35e-05)]_23 chrI-NC_003070:9589553-9 2.46e-02 83_[+3(2.19e-06)]_7 chrI-NC_003070:2580938-2 1.08e-01 100 chrI-NC_003070:7663867-7 3.84e-01 100 chrI-NC_003070:28294287- 5.39e-01 100 chrI-NC_003070:8717843-8 9.89e-03 80_[+3(6.65e-07)]_10 chrI-NC_003070:8976292-8 5.46e-01 100 chrI-NC_003070:10795050- 2.95e-01 100 chrI-NC_003070:26727705- 2.03e-02 78_[+7(1.38e-05)]_13 chrI-NC_003070:553848-55 2.31e-02 58_[+1(1.63e-05)]_32 chrI-NC_003070:28313380- 1.85e-01 54_[+5(5.72e-05)]_38 chrI-NC_003070:27298012- 7.85e-01 100 chrI-NC_003070:7341602-7 6.40e-03 45_[+2(9.47e-06)]_45 chrI-NC_003070:2120819-2 8.14e-04 89_[+3(5.40e-05)]_1 chrI-NC_003070:18690429- 1.97e-02 100 chrI-NC_003070:13228460- 3.78e-03 12_[+3(4.66e-06)]_23_[+4(4.64e-05)]_45 chrI-NC_003070:25409323- 1.34e-01 51_[+2(6.45e-05)]_39 chrI-NC_003070:26059435- 1.32e-01 25_[+2(2.51e-06)]_65 chrI-NC_003070:27363797- 7.09e-02 33_[+1(1.63e-05)]_57 chrI-NC_003070:983744-98 4.62e-01 100 chrI-NC_003070:28236998- 1.99e-02 17_[+3(8.08e-05)]_73 chrI-NC_003070:9571120-9 7.93e-01 100 chrI-NC_003070:9307641-9 7.95e-02 18_[+4(6.99e-05)]_72 chrI-NC_003070:6916711-6 1.63e-04 69_[+2(6.75e-07)]_21 chrI-NC_003070:27713517- 8.86e-02 100 chrI-NC_003070:11630779- 5.62e-03 29_[+6(2.65e-05)]_51_[+3(4.43e-05)] chrI-NC_003070:29755660- 2.88e-02 100 chrI-NC_003070:431263-43 5.39e-01 100 chrI-NC_003070:6579449-6 6.03e-03 74_[+3(6.65e-07)]_6_[+3(5.40e-05)] chrI-NC_003070:2626158-2 1.30e-01 16_[+1(2.15e-05)]_74 chrI-NC_003070:21192338- 5.48e-03 33_[+1(3.08e-06)]_57 chrI-NC_003070:8598785-8 2.28e-05 85_[+4(5.87e-06)]_5 chrI-NC_003070:17424557- 6.46e-01 100 chrI-NC_003070:25391314- 1.92e-01 52_[+2(2.51e-06)]_38 chrI-NC_003070:27498072- 1.30e-03 45_[+2(2.95e-05)]_10_[+5(3.89e-05)]_16_[+2(7.93e-05)]_1 chrI-NC_003070:26476516- 2.74e-01 100 chrI-NC_003070:25226373- 1.87e-01 72_[+1(7.62e-05)]_18 chrI-NC_003070:27292918- 3.62e-02 100 chrI-NC_003070:23061511- 1.14e-02 100 chrI-NC_003070:2621715-2 1.65e-01 100 chrI-NC_003070:5514017-5 4.42e-02 100 chrI-NC_003070:6844872-6 7.18e-01 100 chrI-NC_003070:27596253- 3.88e-03 2_[+5(1.08e-05)]_69_[+2(4.09e-05)]_11 chrI-NC_003070:9267121-9 1.59e-01 65_[+6(9.95e-06)]_25 chrI-NC_003070:8305313-8 1.20e-01 43_[+2(9.04e-05)]_47 chrI-NC_003070:6683053-6 6.96e-01 100 chrI-NC_003070:8983912-8 3.75e-01 100 chrI-NC_003070:25986115- 5.30e-02 61_[+6(2.65e-05)]_29 chrI-NC_003070:4230078-4 1.29e-02 [+6(1.30e-05)]_90 chrI-NC_003070:28123009- 5.57e-01 100 chrI-NC_003070:4231455-4 3.65e-01 100 chrI-NC_003070:5851740-5 5.98e-01 100 chrI-NC_003070:28378932- 2.67e-01 24_[+4(5.33e-05)]_66 chrI-NC_003070:1188247-1 9.30e-04 33_[+2(1.58e-05)]_57 chrI-NC_003070:18360496- 1.13e-01 100 chrI-NC_003070:3168218-3 3.04e-02 100 chrI-NC_003070:28558342- 1.48e-01 100 chrI-NC_003070:25774540- 5.58e-01 100 chrI-NC_003070:20109422- 7.56e-01 100 chrI-NC_003070:2395072-2 7.34e-01 82_[+4(5.33e-05)]_8 chrIV-NC_003075:17319854 2.58e-02 100 chrIV-NC_003075:9257678- 3.88e-05 15_[+4(4.75e-06)]_[+1(6.84e-05)]_65 chrIV-NC_003075:15919075 5.84e-01 100 chrIV-NC_003075:13016189 4.66e-03 100 chrIV-NC_003075:8435508- 2.12e-02 100 chrIV-NC_003075:14913036 7.81e-01 100 chrIV-NC_003075:17397910 3.19e-04 [+6(2.65e-05)]_10_[+6(3.78e-06)]_70 chrIV-NC_003075:11995727 5.40e-01 100 chrIV-NC_003075:16271092 3.25e-01 100 chrIV-NC_003075:17432048 8.59e-01 100 chrIV-NC_003075:14372903 9.55e-02 76_[+1(6.84e-05)]_14 chrIV-NC_003075:10386496 1.05e-02 38_[+1(6.84e-05)]_52 chrIV-NC_003075:12357392 6.18e-02 79_[+1(4.32e-05)]_11 chrIV-NC_003075:8374385- 7.76e-01 100 chrIV-NC_003075:15817454 6.22e-01 100 chrIV-NC_003075:16980446 3.88e-02 62_[+1(3.08e-06)]_28 chrIV-NC_003075:13013992 1.43e-04 34_[+5(3.98e-06)]_58 chrIV-NC_003075:18465939 9.69e-01 100 chrIV-NC_003075:16689014 4.94e-01 64_[+4(3.15e-05)]_26 chrIV-NC_003075:14902725 2.33e-01 100 chrIV-NC_003075:17730731 2.14e-02 81_[+7(6.03e-05)]_10 chrIV-NC_003075:13854253 2.20e-03 80_[+1(5.14e-05)]_10 chrIV-NC_003075:15317404 2.53e-01 100 chrIV-NC_003075:5157388- 2.07e-01 100 chrIV-NC_003075:17150919 3.71e-01 100 chrIV-NC_003075:15054403 7.01e-02 100 chrIV-NC_003075:8452707- 3.16e-01 100 chrIV-NC_003075:17395813 2.02e-03 1_[+1(8.01e-06)]_89 chrIV-NC_003075:9319717- 1.09e-01 37_[+2(1.02e-05)]_53 chrIV-NC_003075:10381187 1.23e-02 100 chrIV-NC_003075:15205277 1.90e-03 59_[+4(8.32e-06)]_18_[+5(2.55e-05)]_5 chrIV-NC_003075:5155452- 6.75e-01 80_[+1(6.84e-05)]_10 chrIV-NC_003075:15231291 2.33e-03 29_[+4(7.72e-05)]_61 chrIV-NC_003075:12027865 6.76e-01 100 chrIV-NC_003075:8445049- 1.92e-01 100 chrIV-NC_003075:17979925 2.19e-02 35_[+1(1.63e-05)]_55 chrIV-NC_003075:11604857 5.36e-02 34_[+1(1.63e-05)]_20_[+1(8.82e-05)]_26 chrIV-NC_003075:12043865 5.19e-02 42_[+4(6.54e-06)]_48 chrIV-NC_003075:13987314 8.62e-03 45_[+9(5.89e-05)]_47 chrIV-NC_003075:8419613- 9.71e-02 30_[+1(3.08e-06)]_60 chrIV-NC_003075:18055544 5.49e-01 100 chrIV-NC_003075:14196767 1.13e-01 100 chrIV-NC_003075:18318575 2.74e-01 100 chrIV-NC_003075:18472262 1.82e-01 100 chrIV-NC_003075:59143-59 6.67e-01 100 chrIV-NC_003075:15110755 2.75e-01 100 chrIV-NC_003075:11865408 2.68e-01 100 chrIV-NC_003075:17398893 7.21e-03 73_[+3(6.91e-05)]_17 chrIV-NC_003075:14815766 5.52e-01 100 chrIV-NC_003075:630556-6 4.34e-02 100 chrIV-NC_003075:14325477 9.40e-03 26_[+2(2.51e-06)]_64 chrIV-NC_003075:7868931- 1.48e-01 1_[+5(9.02e-05)]_91 chrIV-NC_003075:18080307 3.02e-01 100 chrIV-NC_003075:17002621 1.25e-03 55_[+7(9.49e-06)]_36 chrIV-NC_003075:15918159 2.77e-03 100 chrIV-NC_003075:13985181 6.57e-01 100 chrIV-NC_003075:17006711 7.66e-03 14_[+2(9.47e-06)]_39_[+2(6.75e-07)]_27 chrIV-NC_003075:17780863 8.86e-04 4_[+6(6.80e-07)]_[+6(5.60e-06)]_2_[+6(6.29e-06)]_64 chrIV-NC_003075:1157171- 2.10e-01 85_[+2(6.45e-05)]_5 chrIV-NC_003075:12941021 5.40e-02 100 chrIV-NC_003075:15397160 8.73e-01 100 chrIV-NC_003075:5738986- 4.07e-01 100 chrIV-NC_003075:14359075 1.47e-01 43_[+1(6.84e-05)]_47 chrIV-NC_003075:15291520 1.89e-02 [+6(2.65e-05)]_14_[+6(9.57e-05)]_30_[+7(3.72e-05)]_27 chrIV-NC_003075:14841394 3.97e-06 52_[+9(6.91e-06)]_4_[+7(3.66e-06)]_27 chrIV-NC_003075:16689638 3.95e-04 [+6(8.41e-05)]_2_[+6(2.65e-05)]_78 chrIV-NC_003075:14207916 3.00e-02 19_[+3(6.65e-07)]_52_[+2(5.20e-05)]_9 chrIV-NC_003075:12084455 4.31e-01 100 chrIV-NC_003075:17585335 6.85e-02 100 chrIV-NC_003075:200809-2 4.08e-01 100 chrIV-NC_003075:1495507- 7.00e-02 54_[+5(1.76e-05)]_38 chrM:272146-272246 1.03e-02 45_[+1(4.91e-06)]_45 chrV-NC_003076:25505626- 6.96e-01 100 chrV-NC_003076:959036-95 5.30e-01 100 chrV-NC_003076:3511366-3 9.63e-01 100 chrV-NC_003076:19899344- 9.88e-01 100 chrV-NC_003076:1826915-1 8.65e-01 100 chrV-NC_003076:2839193-2 6.32e-01 100 chrV-NC_003076:21045204- 5.88e-04 19_[+2(9.04e-05)]_60_[+6(6.29e-06)]_1 chrV-NC_003076:23670310- 3.81e-02 35_[+2(5.20e-05)]_55 chrV-NC_003076:2937300-2 9.56e-01 100 chrV-NC_003076:21900890- 1.19e-02 32_[+5(3.89e-05)]_48_[+3(9.13e-05)]_2 chrV-NC_003076:26562477- 5.33e-01 100 chrV-NC_003076:20898876- 6.05e-01 100 chrV-NC_003076:19112027- 8.27e-01 100 chrV-NC_003076:9133324-9 1.42e-04 9_[+5(1.08e-05)]_35_[+1(8.01e-06)]_38 chrV-NC_003076:6381195-6 5.27e-01 100 chrV-NC_003076:2939811-2 3.46e-01 100 chrV-NC_003076:4221096-4 2.02e-01 100 chrV-NC_003076:26663110- 3.34e-02 72_[+5(9.02e-05)]_20 chrV-NC_003076:19308671- 9.16e-03 20_[+8(2.09e-06)]_70 chrV-NC_003076:39082-391 2.18e-01 100 chrV-NC_003076:23314284- 2.43e-02 69_[+4(1.35e-05)]_21 chrV-NC_003076:23785207- 1.17e-03 81_[+1(8.01e-06)]_9 chrV-NC_003076:26723061- 2.06e-02 22_[+9(6.91e-06)]_70 chrV-NC_003076:25504498- 7.85e-02 41_[+2(4.67e-05)]_49 chrV-NC_003076:1395612-1 6.44e-01 100 chrV-NC_003076:26645161- 7.53e-02 79_[+2(5.23e-06)]_11 chrV-NC_003076:26533070- 9.01e-02 100 chrV-NC_003076:26899794- 8.96e-01 100 chrV-NC_003076:26641487- 7.44e-01 78_[+4(8.46e-05)]_12 chrV-NC_003076:1855800-1 1.95e-01 63_[+2(6.32e-06)]_27 chrV-NC_003076:22779197- 1.59e-01 88_[+3(6.01e-05)]_2 chrV-NC_003076:4451029-4 2.93e-02 100 chrV-NC_003076:25982522- 5.09e-01 100 chrV-NC_003076:945607-94 4.93e-01 100 chrV-NC_003076:3045845-3 4.15e-01 100 chrV-NC_003076:17363432- 1.12e-04 47_[+6(6.80e-07)]_26_[+4(1.74e-05)]_7 chrV-NC_003076:2123643-2 3.26e-01 100 chrV-NC_003076:2409276-2 2.12e-01 100 chrV-NC_003076:675966-67 5.52e-01 100 chrV-NC_003076:20779537- 5.93e-03 51_[+2(6.75e-07)]_39 chrV-NC_003076:24505426- 9.14e-02 100 chrV-NC_003076:24415564- 1.12e-01 34_[+4(7.66e-06)]_56 chrV-NC_003076:9480412-9 3.02e-02 48_[+1(4.32e-05)]_42 chrV-NC_003076:6320651-6 6.97e-03 44_[+1(3.08e-06)]_46 chrV-NC_003076:312381-31 5.63e-01 100 chrV-NC_003076:21763609- 7.62e-03 53_[+5(1.08e-05)]_39 chrV-NC_003076:25805087- 1.71e-02 41_[+7(2.87e-05)]_5_[+2(1.58e-05)]_35 chrV-NC_003076:6556395-6 1.10e-02 45_[+8(4.08e-05)]_45 chrV-NC_003076:792884-79 3.80e-03 53_[+1(4.91e-06)]_37 chrV-NC_003076:2856548-2 4.99e-02 100 chrV-NC_003076:18947043- 2.88e-03 100 chrV-NC_003076:26805608- 8.45e-03 24_[+3(3.49e-05)]_[+3(1.47e-05)]_16_[+4(3.28e-05)]_19_[+4(3.28e-05)]_1 chrV-NC_003076:26138524- 4.01e-03 85_[+3(8.01e-06)]_5 chrV-NC_003076:5863141-5 3.23e-01 5_[+2(7.36e-05)]_85 chrV-NC_003076:6828958-6 2.51e-01 100 chrV-NC_003076:22997200- 4.06e-05 35_[+2(1.39e-05)]_19_[+4(5.55e-05)]_13_[+3(6.65e-07)]_3 chrV-NC_003076:3048829-3 1.18e-01 66_[+4(1.13e-06)]_24 chrV-NC_003076:24578696- 8.22e-01 100 chrV-NC_003076:23132906- 4.42e-01 20_[+5(7.47e-05)]_72 chrV-NC_003076:18000346- 1.13e-02 7_[+1(2.15e-05)]_83 chrV-NC_003076:15711862- 9.95e-02 56_[+7(1.17e-05)]_35 chrV-NC_003076:7697574-7 8.28e-01 100 chrV-NC_003076:3396232-3 5.62e-04 32_[+5(1.08e-05)]_60 chrV-NC_003076:5306644-5 1.29e-03 8_[+10(1.35e-07)]_82 chrV-NC_003076:1279585-1 1.56e-02 100 chrV-NC_003076:3771493-3 2.23e-02 36_[+5(2.55e-05)]_56 chrV-NC_003076:206010-20 1.30e-01 21_[+4(1.35e-05)]_69 chrV-NC_003076:24994788- 3.18e-01 100 chrV-NC_003076:8004870-8 3.47e-01 100 chrV-NC_003076:24996090- 8.38e-01 100 chrV-NC_003076:2284144-2 5.00e-03 31_[+1(4.32e-05)]_7_[+1(3.00e-05)]_16_[+1(4.91e-06)]_16 chrV-NC_003076:7694936-7 1.26e-01 100 chrV-NC_003076:3318152-3 3.11e-03 70_[+7(9.49e-06)]_21 chrV-NC_003076:17550144- 8.13e-03 54_[+4(6.27e-05)]_1_[+4(2.65e-05)]_25 chrV-NC_003076:24507182- 3.89e-02 27_[+2(7.36e-05)]_63 chrV-NC_003076:23146998- 4.13e-01 100 chrV-NC_003076:7055346-7 6.44e-01 100 chrV-NC_003076:24506357- 4.51e-01 100 chrV-NC_003076:3864653-3 1.26e-05 26_[+5(9.69e-05)]_15_[+5(9.69e-05)]_13_[+1(8.01e-06)]_20 chrV-NC_003076:5420138-5 9.26e-02 13_[+7(9.49e-06)]_78 chrV-NC_003076:3478444-3 7.28e-03 77_[+3(1.24e-05)]_13 chrV-NC_003076:26211298- 3.71e-01 100 chrV-NC_003076:7174990-7 4.53e-01 100 chrV-NC_003076:23659088- 4.05e-03 37_[+5(6.80e-05)]_55 chrV-NC_003076:5866573-5 1.93e-02 35_[+3(2.86e-06)]_55 chrV-NC_003076:13937850- 2.46e-01 38_[+6(4.03e-05)]_52 chrV-NC_003076:1950972-1 8.84e-04 37_[+7(1.17e-05)]_12_[+6(6.80e-07)]_[+6(6.80e-07)]_[+6(6.80e-07)]_12 chrV-NC_003076:9629091-9 2.20e-01 100 chrV-NC_003076:2840358-2 8.48e-01 100 chrV-NC_003076:2841201-2 7.16e-02 100 chrV-NC_003076:26851827- 2.59e-02 73_[+5(3.89e-05)]_19 chrV-NC_003076:15871702- 6.33e-02 100 chrV-NC_003076:4984711-4 2.10e-02 100 chrV-NC_003076:26149135- 8.20e-02 31_[+2(4.09e-05)]_59 chrV-NC_003076:22388470- 1.71e-01 41_[+2(5.20e-05)]_49 chrV-NC_003076:25086892- 2.27e-02 14_[+5(5.72e-05)]_78 chrV-NC_003076:5205664-5 1.66e-01 100 chrV-NC_003076:23391713- 4.72e-01 10_[+6(9.95e-06)]_80 chrV-NC_003076:7265876-7 2.25e-05 [+2(9.47e-06)]_24_[+3(4.43e-05)]_11_[+4(6.99e-05)]_35 chrV-NC_003076:4156345-4 1.35e-02 100 chrV-NC_003076:25307527- 4.70e-01 100 chrV-NC_003076:9799116-9 5.52e-01 100 chrV-NC_003076:966143-96 8.41e-01 100 chrV-NC_003076:2291547-2 8.40e-01 100 chrV-NC_003076:8903397-8 3.96e-03 50_[+2(2.51e-06)]_40 chrV-NC_003076:5616726-5 6.37e-03 89_[+3(2.19e-06)]_1 chrV-NC_003076:26012556- 5.23e-03 11_[+5(4.57e-05)]_69_[+3(2.27e-05)]_2 chrV-NC_003076:2612869-2 4.70e-03 14_[+5(1.08e-05)]_44_[+2(9.82e-05)]_24 chrV-NC_003076:7385658-7 3.85e-03 31_[+6(6.87e-05)]_5_[+1(3.08e-06)]_44 chrV-NC_003076:3515165-3 3.59e-03 21_[+6(5.60e-06)]_69 chrV-NC_003076:6399603-6 2.18e-03 79_[+10(2.68e-05)]_11 chrV-NC_003076:24993918- 7.49e-02 66_[+5(1.08e-05)]_26 chrV-NC_003076:5227549-5 3.36e-04 14_[+5(9.69e-05)]_4_[+8(4.61e-07)]_64 chrV-NC_003076:3181996-3 4.91e-01 100 chrV-NC_003076:6409328-6 2.67e-03 100 chrV-NC_003076:2234878-2 5.20e-03 37_[+8(2.30e-07)]_53 chrV-NC_003076:26837903- 1.51e-01 78_[+3(4.00e-06)]_12 chrV-NC_003076:16337677- 9.67e-03 37_[+2(7.36e-05)]_53 chrV-NC_003076:26765557- 2.38e-01 100 chrV-NC_003076:8543262-8 9.68e-01 100 chrV-NC_003076:536555-53 2.78e-01 100 chrV-NC_003076:2532992-2 4.71e-01 100 chrV-NC_003076:2985552-2 9.47e-02 17_[+7(3.66e-06)]_74 chrV-NC_003076:21154905- 7.31e-02 18_[+5(3.89e-05)]_74 chrV-NC_003076:13936283- 6.13e-01 100 chrV-NC_003076:1891492-1 8.84e-03 78_[+3(1.13e-05)]_12 chrV-NC_003076:6812378-6 1.85e-06 1_[+3(2.19e-06)]_36_[+7(2.16e-05)]_31_[+10(1.35e-07)]_3 chrV-NC_003076:3508590-3 6.51e-01 100 chrV-NC_003076:4255043-4 5.08e-01 100 chrV-NC_003076:10455493- 5.57e-05 21_[+3(8.08e-05)]_23_[+2(1.02e-05)]_7_[+6(2.65e-05)]_19 chrV-NC_003076:6225921-6 5.26e-01 100 chrV-NC_003076:1711541-1 8.92e-01 100 chrV-NC_003076:16563580- 6.67e-03 59_[+4(1.13e-06)]_31 chrV-NC_003076:26286499- 8.97e-04 62_[+5(3.98e-06)]_14_[+7(3.66e-06)]_7 chrV-NC_003076:26042698- 2.20e-04 14_[+4(3.82e-05)]_11_[+2(4.07e-06)]_55 chrV-NC_003076:24878541- 2.58e-01 3_[+4(5.87e-06)]_42_[+4(1.12e-05)]_35 chrV-NC_003076:7256719-7 1.17e-01 46_[+1(4.91e-06)]_44 chrV-NC_003076:1894196-1 2.25e-03 51_[+7(6.24e-05)]_23_[+3(8.08e-05)]_7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************