******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= 1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events.100bp.fasta ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII-NC_003074:5216276 1.0000 200 chrIII-NC_003074:2285939 1.0000 200 chrIII-NC_003074:4732955 1.0000 200 chrIII-NC_003074:2056022 1.0000 200 chrIII-NC_003074:1927636 1.0000 200 chrIII-NC_003074:2348858 1.0000 200 chrIII-NC_003074:2047653 1.0000 200 chrIII-NC_003074:1395996 1.0000 200 chrIII-NC_003074:1976038 1.0000 200 chrIII-NC_003074:2167873 1.0000 200 chrIII-NC_003074:2016186 1.0000 200 chrIII-NC_003074:7503344 1.0000 200 chrIII-NC_003074:4340381 1.0000 200 chrIII-NC_003074:2144865 1.0000 200 chrIII-NC_003074:9373252 1.0000 200 chrIII-NC_003074:2196946 1.0000 200 chrIII-NC_003074:4732789 1.0000 200 chrIII-NC_003074:338008- 1.0000 200 chrIII-NC_003074:8213415 1.0000 200 chrIII-NC_003074:9170046 1.0000 200 chrIII-NC_003074:2047827 1.0000 200 chrIII-NC_003074:4829131 1.0000 200 chrIII-NC_003074:1138696 1.0000 200 chrIII-NC_003074:2025163 1.0000 200 chrIII-NC_003074:6019703 1.0000 200 chrIII-NC_003074:1983705 1.0000 200 chrIII-NC_003074:1876334 1.0000 200 chrIII-NC_003074:4359967 1.0000 200 chrIII-NC_003074:5216309 1.0000 200 chrIII-NC_003074:1016321 1.0000 200 chrIII-NC_003074:1846867 1.0000 200 chrIII-NC_003074:2012113 1.0000 200 chrIII-NC_003074:2011442 1.0000 200 chrIII-NC_003074:1630167 1.0000 200 chrIII-NC_003074:8943976 1.0000 200 chrIII-NC_003074:877449- 1.0000 200 chrIII-NC_003074:1773973 1.0000 200 chrIII-NC_003074:4358519 1.0000 200 chrIII-NC_003074:2115360 1.0000 200 chrIII-NC_003074:1885525 1.0000 200 chrIII-NC_003074:5920240 1.0000 200 chrIII-NC_003074:4572319 1.0000 200 chrIII-NC_003074:665060- 1.0000 200 chrIII-NC_003074:5470385 1.0000 200 chrIII-NC_003074:1962057 1.0000 200 chrIII-NC_003074:1009490 1.0000 200 chrIII-NC_003074:2037905 1.0000 200 chrIII-NC_003074:4606158 1.0000 200 chrIII-NC_003074:1722372 1.0000 200 chrIII-NC_003074:1175197 1.0000 200 chrIII-NC_003074:8943216 1.0000 200 chrIII-NC_003074:9717966 1.0000 200 chrIII-NC_003074:611194- 1.0000 200 chrIII-NC_003074:1245385 1.0000 200 chrIII-NC_003074:5236747 1.0000 200 chrIII-NC_003074:2214119 1.0000 200 chrIII-NC_003074:3885203 1.0000 200 chrIII-NC_003074:2098810 1.0000 200 chrIII-NC_003074:1945323 1.0000 200 chrIII-NC_003074:1675554 1.0000 200 chrIII-NC_003074:3003367 1.0000 200 chrIII-NC_003074:2098821 1.0000 200 chrIII-NC_003074:822690- 1.0000 200 chrIII-NC_003074:5236683 1.0000 200 chrII-NC_003071:7934198- 1.0000 200 chrII-NC_003071:13036732 1.0000 200 chrII-NC_003071:7935107- 1.0000 200 chrII-NC_003071:18882618 1.0000 200 chrII-NC_003071:17508903 1.0000 200 chrII-NC_003071:19114215 1.0000 200 chrII-NC_003071:17189231 1.0000 200 chrII-NC_003071:560631-5 1.0000 200 chrII-NC_003071:12849576 1.0000 200 chrII-NC_003071:19100983 1.0000 200 chrII-NC_003071:12326803 1.0000 200 chrII-NC_003071:12108197 1.0000 200 chrII-NC_003071:8760319- 1.0000 200 chrII-NC_003071:18095440 1.0000 200 chrII-NC_003071:12173602 1.0000 200 chrII-NC_003071:16111201 1.0000 200 chrII-NC_003071:14331269 1.0000 200 chrII-NC_003071:12321522 1.0000 200 chrII-NC_003071:18188065 1.0000 200 chrII-NC_003071:19227465 1.0000 200 chrII-NC_003071:11689161 1.0000 200 chrII-NC_003071:19491297 1.0000 200 chrII-NC_003071:10628311 1.0000 200 chrII-NC_003071:18786456 1.0000 200 chrII-NC_003071:8813586- 1.0000 200 chrII-NC_003071:14851801 1.0000 200 chrII-NC_003071:15099380 1.0000 200 chrII-NC_003071:11941166 1.0000 200 chrII-NC_003071:9770577- 1.0000 200 chrII-NC_003071:6920409- 1.0000 200 chrII-NC_003071:14450955 1.0000 200 chrII-NC_003071:9770677- 1.0000 200 chrII-NC_003071:641561-6 1.0000 200 chrII-NC_003071:12946397 1.0000 200 chrII-NC_003071:17819771 1.0000 200 chrII-NC_003071:17975979 1.0000 200 chrII-NC_003071:18749207 1.0000 200 chrII-NC_003071:12941156 1.0000 200 chrII-NC_003071:19015799 1.0000 200 chrII-NC_003071:16505491 1.0000 200 chrII-NC_003071:8544091- 1.0000 200 chrII-NC_003071:18811073 1.0000 200 chrII-NC_003071:12185823 1.0000 200 chrII-NC_003071:14489582 1.0000 200 chrII-NC_003071:11771575 1.0000 200 chrII-NC_003071:9580055- 1.0000 200 chrII-NC_003071:14193902 1.0000 200 chrII-NC_003071:17796012 1.0000 200 chrII-NC_003071:13036795 1.0000 200 chrII-NC_003071:18423231 1.0000 200 chrI-NC_003070:8166392-8 1.0000 200 chrI-NC_003070:364212-36 1.0000 200 chrI-NC_003070:22343054- 1.0000 200 chrI-NC_003070:17253659- 1.0000 200 chrI-NC_003070:16467893- 1.0000 200 chrI-NC_003070:30371959- 1.0000 200 chrI-NC_003070:72146-723 1.0000 200 chrI-NC_003070:7340458-7 1.0000 200 chrI-NC_003070:6867963-6 1.0000 200 chrI-NC_003070:23126552- 1.0000 200 chrI-NC_003070:23286838- 1.0000 200 chrI-NC_003070:28953600- 1.0000 200 chrI-NC_003070:18321436- 1.0000 200 chrI-NC_003070:7930400-7 1.0000 200 chrI-NC_003070:7142415-7 1.0000 200 chrI-NC_003070:19070051- 1.0000 200 chrI-NC_003070:26164321- 1.0000 200 chrI-NC_003070:5137983-5 1.0000 200 chrI-NC_003070:24331613- 1.0000 200 chrI-NC_003070:6174484-6 1.0000 200 chrI-NC_003070:24732448- 1.0000 200 chrI-NC_003070:28954498- 1.0000 200 chrI-NC_003070:23412259- 1.0000 200 chrI-NC_003070:26043093- 1.0000 200 chrI-NC_003070:5968015-5 1.0000 200 chrI-NC_003070:28955713- 1.0000 200 chrI-NC_003070:24760580- 1.0000 200 chrI-NC_003070:27294385- 1.0000 200 chrI-NC_003070:25335093- 1.0000 200 chrI-NC_003070:29121010- 1.0000 200 chrI-NC_003070:10860458- 1.0000 200 chrI-NC_003070:5018083-5 1.0000 200 chrI-NC_003070:1143820-1 1.0000 200 chrI-NC_003070:10353875- 1.0000 200 chrI-NC_003070:18627576- 1.0000 200 chrI-NC_003070:29406817- 1.0000 200 chrI-NC_003070:29399321- 1.0000 200 chrI-NC_003070:5070745-5 1.0000 200 chrI-NC_003070:25743975- 1.0000 200 chrI-NC_003070:18942515- 1.0000 200 chrI-NC_003070:3108015-3 1.0000 200 chrI-NC_003070:6746757-6 1.0000 200 chrI-NC_003070:20876436- 1.0000 200 chrI-NC_003070:4082490-4 1.0000 200 chrI-NC_003070:11454805- 1.0000 200 chrI-NC_003070:2214934-2 1.0000 200 chrI-NC_003070:30267504- 1.0000 200 chrI-NC_003070:28804880- 1.0000 200 chrI-NC_003070:22877423- 1.0000 200 chrI-NC_003070:26038263- 1.0000 200 chrI-NC_003070:1880787-1 1.0000 200 chrI-NC_003070:4548671-4 1.0000 200 chrI-NC_003070:6899616-6 1.0000 200 chrI-NC_003070:8598740-8 1.0000 200 chrI-NC_003070:11472862- 1.0000 200 chrI-NC_003070:28467619- 1.0000 200 chrI-NC_003070:6311195-6 1.0000 200 chrI-NC_003070:23734604- 1.0000 200 chrI-NC_003070:30249255- 1.0000 200 chrI-NC_003070:1773727-1 1.0000 200 chrI-NC_003070:23238411- 1.0000 200 chrI-NC_003070:8563015-8 1.0000 200 chrI-NC_003070:20084599- 1.0000 200 chrI-NC_003070:6560769-6 1.0000 200 chrI-NC_003070:25877584- 1.0000 200 chrI-NC_003070:16713584- 1.0000 200 chrI-NC_003070:12228596- 1.0000 200 chrI-NC_003070:21517777- 1.0000 200 chrI-NC_003070:7930555-7 1.0000 200 chrI-NC_003070:21043046- 1.0000 200 chrI-NC_003070:16713723- 1.0000 200 chrI-NC_003070:25736387- 1.0000 200 chrI-NC_003070:22512251- 1.0000 200 chrI-NC_003070:8596542-8 1.0000 200 chrI-NC_003070:4132322-4 1.0000 200 chrI-NC_003070:26097575- 1.0000 200 chrI-NC_003070:1953904-1 1.0000 200 chrI-NC_003070:6174672-6 1.0000 200 chrI-NC_003070:9763126-9 1.0000 200 chrI-NC_003070:21133615- 1.0000 200 chrI-NC_003070:7270500-7 1.0000 200 chrI-NC_003070:1143756-1 1.0000 200 chrI-NC_003070:25320229- 1.0000 200 chrI-NC_003070:28292956- 1.0000 200 chrI-NC_003070:26164485- 1.0000 200 chrI-NC_003070:28143859- 1.0000 200 chrI-NC_003070:28315795- 1.0000 200 chrI-NC_003070:7065346-7 1.0000 200 chrI-NC_003070:10014137- 1.0000 200 chrI-NC_003070:3664090-3 1.0000 200 chrI-NC_003070:28954838- 1.0000 200 chrI-NC_003070:1953781-1 1.0000 200 chrIV-NC_003075:13685900 1.0000 200 chrIV-NC_003075:11604485 1.0000 200 chrIV-NC_003075:13017928 1.0000 200 chrIV-NC_003075:12379981 1.0000 200 chrIV-NC_003075:33765-33 1.0000 200 chrIV-NC_003075:17535190 1.0000 200 chrIV-NC_003075:14141422 1.0000 200 chrIV-NC_003075:13475395 1.0000 200 chrIV-NC_003075:13023435 1.0000 200 chrIV-NC_003075:14863096 1.0000 200 chrIV-NC_003075:17395740 1.0000 200 chrIV-NC_003075:6752985- 1.0000 200 chrIV-NC_003075:14118209 1.0000 200 chrIV-NC_003075:18318587 1.0000 200 chrIV-NC_003075:11425880 1.0000 200 chrIV-NC_003075:272143-2 1.0000 200 chrIV-NC_003075:14266719 1.0000 200 chrIV-NC_003075:17397611 1.0000 200 chrIV-NC_003075:16613081 1.0000 200 chrIV-NC_003075:16256073 1.0000 200 chrIV-NC_003075:17319773 1.0000 200 chrIV-NC_003075:16656874 1.0000 200 chrIV-NC_003075:8100451- 1.0000 200 chrIV-NC_003075:12769653 1.0000 200 chrIV-NC_003075:2661596- 1.0000 200 chrIV-NC_003075:8203258- 1.0000 200 chrIV-NC_003075:13854216 1.0000 200 chrIV-NC_003075:16860561 1.0000 200 chrIV-NC_003075:17048860 1.0000 200 chrIV-NC_003075:18472024 1.0000 200 chrIV-NC_003075:7349242- 1.0000 200 chrIV-NC_003075:1494888- 1.0000 200 chrIV-NC_003075:10600009 1.0000 200 chrIV-NC_003075:13023617 1.0000 200 chrIV-NC_003075:11971410 1.0000 200 chrIV-NC_003075:6771834- 1.0000 200 chrIV-NC_003075:17736542 1.0000 200 chrIV-NC_003075:17798664 1.0000 200 chrIV-NC_003075:15948601 1.0000 200 chrIV-NC_003075:6906145- 1.0000 200 chrIV-NC_003075:17409244 1.0000 200 chrIV-NC_003075:6771910- 1.0000 200 chrIV-NC_003075:12051681 1.0000 200 chrIV-NC_003075:14331411 1.0000 200 chrIV-NC_003075:13016235 1.0000 200 chrIV-NC_003075:15231300 1.0000 200 chrIV-NC_003075:17334368 1.0000 200 chrIV-NC_003075:9443322- 1.0000 200 chrIV-NC_003075:7369585- 1.0000 200 chrV-NC_003076:22649608- 1.0000 200 chrV-NC_003076:8344069-8 1.0000 200 chrV-NC_003076:2303219-2 1.0000 200 chrV-NC_003076:16135188- 1.0000 200 chrV-NC_003076:5529995-5 1.0000 200 chrV-NC_003076:5177754-5 1.0000 200 chrV-NC_003076:1375822-1 1.0000 200 chrV-NC_003076:26806403- 1.0000 200 chrV-NC_003076:24836685- 1.0000 200 chrV-NC_003076:18215713- 1.0000 200 chrV-NC_003076:7266265-7 1.0000 200 chrV-NC_003076:588900-58 1.0000 200 chrV-NC_003076:3865585-3 1.0000 200 chrV-NC_003076:10459004- 1.0000 200 chrV-NC_003076:7524647-7 1.0000 200 chrV-NC_003076:2985446-2 1.0000 200 chrV-NC_003076:23762535- 1.0000 200 chrV-NC_003076:25086812- 1.0000 200 chrV-NC_003076:7265855-7 1.0000 200 chrV-NC_003076:8376625-8 1.0000 200 chrV-NC_003076:8359800-8 1.0000 200 chrV-NC_003076:556014-55 1.0000 200 chrV-NC_003076:21723045- 1.0000 200 chrV-NC_003076:23840693- 1.0000 200 chrV-NC_003076:24935013- 1.0000 200 chrV-NC_003076:20781642- 1.0000 200 chrV-NC_003076:7673076-7 1.0000 200 chrV-NC_003076:23785171- 1.0000 200 chrV-NC_003076:24886947- 1.0000 200 chrV-NC_003076:900190-90 1.0000 200 chrV-NC_003076:26807915- 1.0000 200 chrV-NC_003076:16635429- 1.0000 200 chrV-NC_003076:25972709- 1.0000 200 chrV-NC_003076:9480398-9 1.0000 200 chrV-NC_003076:16451031- 1.0000 200 chrV-NC_003076:25900220- 1.0000 200 chrV-NC_003076:24239588- 1.0000 200 chrV-NC_003076:23773879- 1.0000 200 chrV-NC_003076:20014837- 1.0000 200 chrV-NC_003076:9133236-9 1.0000 200 chrV-NC_003076:766920-76 1.0000 200 chrV-NC_003076:26786389- 1.0000 200 chrV-NC_003076:24953160- 1.0000 200 chrV-NC_003076:14755579- 1.0000 200 chrV-NC_003076:7960250-7 1.0000 200 chrV-NC_003076:23391751- 1.0000 200 chrV-NC_003076:6833045-6 1.0000 200 chrV-NC_003076:2027935-2 1.0000 200 chrV-NC_003076:10356668- 1.0000 200 chrV-NC_003076:1212725-1 1.0000 200 chrV-NC_003076:18358999- 1.0000 200 chrV-NC_003076:4460424-4 1.0000 200 chrV-NC_003076:26155-263 1.0000 200 chrV-NC_003076:21437588- 1.0000 200 chrV-NC_003076:4734829-4 1.0000 200 chrV-NC_003076:24240069- 1.0000 200 chrV-NC_003076:8376552-8 1.0000 200 chrV-NC_003076:9515557-9 1.0000 200 chrV-NC_003076:15460593- 1.0000 200 chrV-NC_003076:75167-753 1.0000 200 chrV-NC_003076:16450886- 1.0000 200 chrV-NC_003076:24239953- 1.0000 200 chrV-NC_003076:1855774-1 1.0000 200 chrV-NC_003076:5011856-5 1.0000 200 chrV-NC_003076:756609-75 1.0000 200 chrV-NC_003076:26805534- 1.0000 200 chrV-NC_003076:16440746- 1.0000 200 chrV-NC_003076:5205507-5 1.0000 200 chrV-NC_003076:15997367- 1.0000 200 chrV-NC_003076:2561208-2 1.0000 200 chrV-NC_003076:9628962-9 1.0000 200 chrV-NC_003076:448654-44 1.0000 200 chrV-NC_003076:5962181-5 1.0000 200 chrV-NC_003076:7833316-7 1.0000 200 chrV-NC_003076:266618-26 1.0000 200 chrV-NC_003076:973984-97 1.0000 200 chrV-NC_003076:3857021-3 1.0000 200 chrV-NC_003076:24476843- 1.0000 200 chrV-NC_003076:25158624- 1.0000 200 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme 1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events.100bp.fasta -maxw 10 -dna -nmotifs 10 -maxsize 200000 -o meme-1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 10 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 334 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 66800 N= 334 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.307 C 0.192 G 0.192 T 0.309 Background letter frequencies (from dataset with add-one prior applied): A 0.307 C 0.192 G 0.192 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 10 sites = 121 llr = 1082 E-value = 1.0e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 14:a::::23 pos.-specific C 139:a:::14 probability G 511::a:a31 matrix T 23::::a:42 bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 **** * Relative 1.4 ****** Entropy 1.2 ****** (12.9 bits) 1.0 ****** 0.7 ****** 0.5 * ****** 0.2 * ****** * 0.0 ---------- Multilevel GACACGTGTC consensus TT GA sequence C AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:1375822-1 35 4.57e-07 CCAGTATTGA GCCACGTGTC TTCTGCCAAT chrI-NC_003070:28143859- 169 4.57e-07 AATACAATCC GCCACGTGTC CCATCTTCAC chrI-NC_003070:6899616-6 95 4.57e-07 TACAATTTGT GCCACGTGTC CTATCCATAG chrI-NC_003070:16467893- 95 4.57e-07 ACCCGTCACT GCCACGTGTC ATCCGGATCT chrV-NC_003076:25158624- 98 1.19e-06 GGTTTTCATG GACACGTGTC AAGTTTCCAA chrV-NC_003076:8376552-8 34 1.19e-06 TTTTCGTTTG GACACGTGTC CTGCTTTATC chrIV-NC_003075:13685900 98 1.19e-06 TGGTCCAACT GACACGTGTC ATCACGGGGA chrI-NC_003070:6174672-6 98 1.19e-06 GGTTGGTGAC GACACGTGTC CTCAATCATT chrI-NC_003070:8596542-8 98 1.19e-06 AATGAGTTTG GACACGTGTC GACATCTCGA chrI-NC_003070:10860458- 98 1.19e-06 ACAATTTACT GACACGTGTC ATTTAGCTTC chrII-NC_003071:7935107- 98 1.19e-06 CTTACTTTGC GACACGTGTC ATGTTCCTTC chrI-NC_003070:18942515- 95 1.92e-06 CAATATCTTT GTCACGTGTC ACTCCCACAA chrI-NC_003070:23126552- 95 1.92e-06 GTGGCATACA GTCACGTGTC AGCGATCGGA chrV-NC_003076:9133236-9 98 2.65e-06 ACCCCATTAC GACACGTGAC AGGCTGGGCA chrIII-NC_003074:1675554 98 2.65e-06 GGAAATCACA GACACGTGAC GAGAAGAACG chrIV-NC_003075:13016235 95 4.30e-06 CTCTGTGAAT GCCACGTGGA TAAGAAACAG chrI-NC_003070:22877423- 95 4.30e-06 TAGTAAGAAT GCCACGTGGA TTAATAAGCA chrII-NC_003071:12108197 73 4.30e-06 TCACGATGAT GCCACGTGTA CTTCAAAATA chrII-NC_003071:560631-5 95 4.30e-06 ATCCACATGT GCCACGTGGA GCAGCGTGTC chrV-NC_003076:8359800-8 95 5.91e-06 ATAGGAATAT GACACGTGTA TGGTTATTAT chrV-NC_003076:24836685- 95 5.91e-06 GTTAGTACGT GACACGTGTA AACCAGTGAC chrI-NC_003070:26164485- 98 5.91e-06 ATGATTATCC GACACGTGGA TTTAATATGA chrI-NC_003070:7930555-7 98 5.91e-06 TTAGAGAAGG GTCACGTGAC GTTTGACCTG chrI-NC_003070:17253659- 114 5.91e-06 GTCTATTTTT GACACGTGTA ATGGCCATAA chrI-NC_003070:8166392-8 98 5.91e-06 AGTAAAAAAA GACACGTGTA GATGCTATAA chrII-NC_003071:17189231 95 5.91e-06 AAATATAGCT GACACGTGTA AACGTCGGTG chrII-NC_003071:18882618 98 5.91e-06 CAGGGAGATA GTCACGTGAC TTGCCTGACC chrIII-NC_003074:9717966 95 5.91e-06 TAGCACGACT GACACGTGTA TCCTACGAGG chrIII-NC_003074:5470385 98 5.91e-06 ATTGGAGTTT GTCACGTGAC GGAATCTTAT chrIV-NC_003075:16256073 140 6.65e-06 TTTAGTAGAA GCCACGTGTT GCGTTCGTGT chrV-NC_003076:5205507-5 95 8.84e-06 CTTCGAATAA TCCACGTGTC ACCTTAAGAT chrIV-NC_003075:7369585- 66 8.84e-06 GCTCGTAGAC GACACGTGTT GAAGTGTAAT chrIV-NC_003075:17334368 95 8.84e-06 GAAGTCAGCT TCCACGTGTC CTATTTATGT chrIV-NC_003075:14118209 98 8.84e-06 ATATATTATC GACACGTGTT AATCTCTTAC chrI-NC_003070:21043046- 134 8.84e-06 CCGATGAAAA TCCACGTGGC ACTCCGATCT chrI-NC_003070:1773727-1 98 8.84e-06 TGCAGCTGGG GACACGTGGT GGATAAGGAG chrI-NC_003070:18627576- 98 8.84e-06 CGTATAACAA GACACGTGTT GCAAGAGAAG chrI-NC_003070:6174484-6 75 8.84e-06 GAAAATGCCA TCCACGTGTC AGCCTCGTTG chrII-NC_003071:8544091- 78 8.84e-06 AGGAAAAAGT GACACGTGGT AGGAGGTTAA chrII-NC_003071:17975979 23 8.84e-06 TTCTGGCGTT GACACGTGGT GATTGCTGAT chrII-NC_003071:12173602 98 8.84e-06 GACAGAATGA GACACGTGGT GGTTTTAATG chrIV-NC_003075:18472024 159 1.12e-05 ATCTGGTCCA TACACGTGGC GTCGCTTTGT chrII-NC_003071:19114215 98 1.12e-05 AGATATTAAT TACACGTGGC GACAAAAAAG chrI-NC_003070:30249255- 95 1.17e-05 AGCTGCATCT CCCACGTGGC TCTCTTTCAT chrII-NC_003071:15099380 95 1.17e-05 ATAGCGAGGT CCCACGTGTC CCCCATAAGT chrIII-NC_003074:1175197 95 1.17e-05 ATTTGATGCT CCCACGTGGC CCAATGTAAC chrIV-NC_003075:15231300 95 1.50e-05 ACCCAACTTT CACACGTGTC GATTCCCTAT chrI-NC_003070:28315795- 95 1.50e-05 AATCCCATGT ACCACGTGTC TAGTTTTTTT chrI-NC_003070:25335093- 95 1.50e-05 GACTGACAAG GTCACGTGGT CTTTGACAGG chrV-NC_003076:16635429- 95 1.86e-05 CACGTGTTGT AACACGTGTC ATGACTCAGC chrI-NC_003070:26164321- 98 1.86e-05 AAGCTGTGTA AACACGTGGC ACATGACCCA chrIII-NC_003074:2285939 98 1.86e-05 TCACTAAATC GACACGTGAA CCGACAGAAA chrI-NC_003070:4132322-4 95 2.02e-05 CAATATACTC GGCACGTGCC TCTTTCCTCT chrI-NC_003070:364212-36 98 2.02e-05 TCCCTGTGCT GCCACGTGAT CACCATCCGA chrI-NC_003070:27294385- 41 2.37e-05 AAAATGGGGA GGCACGTGGA GTGAGCATGA chrIV-NC_003075:6752985- 98 2.74e-05 GGCCCATTTC ATCACGTGGC CTCACGTGTT chrI-NC_003070:1953781-1 95 2.74e-05 CTTTCTCCAT ATCACGTGTC CGATCCTCCA chrIII-NC_003074:7503344 69 2.74e-05 ATTACGAAGA GCCACGTGCT TATGGAGAAC chrII-NC_003071:17796012 98 2.98e-05 TTATGTGATA GTGACGTGGC AATAAACCAT chrIII-NC_003074:2025163 98 2.98e-05 ATCGGTTTGA GTGACGTGGC AAATATGGGC chrIII-NC_003074:2196946 98 2.98e-05 TCTCGGTAGT GACACGTGCT ATAATGCCCA chrIII-NC_003074:2047653 98 2.98e-05 AACCATCTGA GTGACGTGGC GCAAATGGAC chrV-NC_003076:18358999- 172 3.43e-05 ACCTGTGACT GTCACGTGCA TGCGTCTAAA chrIV-NC_003075:16656874 117 3.43e-05 CCACCATCAA ACCACGTGAC TGACCCAAAC chrIV-NC_003075:17535190 98 3.43e-05 CGTCTTTACC GTCACGTGAT AGATCGTTTC chrI-NC_003070:21133615- 98 3.43e-05 ATAATGAGAG TACACGTGCC ATCGATGAAC chrV-NC_003076:25086812- 95 3.88e-05 TGGGAGAATG TACACGTGTA CGGTAGAGAT chrV-NC_003076:2985446-2 98 3.88e-05 TTGGTTATAT TACACGTGGA AGTAAAGTAT chrI-NC_003070:7270500-7 8 4.26e-05 GACCGCC TCCACGTGGT CACACAGCTT chrII-NC_003071:18423231 95 4.26e-05 CGAGGATCAC CGCACGTGTC AACTGCAGGT chrIII-NC_003074:8943216 58 4.26e-05 GTTAAATTTT GAGACGTGAC AGTTAGCCAC chrIII-NC_003074:1885525 95 4.26e-05 GTTCCTAGGC ACCACGTGCC ATGCACCTGA chrV-NC_003076:448654-44 98 5.01e-05 TTGTTGTCCA TACACGTGTT ATATGCATAC chrV-NC_003076:26806403- 98 5.01e-05 CTCTCCACAA CTCACGTGAC TCACGTGAAT chrI-NC_003070:30371959- 95 5.01e-05 GATCTTATAG TACACGTGTT TGGGTCAAAT chrV-NC_003076:24476843- 98 5.77e-05 GGGCCCAATG ATCACGTGAC AGAGGTGATG chrV-NC_003076:4460424-4 98 5.77e-05 AGCAAGAGAA AACACGTGGA CCAATGATGT chrV-NC_003076:16135188- 95 5.77e-05 GAGAGTAGAT AACACGTGTA TATGAACGCG chrI-NC_003070:6867963-6 136 5.77e-05 TTGTAACTGA ATCACGTGAC TACTTCTTGT chrIII-NC_003074:8213415 98 5.77e-05 GAACTCGAGA AACACGTGGA TTTGGACAGT chrV-NC_003076:26155-263 98 6.29e-05 GCGCGTGGGA GGCACGTGAT GGAACTAAGT chrV-NC_003076:8376625-8 22 6.29e-05 TTATCTCAAC CACACGTGTT CTGCTTATCC chrI-NC_003070:23286838- 158 6.29e-05 CACTCTCATT GGCACGTGAT TCTCACGCTC chrIII-NC_003074:1962057 95 6.29e-05 CACGCGAGGC CTCACGTGCC TTAATTATTT chrV-NC_003076:1212725-1 98 7.09e-05 TCCGGTAAAC TCCACGTGAA GCAGTGTAGA chrV-NC_003076:766920-76 98 7.09e-05 CCCTATTTAG TCCACGTGAA GTAATCGGAC chrIV-NC_003075:9443322- 98 7.09e-05 TAGGGTCAGA TCCACGTGAA GTTCACATGC chrII-NC_003071:14450955 95 7.09e-05 AATGAAGAAG ATCACGTGCC ATGCACCTGA chrV-NC_003076:16451031- 73 7.74e-05 CGTTTACCTT GTCACGTGAG CAACCCAAAC chrII-NC_003071:19227465 103 7.74e-05 CGCTGGACAC GTCACGCGTC AATTTTTGTA chrIII-NC_003074:1245385 95 7.74e-05 AGGGTGAGAG GTCACGTGAG GGAGTAAAGA chrV-NC_003076:266618-26 98 8.31e-05 CGCGACTAAG GTGACGTGGA AAGGCCGGCC chrV-NC_003076:23773879- 98 8.31e-05 GGTGTTTTGT GTGACGTGGA TGAAAGGTAA chrIII-NC_003074:877449- 95 9.16e-05 AAAGTAAGAT TGCACGTGTA CACTGTTCCA chrIV-NC_003075:10600009 95 1.00e-04 ATGGTCCATA CCCACGTGCA TGGGAACTGT chrIV-NC_003075:14141422 98 1.00e-04 CCCCTCTCTG TACACGTGGG TCCCACTAAG chrII-NC_003071:19015799 117 1.00e-04 ACGCCATCGT GCGACGTGAA AATTGGAGAA chrIII-NC_003074:4358519 102 1.00e-04 AGAAGCACGT GTGACGTGTT GAGCAGATAA chrIV-NC_003075:14331411 95 1.18e-04 TACGGTCACT TTCACGTGCA AAAAGCCCAA chrIII-NC_003074:1630167 132 1.28e-04 GTGCGTGTGA GTCACGCGAC CCCAATATTT chrIV-NC_003075:17048860 95 1.36e-04 ATTGGCCATG TTCACGTGCT CTAGTGGGCC chrII-NC_003071:19491297 72 1.36e-04 TTTTCTTTGT GAGACGTGTG TCCTCGTCAA chrIII-NC_003074:2056022 95 1.36e-04 AAACGAAAGG ATGACGTGTC ATATTACTAT chrI-NC_003070:30267504- 98 1.43e-04 TTGAACAAAA ATCACGTGAT TGAGAGATAA chrI-NC_003070:10353875- 98 1.43e-04 TAAAAAGGTA TGCACGTGAA CGCTAAAAGA chrIII-NC_003074:4359967 98 1.43e-04 TTTAAGACGA GGGACGTGGT TTGAGAAACA chrII-NC_003071:9770677- 98 1.51e-04 AAAAATCTAC TCGACGTGGA GCGACCAGTG chrIII-NC_003074:2348858 98 1.51e-04 TTGTTATGTG TCGACGTGGA AGTAACACGT chrI-NC_003070:26043093- 186 1.59e-04 TTATTTAAGT TAGACGTGTA TTCCT chrIII-NC_003074:5236683 95 1.67e-04 TTCCTGAAAT TGCACGTGTG AGTCAGCATG chrIII-NC_003074:5236747 31 1.67e-04 TTCCTGAAAT TGCACGTGTG AGTCAGCATG chrI-NC_003070:5070745-5 35 1.79e-04 TCCACATCAA TTCACGCGTC ACATAAACAA chrII-NC_003071:12185823 95 1.79e-04 ACTGTCTACA AGGACGTGTC ATGTCTTGGT chrIII-NC_003074:9373252 98 1.79e-04 GTTGGCCCGC CGCACGTGAT CGAGCCTATC chrIV-NC_003075:18318587 98 1.88e-04 GATCTCTCCT CACACGTGCG TCTGTTATTT chrIII-NC_003074:338008- 52 1.96e-04 TTCTCGACAC ACGACGTGTT GATGCTCGCA chrI-NC_003070:16713723- 98 2.07e-04 CATGCATAAA TTGACGTGGT GACTTCGTGG chrI-NC_003070:5968015-5 95 2.07e-04 AGAAGAAGAA ATCACGTGAG TATTGTTGGT chrIV-NC_003075:8100451- 40 2.19e-04 TACACTGTAT CTGACGTGTT TTTGAGTTGA chrIV-NC_003075:2661596- 95 2.30e-04 AGAATCAAAA CCCACGCGCC TCTCGTCTTC chrIII-NC_003074:2144865 95 2.30e-04 ACGGATTTCA CCCACGCGCC CCCTTTTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:1375822-1 4.6e-07 34_[+1]_156 chrI-NC_003070:28143859- 4.6e-07 168_[+1]_22 chrI-NC_003070:6899616-6 4.6e-07 94_[+1]_96 chrI-NC_003070:16467893- 4.6e-07 94_[+1]_96 chrV-NC_003076:25158624- 1.2e-06 97_[+1]_93 chrV-NC_003076:8376552-8 1.2e-06 33_[+1]_157 chrIV-NC_003075:13685900 1.2e-06 97_[+1]_93 chrI-NC_003070:6174672-6 1.2e-06 97_[+1]_93 chrI-NC_003070:8596542-8 1.2e-06 97_[+1]_93 chrI-NC_003070:10860458- 1.2e-06 97_[+1]_93 chrII-NC_003071:7935107- 1.2e-06 97_[+1]_93 chrI-NC_003070:18942515- 1.9e-06 94_[+1]_96 chrI-NC_003070:23126552- 1.9e-06 94_[+1]_96 chrV-NC_003076:9133236-9 2.7e-06 97_[+1]_93 chrIII-NC_003074:1675554 2.7e-06 97_[+1]_93 chrIV-NC_003075:13016235 4.3e-06 94_[+1]_96 chrI-NC_003070:22877423- 4.3e-06 94_[+1]_96 chrII-NC_003071:12108197 4.3e-06 72_[+1]_118 chrII-NC_003071:560631-5 4.3e-06 94_[+1]_96 chrV-NC_003076:8359800-8 5.9e-06 94_[+1]_96 chrV-NC_003076:24836685- 5.9e-06 94_[+1]_96 chrI-NC_003070:26164485- 5.9e-06 97_[+1]_93 chrI-NC_003070:7930555-7 5.9e-06 97_[+1]_93 chrI-NC_003070:17253659- 5.9e-06 113_[+1]_77 chrI-NC_003070:8166392-8 5.9e-06 97_[+1]_93 chrII-NC_003071:17189231 5.9e-06 94_[+1]_96 chrII-NC_003071:18882618 5.9e-06 97_[+1]_93 chrIII-NC_003074:9717966 5.9e-06 94_[+1]_96 chrIII-NC_003074:5470385 5.9e-06 97_[+1]_93 chrIV-NC_003075:16256073 6.7e-06 139_[+1]_51 chrV-NC_003076:5205507-5 8.8e-06 94_[+1]_96 chrIV-NC_003075:7369585- 8.8e-06 65_[+1]_125 chrIV-NC_003075:17334368 8.8e-06 94_[+1]_96 chrIV-NC_003075:14118209 8.8e-06 97_[+1]_93 chrI-NC_003070:21043046- 8.8e-06 133_[+1]_57 chrI-NC_003070:1773727-1 8.8e-06 97_[+1]_93 chrI-NC_003070:18627576- 8.8e-06 97_[+1]_93 chrI-NC_003070:6174484-6 8.8e-06 74_[+1]_116 chrII-NC_003071:8544091- 8.8e-06 77_[+1]_113 chrII-NC_003071:17975979 8.8e-06 22_[+1]_168 chrII-NC_003071:12173602 8.8e-06 97_[+1]_93 chrIV-NC_003075:18472024 1.1e-05 158_[+1]_32 chrII-NC_003071:19114215 1.1e-05 97_[+1]_93 chrI-NC_003070:30249255- 1.2e-05 94_[+1]_96 chrII-NC_003071:15099380 1.2e-05 94_[+1]_96 chrIII-NC_003074:1175197 1.2e-05 94_[+1]_96 chrIV-NC_003075:15231300 1.5e-05 94_[+1]_96 chrI-NC_003070:28315795- 1.5e-05 94_[+1]_96 chrI-NC_003070:25335093- 1.5e-05 94_[+1]_96 chrV-NC_003076:16635429- 1.9e-05 94_[+1]_96 chrI-NC_003070:26164321- 1.9e-05 97_[+1]_93 chrIII-NC_003074:2285939 1.9e-05 97_[+1]_93 chrI-NC_003070:4132322-4 2e-05 94_[+1]_96 chrI-NC_003070:364212-36 2e-05 97_[+1]_93 chrI-NC_003070:27294385- 2.4e-05 40_[+1]_150 chrIV-NC_003075:6752985- 2.7e-05 97_[+1]_93 chrI-NC_003070:1953781-1 2.7e-05 94_[+1]_96 chrIII-NC_003074:7503344 2.7e-05 68_[+1]_122 chrII-NC_003071:17796012 3e-05 97_[+1]_93 chrIII-NC_003074:2025163 3e-05 97_[+1]_93 chrIII-NC_003074:2196946 3e-05 97_[+1]_93 chrIII-NC_003074:2047653 3e-05 97_[+1]_93 chrV-NC_003076:18358999- 3.4e-05 171_[+1]_19 chrIV-NC_003075:16656874 3.4e-05 116_[+1]_74 chrIV-NC_003075:17535190 3.4e-05 97_[+1]_93 chrI-NC_003070:21133615- 3.4e-05 97_[+1]_93 chrV-NC_003076:25086812- 3.9e-05 94_[+1]_96 chrV-NC_003076:2985446-2 3.9e-05 97_[+1]_93 chrI-NC_003070:7270500-7 4.3e-05 7_[+1]_183 chrII-NC_003071:18423231 4.3e-05 94_[+1]_96 chrIII-NC_003074:8943216 4.3e-05 57_[+1]_133 chrIII-NC_003074:1885525 4.3e-05 94_[+1]_96 chrV-NC_003076:448654-44 5e-05 97_[+1]_93 chrV-NC_003076:26806403- 5e-05 97_[+1]_93 chrI-NC_003070:30371959- 5e-05 94_[+1]_96 chrV-NC_003076:24476843- 5.8e-05 97_[+1]_93 chrV-NC_003076:4460424-4 5.8e-05 97_[+1]_93 chrV-NC_003076:16135188- 5.8e-05 94_[+1]_96 chrI-NC_003070:6867963-6 5.8e-05 135_[+1]_55 chrIII-NC_003074:8213415 5.8e-05 97_[+1]_93 chrV-NC_003076:26155-263 6.3e-05 97_[+1]_93 chrV-NC_003076:8376625-8 6.3e-05 21_[+1]_169 chrI-NC_003070:23286838- 6.3e-05 157_[+1]_33 chrIII-NC_003074:1962057 6.3e-05 94_[+1]_96 chrV-NC_003076:1212725-1 7.1e-05 97_[+1]_93 chrV-NC_003076:766920-76 7.1e-05 97_[+1]_93 chrIV-NC_003075:9443322- 7.1e-05 97_[+1]_93 chrII-NC_003071:14450955 7.1e-05 94_[+1]_96 chrV-NC_003076:16451031- 7.7e-05 72_[+1]_118 chrII-NC_003071:19227465 7.7e-05 102_[+1]_88 chrIII-NC_003074:1245385 7.7e-05 94_[+1]_96 chrV-NC_003076:266618-26 8.3e-05 97_[+1]_93 chrV-NC_003076:23773879- 8.3e-05 97_[+1]_93 chrIII-NC_003074:877449- 9.2e-05 94_[+1]_96 chrIV-NC_003075:10600009 0.0001 94_[+1]_96 chrIV-NC_003075:14141422 0.0001 97_[+1]_93 chrII-NC_003071:19015799 0.0001 116_[+1]_74 chrIII-NC_003074:4358519 0.0001 101_[+1]_89 chrIV-NC_003075:14331411 0.00012 94_[+1]_96 chrIII-NC_003074:1630167 0.00013 131_[+1]_59 chrIV-NC_003075:17048860 0.00014 94_[+1]_96 chrII-NC_003071:19491297 0.00014 71_[+1]_119 chrIII-NC_003074:2056022 0.00014 94_[+1]_96 chrI-NC_003070:30267504- 0.00014 97_[+1]_93 chrI-NC_003070:10353875- 0.00014 97_[+1]_93 chrIII-NC_003074:4359967 0.00014 97_[+1]_93 chrII-NC_003071:9770677- 0.00015 97_[+1]_93 chrIII-NC_003074:2348858 0.00015 97_[+1]_93 chrI-NC_003070:26043093- 0.00016 185_[+1]_5 chrIII-NC_003074:5236683 0.00017 94_[+1]_96 chrIII-NC_003074:5236747 0.00017 30_[+1]_160 chrI-NC_003070:5070745-5 0.00018 34_[+1]_156 chrII-NC_003071:12185823 0.00018 94_[+1]_96 chrIII-NC_003074:9373252 0.00018 97_[+1]_93 chrIV-NC_003075:18318587 0.00019 97_[+1]_93 chrIII-NC_003074:338008- 0.0002 51_[+1]_139 chrI-NC_003070:16713723- 0.00021 97_[+1]_93 chrI-NC_003070:5968015-5 0.00021 94_[+1]_96 chrIV-NC_003075:8100451- 0.00022 39_[+1]_151 chrIV-NC_003075:2661596- 0.00023 94_[+1]_96 chrIII-NC_003074:2144865 0.00023 94_[+1]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=10 seqs=121 chrV-NC_003076:1375822-1 ( 35) GCCACGTGTC 1 chrI-NC_003070:28143859- ( 169) GCCACGTGTC 1 chrI-NC_003070:6899616-6 ( 95) GCCACGTGTC 1 chrI-NC_003070:16467893- ( 95) GCCACGTGTC 1 chrV-NC_003076:25158624- ( 98) GACACGTGTC 1 chrV-NC_003076:8376552-8 ( 34) GACACGTGTC 1 chrIV-NC_003075:13685900 ( 98) GACACGTGTC 1 chrI-NC_003070:6174672-6 ( 98) GACACGTGTC 1 chrI-NC_003070:8596542-8 ( 98) GACACGTGTC 1 chrI-NC_003070:10860458- ( 98) GACACGTGTC 1 chrII-NC_003071:7935107- ( 98) GACACGTGTC 1 chrI-NC_003070:18942515- ( 95) GTCACGTGTC 1 chrI-NC_003070:23126552- ( 95) GTCACGTGTC 1 chrV-NC_003076:9133236-9 ( 98) GACACGTGAC 1 chrIII-NC_003074:1675554 ( 98) GACACGTGAC 1 chrIV-NC_003075:13016235 ( 95) GCCACGTGGA 1 chrI-NC_003070:22877423- ( 95) GCCACGTGGA 1 chrII-NC_003071:12108197 ( 73) GCCACGTGTA 1 chrII-NC_003071:560631-5 ( 95) GCCACGTGGA 1 chrV-NC_003076:8359800-8 ( 95) GACACGTGTA 1 chrV-NC_003076:24836685- ( 95) GACACGTGTA 1 chrI-NC_003070:26164485- ( 98) GACACGTGGA 1 chrI-NC_003070:7930555-7 ( 98) GTCACGTGAC 1 chrI-NC_003070:17253659- ( 114) GACACGTGTA 1 chrI-NC_003070:8166392-8 ( 98) GACACGTGTA 1 chrII-NC_003071:17189231 ( 95) GACACGTGTA 1 chrII-NC_003071:18882618 ( 98) GTCACGTGAC 1 chrIII-NC_003074:9717966 ( 95) GACACGTGTA 1 chrIII-NC_003074:5470385 ( 98) GTCACGTGAC 1 chrIV-NC_003075:16256073 ( 140) GCCACGTGTT 1 chrV-NC_003076:5205507-5 ( 95) TCCACGTGTC 1 chrIV-NC_003075:7369585- ( 66) GACACGTGTT 1 chrIV-NC_003075:17334368 ( 95) TCCACGTGTC 1 chrIV-NC_003075:14118209 ( 98) GACACGTGTT 1 chrI-NC_003070:21043046- ( 134) TCCACGTGGC 1 chrI-NC_003070:1773727-1 ( 98) GACACGTGGT 1 chrI-NC_003070:18627576- ( 98) GACACGTGTT 1 chrI-NC_003070:6174484-6 ( 75) TCCACGTGTC 1 chrII-NC_003071:8544091- ( 78) GACACGTGGT 1 chrII-NC_003071:17975979 ( 23) GACACGTGGT 1 chrII-NC_003071:12173602 ( 98) GACACGTGGT 1 chrIV-NC_003075:18472024 ( 159) TACACGTGGC 1 chrII-NC_003071:19114215 ( 98) TACACGTGGC 1 chrI-NC_003070:30249255- ( 95) CCCACGTGGC 1 chrII-NC_003071:15099380 ( 95) CCCACGTGTC 1 chrIII-NC_003074:1175197 ( 95) CCCACGTGGC 1 chrIV-NC_003075:15231300 ( 95) CACACGTGTC 1 chrI-NC_003070:28315795- ( 95) ACCACGTGTC 1 chrI-NC_003070:25335093- ( 95) GTCACGTGGT 1 chrV-NC_003076:16635429- ( 95) AACACGTGTC 1 chrI-NC_003070:26164321- ( 98) AACACGTGGC 1 chrIII-NC_003074:2285939 ( 98) GACACGTGAA 1 chrI-NC_003070:4132322-4 ( 95) GGCACGTGCC 1 chrI-NC_003070:364212-36 ( 98) GCCACGTGAT 1 chrI-NC_003070:27294385- ( 41) GGCACGTGGA 1 chrIV-NC_003075:6752985- ( 98) ATCACGTGGC 1 chrI-NC_003070:1953781-1 ( 95) ATCACGTGTC 1 chrIII-NC_003074:7503344 ( 69) GCCACGTGCT 1 chrII-NC_003071:17796012 ( 98) GTGACGTGGC 1 chrIII-NC_003074:2025163 ( 98) GTGACGTGGC 1 chrIII-NC_003074:2196946 ( 98) GACACGTGCT 1 chrIII-NC_003074:2047653 ( 98) GTGACGTGGC 1 chrV-NC_003076:18358999- ( 172) GTCACGTGCA 1 chrIV-NC_003075:16656874 ( 117) ACCACGTGAC 1 chrIV-NC_003075:17535190 ( 98) GTCACGTGAT 1 chrI-NC_003070:21133615- ( 98) TACACGTGCC 1 chrV-NC_003076:25086812- ( 95) TACACGTGTA 1 chrV-NC_003076:2985446-2 ( 98) TACACGTGGA 1 chrI-NC_003070:7270500-7 ( 8) TCCACGTGGT 1 chrII-NC_003071:18423231 ( 95) CGCACGTGTC 1 chrIII-NC_003074:8943216 ( 58) GAGACGTGAC 1 chrIII-NC_003074:1885525 ( 95) ACCACGTGCC 1 chrV-NC_003076:448654-44 ( 98) TACACGTGTT 1 chrV-NC_003076:26806403- ( 98) CTCACGTGAC 1 chrI-NC_003070:30371959- ( 95) TACACGTGTT 1 chrV-NC_003076:24476843- ( 98) ATCACGTGAC 1 chrV-NC_003076:4460424-4 ( 98) AACACGTGGA 1 chrV-NC_003076:16135188- ( 95) AACACGTGTA 1 chrI-NC_003070:6867963-6 ( 136) ATCACGTGAC 1 chrIII-NC_003074:8213415 ( 98) AACACGTGGA 1 chrV-NC_003076:26155-263 ( 98) GGCACGTGAT 1 chrV-NC_003076:8376625-8 ( 22) CACACGTGTT 1 chrI-NC_003070:23286838- ( 158) GGCACGTGAT 1 chrIII-NC_003074:1962057 ( 95) CTCACGTGCC 1 chrV-NC_003076:1212725-1 ( 98) TCCACGTGAA 1 chrV-NC_003076:766920-76 ( 98) TCCACGTGAA 1 chrIV-NC_003075:9443322- ( 98) TCCACGTGAA 1 chrII-NC_003071:14450955 ( 95) ATCACGTGCC 1 chrV-NC_003076:16451031- ( 73) GTCACGTGAG 1 chrII-NC_003071:19227465 ( 103) GTCACGCGTC 1 chrIII-NC_003074:1245385 ( 95) GTCACGTGAG 1 chrV-NC_003076:266618-26 ( 98) GTGACGTGGA 1 chrV-NC_003076:23773879- ( 98) GTGACGTGGA 1 chrIII-NC_003074:877449- ( 95) TGCACGTGTA 1 chrIV-NC_003075:10600009 ( 95) CCCACGTGCA 1 chrIV-NC_003075:14141422 ( 98) TACACGTGGG 1 chrII-NC_003071:19015799 ( 117) GCGACGTGAA 1 chrIII-NC_003074:4358519 ( 102) GTGACGTGTT 1 chrIV-NC_003075:14331411 ( 95) TTCACGTGCA 1 chrIII-NC_003074:1630167 ( 132) GTCACGCGAC 1 chrIV-NC_003075:17048860 ( 95) TTCACGTGCT 1 chrII-NC_003071:19491297 ( 72) GAGACGTGTG 1 chrIII-NC_003074:2056022 ( 95) ATGACGTGTC 1 chrI-NC_003070:30267504- ( 98) ATCACGTGAT 1 chrI-NC_003070:10353875- ( 98) TGCACGTGAA 1 chrIII-NC_003074:4359967 ( 98) GGGACGTGGT 1 chrII-NC_003071:9770677- ( 98) TCGACGTGGA 1 chrIII-NC_003074:2348858 ( 98) TCGACGTGGA 1 chrI-NC_003070:26043093- ( 186) TAGACGTGTA 1 chrIII-NC_003074:5236683 ( 95) TGCACGTGTG 1 chrIII-NC_003074:5236747 ( 31) TGCACGTGTG 1 chrI-NC_003070:5070745-5 ( 35) TTCACGCGTC 1 chrII-NC_003071:12185823 ( 95) AGGACGTGTC 1 chrIII-NC_003074:9373252 ( 98) CGCACGTGAT 1 chrIV-NC_003075:18318587 ( 98) CACACGTGCG 1 chrIII-NC_003074:338008- ( 52) ACGACGTGTT 1 chrI-NC_003070:16713723- ( 98) TTGACGTGGT 1 chrI-NC_003070:5968015-5 ( 95) ATCACGTGAG 1 chrIV-NC_003075:8100451- ( 40) CTGACGTGTT 1 chrIV-NC_003075:2661596- ( 95) CCCACGCGCC 1 chrIII-NC_003074:2144865 ( 95) CCCACGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 11.025 E= 1.0e-073 -104 -73 141 -47 24 46 -96 -18 -1356 215 -37 -1356 170 -1356 -1356 -1356 -1356 238 -1356 -1356 -1356 -1356 238 -1356 -1356 -222 -1356 163 -1356 -1356 238 -1356 -51 -73 41 42 -21 122 -154 -47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 121 E= 1.0e-073 0.148760 0.115702 0.512397 0.223140 0.363636 0.264463 0.099174 0.272727 0.000000 0.851240 0.148760 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.041322 0.000000 0.958678 0.000000 0.000000 1.000000 0.000000 0.214876 0.115702 0.256198 0.413223 0.264463 0.446281 0.066116 0.223140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GT][ATC]CACGTG[TGA][CAT] -------------------------------------------------------------------------------- Time 69.29 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 10 sites = 115 llr = 942 E-value = 7.6e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A a8948296a4 pos.-specific C ::::::1::: probability G :21328:4:6 matrix T :::3:::::: bits 2.4 2.1 1.9 1.7 * * Relative 1.4 * * ** * Entropy 1.2 * * *** ** (11.8 bits) 1.0 *** *** ** 0.7 *** ****** 0.5 *** ****** 0.2 ********** 0.0 ---------- Multilevel AAAAAGAAAG consensus TGA G A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:24953160- 12 1.14e-06 CGCTGCGGCA AAAGAGAGAG AGAGAGAGAG chrII-NC_003071:19100983 111 1.14e-06 GCATTGAGAG AAAGAGAGAG AGAGATGGTG chrIII-NC_003074:2012113 43 1.14e-06 AGTGAAATAG AAAGAGAGAG ATGGAGTTGA chrV-NC_003076:23785171- 173 4.78e-06 GAGTTAAAAA AAAAAGAGAG AAGTAGGCAG chrII-NC_003071:12946397 130 4.78e-06 AAGAGAAAAG AAAGAGAAAG AGACAAGAGA chrII-NC_003071:12321522 65 4.78e-06 AACTGGGGAT AAAGAGAAAG GTTAGATAAT chrIII-NC_003074:2056022 166 4.78e-06 CTGACAGGGC AAAAAGAGAG GGGCCAAAAA chrV-NC_003076:266618-26 175 7.68e-06 ATTACAGAAA AAAAAGAAAG GAGGAAAAAG chrIV-NC_003075:13017928 47 7.68e-06 ATTAGTATAA AAAAAGAAAG TAAAACTTGA chrI-NC_003070:21043046- 77 7.68e-06 CGTAAATACA AAAAAGAAAG CGACAGATGC chrIV-NC_003075:13854216 118 1.43e-05 TAGCAACTGC AAATAGAAAG GTCATGTAGT chrIV-NC_003075:8100451- 128 1.43e-05 CACACAACAT AAATAGAAAG TTTTATTATC chrIV-NC_003075:13023435 168 1.43e-05 CTTTAGTGGA AAATAGAAAG TAAAGCTTGA chrI-NC_003070:8598740-8 135 1.43e-05 TCGTTACCCA AAATAGAAAG ATGGAGTTAT chrI-NC_003070:20876436- 102 1.43e-05 TATTTGACTG AAATAGAAAG TAGAAACATA chrI-NC_003070:3108015-3 67 1.43e-05 AAATTTCCTA AAATAGAAAG ACTATGAAAC chrIII-NC_003074:5470385 59 1.43e-05 GAGAGGCAAC AAAGAGAGAA GAAAATAGAC chrIII-NC_003074:8943976 94 1.43e-05 TAAAAAAGGA AAAGAGAGAA TAGTTGTAAG chrV-NC_003076:24935013- 50 2.08e-05 ACCTCTTCAT AAAAAGAGAA GCTTTAATCT chrI-NC_003070:28315795- 5 2.08e-05 AAAC AAAAAGAGAA ATACGAGCCG chrI-NC_003070:27294385- 10 2.08e-05 GAGATTAAG AAAAAGAGAA GAAAGGGGAG chrIII-NC_003074:4340381 67 2.08e-05 AAAGATAAAG AAAGAGAAAA AATAATGAAG chrIII-NC_003074:1927636 38 2.08e-05 CGAGAGAAGA AAAAAGAGAA AATGGGCCCA chrV-NC_003076:756609-75 191 2.77e-05 GTGAAAGAAG AAAAAGAAAA chrV-NC_003076:21723045- 17 2.77e-05 GTTGATTTAA AAAAAGAAAA TATAAAACTA chrII-NC_003071:18423231 126 2.77e-05 AGTTTAAAAA AAAAAGAAAA AAGTAGGGCA chrII-NC_003071:17819771 47 2.77e-05 GTAGGGCAAT AAAAAGAAAA GGAGAATAAA chrV-NC_003076:3865585-3 115 3.02e-05 GTTTTGCCTA AAAAGGAAAG TTGTCAAGGA chrIV-NC_003075:12051681 82 3.02e-05 AAGAAACCAA AAAAGGAAAG AAGAAGAATC chrIV-NC_003075:272143-2 4 3.02e-05 ATC AGAGAGAGAG AGAGATTTTT chrI-NC_003070:12228596- 46 3.02e-05 AAACATGGCA AGAGAGAGAG GAGAGAAATT chrI-NC_003070:26043093- 42 3.02e-05 TATTAATGTA AGAGAGAGAG AGAAGTGAAA chrI-NC_003070:7930400-7 108 3.02e-05 GATTAGCCGA AAAAGGAAAG TATGAGATGC chrI-NC_003070:364212-36 172 3.02e-05 TAGAGAAAGA AGAGAGAGAG AGAGTTGGCG chrI-NC_003070:8166392-8 117 3.02e-05 AGATGCTATA AGAGAGAGAG GAAAGAAATG chrII-NC_003071:17508903 29 3.02e-05 ACAAAAGGGG AGAGAGAGAG AGAGAGTTGA chrIII-NC_003074:8943216 121 3.02e-05 TCATTGGGCT AGAGAGAGAG AGAGTATAAA chrIII-NC_003074:1773973 1 3.02e-05 . AGAGAGAGAG AGAGAGACGG chrIII-NC_003074:1976038 19 3.02e-05 AAATATGAAT AGAGAGAGAG ACTACACTAT chrV-NC_003076:18215713- 21 3.25e-05 AGAGAGACAG AGAGAGAAAG ATAGATTGAT chrV-NC_003076:10356668- 40 3.73e-05 AATAATAGCA AGAAAGAAAG CATTGGAGTG chrV-NC_003076:24239953- 54 4.31e-05 TGACTGATCG AAATAGAAAA TCACATATAT chrV-NC_003076:23391751- 59 4.31e-05 GAGACTCCCA AAATAGAAAA TTTGTACAAA chrV-NC_003076:7265855-7 39 4.31e-05 TGGCAAAAAA AAATAGAAAA TGTCTTTTCT chrV-NC_003076:2985446-2 1 4.31e-05 . AAATGGAGAG GACTGTTTTA chrI-NC_003070:29406817- 58 4.31e-05 TTAGGTCTAA AAATAGAAAA GAGTAGTAGT chrIII-NC_003074:1983705 81 4.31e-05 CCGATATAGA AAATAGAAAA TTGCACACTT chrV-NC_003076:15460593- 90 4.61e-05 TCACTTCTTA AAATGGAAAG TTAGTTACTC chrV-NC_003076:7524647-7 87 4.61e-05 ACTCTCACGT AAATGGAAAG CGCGTGTCTG chrIV-NC_003075:17395740 75 4.61e-05 AGATTTACAA AAATGGAAAG TCTTTGGACC chrI-NC_003070:25736387- 100 4.61e-05 AGATCAACAA AAATGGAAAG CAAAGACCAA chrI-NC_003070:16713584- 85 4.61e-05 GACAAACCAA AAATGGAAAG AAACAATTCT chrIII-NC_003074:2098810 32 4.61e-05 AGAAATTATC AAAGGGAGAA GGAGCGATCG chrII-NC_003071:641561-6 3 5.08e-05 AA AAAGGGAAAA ACACATTTCT chrIII-NC_003074:3003367 64 5.08e-05 TTATTTCCAA AAAGGGAAAA TCTAATGAAA chrII-NC_003071:8544091- 65 5.85e-05 TATTTTAGCT AAAAGGAAAA AGTGACACGT chrII-NC_003071:17975979 188 5.85e-05 TTACATTTAT AAAAGGAAAA AAC chrIII-NC_003074:2196946 39 5.85e-05 TGGTATTCTT AAAAGGAAAA AATGAGGGAC chrIV-NC_003075:16860561 113 6.84e-05 CCAAATCTTG AAAAAAAGAG TCATTTTTTC chrIV-NC_003075:18318587 172 6.84e-05 TTTCTTTGTG AAAGAAAAAG AAGAAGTTTA chrIII-NC_003074:1630167 76 6.84e-05 AGAGTCGCAG AGAAAGAGAA TAATAGAAAC chrV-NC_003076:26807915- 183 7.81e-05 AATAATTAAA AAAAAAAAAG CCTTTGCA chrIV-NC_003075:10600009 15 7.81e-05 GATAAAAATG AGAAAGAAAA ATAAGGAAGA chrIV-NC_003075:7349242- 169 7.81e-05 CTCCCAACCA AAAAAAAAAG ATAACTAATT chrIV-NC_003075:17397611 6 7.81e-05 AAATG AAAAAAAAAG GGGTAAATGG chrII-NC_003071:8760319- 7 7.81e-05 AAAAAA AAAAAAAAAG GCGATGATGA chrV-NC_003076:5962181-5 153 8.34e-05 TATTATTTGG AAGGAGAAAG CAATGTTATT chrV-NC_003076:25900220- 11 8.88e-05 TGACCAAAAG AAGAAGAAAG TGTGATTCTG chrIV-NC_003075:1494888- 150 8.88e-05 CCTGCAAATT AAGAAGAAAG AACTGGAGAA chrI-NC_003070:5968015-5 11 8.88e-05 GTTTATTATT AAAGAGCGAG GGAAAGAGAG chrV-NC_003076:24239588- 108 9.59e-05 TGGTCCTATC AAATAAAGAG TGTTGGTCCA chrI-NC_003070:28804880- 143 9.59e-05 TGGACGGGTA AAAAAGCGAG TACACAAAAA chrI-NC_003070:18942515- 150 1.10e-04 TAAAAAGAGC AAAGAAAGAA ACAACAAAGA chrII-NC_003071:14450955 57 1.10e-04 TCACTTCTAA AAATAAAAAG TGAAATTATT chrIII-NC_003074:1962057 61 1.10e-04 GATGGGCCGT AAATAAAAAG CCTAGTCACG chrV-NC_003076:25972709- 140 1.25e-04 TTATTATTTC AAAAAGACAG ATGACCTAAC chrV-NC_003076:973984-97 66 1.42e-04 TGATTTGGTG AAGGAGAGAA AGTGGTGACG chrV-NC_003076:14755579- 90 1.42e-04 GTCTTCAATG AAAAAAAAAA CCATTTATCC chrIV-NC_003075:11971410 23 1.42e-04 TTTTTTACAC AAAAAAAAAA AAAAACAATT chrI-NC_003070:6899616-6 175 1.42e-04 CAAAAGTTAC AAAGGAAAAG CTGTGGACCT chrI-NC_003070:23412259- 188 1.42e-04 TCTCAGCAAT AAAAAAAAAA ATG chrI-NC_003070:24732448- 3 1.42e-04 AA AGAAGGAGAA TTATGGGATT chrII-NC_003071:16505491 116 1.42e-04 AAGAGGAAGA AGAAGGAGAA GAAGAAGAAG chrII-NC_003071:15099380 43 1.42e-04 CCAATCAACC AAAAAAAAAA ACTCGTCTTT chrI-NC_003070:7930555-7 122 1.53e-04 GACCTGTTCT AGAGAAAGAG GTGCGTTATT chrIII-NC_003074:4606158 51 1.53e-04 TAATAAAAAC AAGAAGAGAA TAGATGATGA chrII-NC_003071:10628311 98 1.64e-04 ATATTTCCAA AAATAGCAAG TTCTTGTAAT chrIV-NC_003075:17798664 64 1.82e-04 TGATAAGCAA AAATAGACAG AAGATGACAG chrII-NC_003071:11689161 43 1.82e-04 TGTGTGTTAT AAAGAGCAAA CACTTGATAT chrII-NC_003071:17189231 161 1.82e-04 CCAAGCTTTA AAATAAAGAA AGTTCTTAAA chrIII-NC_003074:7503344 122 1.82e-04 CAATAATGGA AGGGAGAGAG CAAGAGCCAA chrIV-NC_003075:12769653 115 2.02e-04 GCACATGGCC ACAAAGAAAG TTGGTTAGTT chrI-NC_003070:28467619- 80 2.02e-04 TCCTTTTCCT AAAGAGACAA ATTTGCCCCT chrI-NC_003070:22877423- 114 2.02e-04 ATTAATAAGC AAATAAAAAA CACACCAAAC chrIII-NC_003074:4358519 44 2.02e-04 ATTCTGGAGG AAATAAAAAA ACAAAAACAA chrIII-NC_003074:1395996 3 2.02e-04 AA ACAAAGAAAG CTGGGCCATG chrI-NC_003070:28143859- 69 2.16e-04 GATATAATGC AAAAAGACAA AAGAGAGTTG chrI-NC_003070:21517777- 103 2.16e-04 AAGAATCTAT AAAAGGCAAG TAAAATCAGA chrI-NC_003070:10353875- 6 2.16e-04 TTGAG AAAAAGACAA GCTCTAATTT chrV-NC_003076:25086812- 141 2.30e-04 CTCCGGATAT AGAAAGCGAG GATCTAGGAC chrIV-NC_003075:17409244 158 2.30e-04 ATTTACATAA AAGTAGAAAA TCTCGTGGTC chrI-NC_003070:29399321- 86 2.30e-04 GAAAAAGAAT AAAAGAAGAA GACTTACTAT chrV-NC_003076:9133236-9 141 2.46e-04 TTCTTGCCGA AAGTGGAAAG AAAGATATGG chrI-NC_003070:24760580- 117 2.46e-04 GATGAATCCA AAGTGGAAAG TATTGGACCC chrII-NC_003071:12326803 14 2.46e-04 TCTCCAACAT AAAAGAAAAA CACTTACTTA chrIII-NC_003074:2016186 50 2.46e-04 TATTAGGGAC ACATAGAGAG ACGTACACGG chrIV-NC_003075:11425880 8 2.84e-04 AATAAAC ACAAAGAGAA TCCAATACGC chrV-NC_003076:3857021-3 39 3.04e-04 GGTTTCCCCC AAATGAAGAA AGGAGGAATC chrV-NC_003076:7266265-7 133 3.04e-04 TGGGAATTTA AGGAAGAGAA TCCATATGAC chrI-NC_003070:20084599- 169 3.04e-04 TTGTAGTACA AAATGAAGAA AGGATGACGA chrI-NC_003070:18627576- 185 3.04e-04 CAACGTCGAA AAAGGGCAAA CATCGA chrIII-NC_003074:1945323 159 3.35e-04 AGCTGACCAA AAAAAACGAG CATCTACGTT chrIII-NC_003074:1138696 182 3.35e-04 TTTTTTATTC AGATAAAGAA AATGAGTGT chrV-NC_003076:9628962-9 155 3.53e-04 TTCTATTTCC AGATAAAAAA ACTTTACTCA chrIII-NC_003074:2098821 40 3.88e-04 AAATTGGGGA AGAAGAAGAA GAAGGCTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:24953160- 1.1e-06 11_[+2]_179 chrII-NC_003071:19100983 1.1e-06 110_[+2]_80 chrIII-NC_003074:2012113 1.1e-06 42_[+2]_148 chrV-NC_003076:23785171- 4.8e-06 172_[+2]_18 chrII-NC_003071:12946397 4.8e-06 129_[+2]_61 chrII-NC_003071:12321522 4.8e-06 64_[+2]_126 chrIII-NC_003074:2056022 4.8e-06 165_[+2]_25 chrV-NC_003076:266618-26 7.7e-06 174_[+2]_16 chrIV-NC_003075:13017928 7.7e-06 46_[+2]_144 chrI-NC_003070:21043046- 7.7e-06 76_[+2]_114 chrIV-NC_003075:13854216 1.4e-05 117_[+2]_73 chrIV-NC_003075:8100451- 1.4e-05 127_[+2]_63 chrIV-NC_003075:13023435 1.4e-05 167_[+2]_23 chrI-NC_003070:8598740-8 1.4e-05 134_[+2]_56 chrI-NC_003070:20876436- 1.4e-05 101_[+2]_89 chrI-NC_003070:3108015-3 1.4e-05 66_[+2]_124 chrIII-NC_003074:5470385 1.4e-05 58_[+2]_132 chrIII-NC_003074:8943976 1.4e-05 93_[+2]_97 chrV-NC_003076:24935013- 2.1e-05 49_[+2]_141 chrI-NC_003070:28315795- 2.1e-05 4_[+2]_186 chrI-NC_003070:27294385- 2.1e-05 9_[+2]_181 chrIII-NC_003074:4340381 2.1e-05 66_[+2]_124 chrIII-NC_003074:1927636 2.1e-05 37_[+2]_153 chrV-NC_003076:756609-75 2.8e-05 190_[+2] chrV-NC_003076:21723045- 2.8e-05 16_[+2]_174 chrII-NC_003071:18423231 2.8e-05 125_[+2]_65 chrII-NC_003071:17819771 2.8e-05 46_[+2]_144 chrV-NC_003076:3865585-3 3e-05 114_[+2]_76 chrIV-NC_003075:12051681 3e-05 81_[+2]_109 chrIV-NC_003075:272143-2 3e-05 3_[+2]_187 chrI-NC_003070:12228596- 3e-05 45_[+2]_145 chrI-NC_003070:26043093- 3e-05 41_[+2]_149 chrI-NC_003070:7930400-7 3e-05 107_[+2]_83 chrI-NC_003070:364212-36 3e-05 171_[+2]_19 chrI-NC_003070:8166392-8 3e-05 116_[+2]_74 chrII-NC_003071:17508903 3e-05 28_[+2]_162 chrIII-NC_003074:8943216 3e-05 120_[+2]_70 chrIII-NC_003074:1773973 3e-05 [+2]_190 chrIII-NC_003074:1976038 3e-05 18_[+2]_172 chrV-NC_003076:18215713- 3.3e-05 20_[+2]_170 chrV-NC_003076:10356668- 3.7e-05 39_[+2]_151 chrV-NC_003076:24239953- 4.3e-05 53_[+2]_137 chrV-NC_003076:23391751- 4.3e-05 58_[+2]_132 chrV-NC_003076:7265855-7 4.3e-05 38_[+2]_152 chrV-NC_003076:2985446-2 4.3e-05 [+2]_190 chrI-NC_003070:29406817- 4.3e-05 57_[+2]_133 chrIII-NC_003074:1983705 4.3e-05 80_[+2]_110 chrV-NC_003076:15460593- 4.6e-05 89_[+2]_101 chrV-NC_003076:7524647-7 4.6e-05 86_[+2]_104 chrIV-NC_003075:17395740 4.6e-05 74_[+2]_116 chrI-NC_003070:25736387- 4.6e-05 99_[+2]_91 chrI-NC_003070:16713584- 4.6e-05 84_[+2]_106 chrIII-NC_003074:2098810 4.6e-05 31_[+2]_159 chrII-NC_003071:641561-6 5.1e-05 2_[+2]_188 chrIII-NC_003074:3003367 5.1e-05 63_[+2]_127 chrII-NC_003071:8544091- 5.9e-05 64_[+2]_126 chrII-NC_003071:17975979 5.9e-05 187_[+2]_3 chrIII-NC_003074:2196946 5.9e-05 38_[+2]_152 chrIV-NC_003075:16860561 6.8e-05 112_[+2]_78 chrIV-NC_003075:18318587 6.8e-05 171_[+2]_19 chrIII-NC_003074:1630167 6.8e-05 75_[+2]_115 chrV-NC_003076:26807915- 7.8e-05 182_[+2]_8 chrIV-NC_003075:10600009 7.8e-05 14_[+2]_176 chrIV-NC_003075:7349242- 7.8e-05 168_[+2]_22 chrIV-NC_003075:17397611 7.8e-05 5_[+2]_185 chrII-NC_003071:8760319- 7.8e-05 6_[+2]_184 chrV-NC_003076:5962181-5 8.3e-05 152_[+2]_38 chrV-NC_003076:25900220- 8.9e-05 10_[+2]_180 chrIV-NC_003075:1494888- 8.9e-05 149_[+2]_41 chrI-NC_003070:5968015-5 8.9e-05 10_[+2]_180 chrV-NC_003076:24239588- 9.6e-05 107_[+2]_83 chrI-NC_003070:28804880- 9.6e-05 142_[+2]_48 chrI-NC_003070:18942515- 0.00011 149_[+2]_41 chrII-NC_003071:14450955 0.00011 56_[+2]_134 chrIII-NC_003074:1962057 0.00011 60_[+2]_130 chrV-NC_003076:25972709- 0.00013 139_[+2]_51 chrV-NC_003076:973984-97 0.00014 65_[+2]_125 chrV-NC_003076:14755579- 0.00014 89_[+2]_101 chrIV-NC_003075:11971410 0.00014 22_[+2]_168 chrI-NC_003070:6899616-6 0.00014 174_[+2]_16 chrI-NC_003070:23412259- 0.00014 187_[+2]_3 chrI-NC_003070:24732448- 0.00014 2_[+2]_188 chrII-NC_003071:16505491 0.00014 115_[+2]_75 chrII-NC_003071:15099380 0.00014 42_[+2]_148 chrI-NC_003070:7930555-7 0.00015 121_[+2]_69 chrIII-NC_003074:4606158 0.00015 50_[+2]_140 chrII-NC_003071:10628311 0.00016 97_[+2]_93 chrIV-NC_003075:17798664 0.00018 63_[+2]_127 chrII-NC_003071:11689161 0.00018 42_[+2]_148 chrII-NC_003071:17189231 0.00018 160_[+2]_30 chrIII-NC_003074:7503344 0.00018 121_[+2]_69 chrIV-NC_003075:12769653 0.0002 114_[+2]_76 chrI-NC_003070:28467619- 0.0002 79_[+2]_111 chrI-NC_003070:22877423- 0.0002 113_[+2]_77 chrIII-NC_003074:4358519 0.0002 43_[+2]_147 chrIII-NC_003074:1395996 0.0002 2_[+2]_188 chrI-NC_003070:28143859- 0.00022 68_[+2]_122 chrI-NC_003070:21517777- 0.00022 102_[+2]_88 chrI-NC_003070:10353875- 0.00022 5_[+2]_185 chrV-NC_003076:25086812- 0.00023 140_[+2]_50 chrIV-NC_003075:17409244 0.00023 157_[+2]_33 chrI-NC_003070:29399321- 0.00023 85_[+2]_105 chrV-NC_003076:9133236-9 0.00025 140_[+2]_50 chrI-NC_003070:24760580- 0.00025 116_[+2]_74 chrII-NC_003071:12326803 0.00025 13_[+2]_177 chrIII-NC_003074:2016186 0.00025 49_[+2]_141 chrIV-NC_003075:11425880 0.00028 7_[+2]_183 chrV-NC_003076:3857021-3 0.0003 38_[+2]_152 chrV-NC_003076:7266265-7 0.0003 132_[+2]_58 chrI-NC_003070:20084599- 0.0003 168_[+2]_22 chrI-NC_003070:18627576- 0.0003 184_[+2]_6 chrIII-NC_003074:1945323 0.00033 158_[+2]_32 chrIII-NC_003074:1138696 0.00033 181_[+2]_9 chrV-NC_003076:9628962-9 0.00035 154_[+2]_36 chrIII-NC_003074:2098821 0.00039 39_[+2]_151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=10 seqs=115 chrV-NC_003076:24953160- ( 12) AAAGAGAGAG 1 chrII-NC_003071:19100983 ( 111) AAAGAGAGAG 1 chrIII-NC_003074:2012113 ( 43) AAAGAGAGAG 1 chrV-NC_003076:23785171- ( 173) AAAAAGAGAG 1 chrII-NC_003071:12946397 ( 130) AAAGAGAAAG 1 chrII-NC_003071:12321522 ( 65) AAAGAGAAAG 1 chrIII-NC_003074:2056022 ( 166) AAAAAGAGAG 1 chrV-NC_003076:266618-26 ( 175) AAAAAGAAAG 1 chrIV-NC_003075:13017928 ( 47) AAAAAGAAAG 1 chrI-NC_003070:21043046- ( 77) AAAAAGAAAG 1 chrIV-NC_003075:13854216 ( 118) AAATAGAAAG 1 chrIV-NC_003075:8100451- ( 128) AAATAGAAAG 1 chrIV-NC_003075:13023435 ( 168) AAATAGAAAG 1 chrI-NC_003070:8598740-8 ( 135) AAATAGAAAG 1 chrI-NC_003070:20876436- ( 102) AAATAGAAAG 1 chrI-NC_003070:3108015-3 ( 67) AAATAGAAAG 1 chrIII-NC_003074:5470385 ( 59) AAAGAGAGAA 1 chrIII-NC_003074:8943976 ( 94) AAAGAGAGAA 1 chrV-NC_003076:24935013- ( 50) AAAAAGAGAA 1 chrI-NC_003070:28315795- ( 5) AAAAAGAGAA 1 chrI-NC_003070:27294385- ( 10) AAAAAGAGAA 1 chrIII-NC_003074:4340381 ( 67) AAAGAGAAAA 1 chrIII-NC_003074:1927636 ( 38) AAAAAGAGAA 1 chrV-NC_003076:756609-75 ( 191) AAAAAGAAAA 1 chrV-NC_003076:21723045- ( 17) AAAAAGAAAA 1 chrII-NC_003071:18423231 ( 126) AAAAAGAAAA 1 chrII-NC_003071:17819771 ( 47) AAAAAGAAAA 1 chrV-NC_003076:3865585-3 ( 115) AAAAGGAAAG 1 chrIV-NC_003075:12051681 ( 82) AAAAGGAAAG 1 chrIV-NC_003075:272143-2 ( 4) AGAGAGAGAG 1 chrI-NC_003070:12228596- ( 46) AGAGAGAGAG 1 chrI-NC_003070:26043093- ( 42) AGAGAGAGAG 1 chrI-NC_003070:7930400-7 ( 108) AAAAGGAAAG 1 chrI-NC_003070:364212-36 ( 172) AGAGAGAGAG 1 chrI-NC_003070:8166392-8 ( 117) AGAGAGAGAG 1 chrII-NC_003071:17508903 ( 29) AGAGAGAGAG 1 chrIII-NC_003074:8943216 ( 121) AGAGAGAGAG 1 chrIII-NC_003074:1773973 ( 1) AGAGAGAGAG 1 chrIII-NC_003074:1976038 ( 19) AGAGAGAGAG 1 chrV-NC_003076:18215713- ( 21) AGAGAGAAAG 1 chrV-NC_003076:10356668- ( 40) AGAAAGAAAG 1 chrV-NC_003076:24239953- ( 54) AAATAGAAAA 1 chrV-NC_003076:23391751- ( 59) AAATAGAAAA 1 chrV-NC_003076:7265855-7 ( 39) AAATAGAAAA 1 chrV-NC_003076:2985446-2 ( 1) AAATGGAGAG 1 chrI-NC_003070:29406817- ( 58) AAATAGAAAA 1 chrIII-NC_003074:1983705 ( 81) AAATAGAAAA 1 chrV-NC_003076:15460593- ( 90) AAATGGAAAG 1 chrV-NC_003076:7524647-7 ( 87) AAATGGAAAG 1 chrIV-NC_003075:17395740 ( 75) AAATGGAAAG 1 chrI-NC_003070:25736387- ( 100) AAATGGAAAG 1 chrI-NC_003070:16713584- ( 85) AAATGGAAAG 1 chrIII-NC_003074:2098810 ( 32) AAAGGGAGAA 1 chrII-NC_003071:641561-6 ( 3) AAAGGGAAAA 1 chrIII-NC_003074:3003367 ( 64) AAAGGGAAAA 1 chrII-NC_003071:8544091- ( 65) AAAAGGAAAA 1 chrII-NC_003071:17975979 ( 188) AAAAGGAAAA 1 chrIII-NC_003074:2196946 ( 39) AAAAGGAAAA 1 chrIV-NC_003075:16860561 ( 113) AAAAAAAGAG 1 chrIV-NC_003075:18318587 ( 172) AAAGAAAAAG 1 chrIII-NC_003074:1630167 ( 76) AGAAAGAGAA 1 chrV-NC_003076:26807915- ( 183) AAAAAAAAAG 1 chrIV-NC_003075:10600009 ( 15) AGAAAGAAAA 1 chrIV-NC_003075:7349242- ( 169) AAAAAAAAAG 1 chrIV-NC_003075:17397611 ( 6) AAAAAAAAAG 1 chrII-NC_003071:8760319- ( 7) AAAAAAAAAG 1 chrV-NC_003076:5962181-5 ( 153) AAGGAGAAAG 1 chrV-NC_003076:25900220- ( 11) AAGAAGAAAG 1 chrIV-NC_003075:1494888- ( 150) AAGAAGAAAG 1 chrI-NC_003070:5968015-5 ( 11) AAAGAGCGAG 1 chrV-NC_003076:24239588- ( 108) AAATAAAGAG 1 chrI-NC_003070:28804880- ( 143) AAAAAGCGAG 1 chrI-NC_003070:18942515- ( 150) AAAGAAAGAA 1 chrII-NC_003071:14450955 ( 57) AAATAAAAAG 1 chrIII-NC_003074:1962057 ( 61) AAATAAAAAG 1 chrV-NC_003076:25972709- ( 140) AAAAAGACAG 1 chrV-NC_003076:973984-97 ( 66) AAGGAGAGAA 1 chrV-NC_003076:14755579- ( 90) AAAAAAAAAA 1 chrIV-NC_003075:11971410 ( 23) AAAAAAAAAA 1 chrI-NC_003070:6899616-6 ( 175) AAAGGAAAAG 1 chrI-NC_003070:23412259- ( 188) AAAAAAAAAA 1 chrI-NC_003070:24732448- ( 3) AGAAGGAGAA 1 chrII-NC_003071:16505491 ( 116) AGAAGGAGAA 1 chrII-NC_003071:15099380 ( 43) AAAAAAAAAA 1 chrI-NC_003070:7930555-7 ( 122) AGAGAAAGAG 1 chrIII-NC_003074:4606158 ( 51) AAGAAGAGAA 1 chrII-NC_003071:10628311 ( 98) AAATAGCAAG 1 chrIV-NC_003075:17798664 ( 64) AAATAGACAG 1 chrII-NC_003071:11689161 ( 43) AAAGAGCAAA 1 chrII-NC_003071:17189231 ( 161) AAATAAAGAA 1 chrIII-NC_003074:7503344 ( 122) AGGGAGAGAG 1 chrIV-NC_003075:12769653 ( 115) ACAAAGAAAG 1 chrI-NC_003070:28467619- ( 80) AAAGAGACAA 1 chrI-NC_003070:22877423- ( 114) AAATAAAAAA 1 chrIII-NC_003074:4358519 ( 44) AAATAAAAAA 1 chrIII-NC_003074:1395996 ( 3) ACAAAGAAAG 1 chrI-NC_003070:28143859- ( 69) AAAAAGACAA 1 chrI-NC_003070:21517777- ( 103) AAAAGGCAAG 1 chrI-NC_003070:10353875- ( 6) AAAAAGACAA 1 chrV-NC_003076:25086812- ( 141) AGAAAGCGAG 1 chrIV-NC_003075:17409244 ( 158) AAGTAGAAAA 1 chrI-NC_003070:29399321- ( 86) AAAAGAAGAA 1 chrV-NC_003076:9133236-9 ( 141) AAGTGGAAAG 1 chrI-NC_003070:24760580- ( 117) AAGTGGAAAG 1 chrII-NC_003071:12326803 ( 14) AAAAGAAAAA 1 chrIII-NC_003074:2016186 ( 50) ACATAGAGAG 1 chrIV-NC_003075:11425880 ( 8) ACAAAGAGAA 1 chrV-NC_003076:3857021-3 ( 39) AAATGAAGAA 1 chrV-NC_003076:7266265-7 ( 133) AGGAAGAGAA 1 chrI-NC_003070:20084599- ( 169) AAATGAAGAA 1 chrI-NC_003070:18627576- ( 185) AAAGGGCAAA 1 chrIII-NC_003074:1945323 ( 159) AAAAAACGAG 1 chrIII-NC_003074:1138696 ( 182) AGATAAAGAA 1 chrV-NC_003076:9628962-9 ( 155) AGATAAAAAA 1 chrIII-NC_003074:2098821 ( 40) AGAAGAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 10.7984 E= 7.6e-025 170 -1349 -1349 -1349 133 -246 -1 -1349 157 -1349 -115 -1349 50 -1349 53 -11 132 -1349 29 -1349 -39 -1349 199 -1349 160 -146 -1349 -1349 88 -214 102 -1349 170 -1349 -1349 -1349 53 -1349 153 -1349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 115 E= 7.6e-025 1.000000 0.000000 0.000000 0.000000 0.773913 0.034783 0.191304 0.000000 0.913043 0.000000 0.086957 0.000000 0.434783 0.000000 0.278261 0.286957 0.765217 0.000000 0.234783 0.000000 0.234783 0.000000 0.765217 0.000000 0.930435 0.069565 0.000000 0.000000 0.565217 0.043478 0.391304 0.000000 1.000000 0.000000 0.000000 0.000000 0.443478 0.000000 0.556522 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- AAA[ATG][AG][GA]A[AG]A[GA] -------------------------------------------------------------------------------- Time 132.22 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 10 sites = 155 llr = 1217 E-value = 4.2e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :::::1:::: pos.-specific C :3:642:412 probability G :::::2::1: matrix T a7a465a678 bits 2.4 2.1 1.9 1.7 * * * Relative 1.4 * * * Entropy 1.2 * ** * (11.3 bits) 1.0 ***** ** * 0.7 ***** **** 0.5 ***** **** 0.2 ********** 0.0 ---------- Multilevel TTTCTTTTTT consensus C TCC C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:25158624- 171 3.06e-06 CACATGGCTG TTTCTTTCTT ATGTTGAGAG chrV-NC_003076:900190-90 156 3.06e-06 TAAGATTCGA TTTCTTTCTT TTTTCAGCAA chrV-NC_003076:7673076-7 5 3.06e-06 CTCC TTTCTTTCTT TAGTTAAGAG chrV-NC_003076:7265855-7 54 3.06e-06 GAAAATGTCT TTTCTTTCTT TCATTAAACT chrII-NC_003071:7934198- 68 3.06e-06 GTAACGTTTT TTTCTTTCTT TCTTCTCTCT chrV-NC_003076:7266265-7 98 9.90e-06 ATAAATTTAC TTTCTTTTTT GGGCATGGGG chrIV-NC_003075:17334368 180 9.90e-06 AATTCGGATC TTTCCTTCTT CTTTTTTTTC chrIV-NC_003075:17048860 156 9.90e-06 TAATTGTTAC TTTCTTTTTT GGTCAGTTGG chrIV-NC_003075:8203258- 89 9.90e-06 ACCCCTTTAC TTTCTTTTTT TTCTGGTGGT chrI-NC_003070:26097575- 73 9.90e-06 TCAACGCGTC TTTCCTTCTT GATTCTGTTA chrI-NC_003070:8596542-8 178 9.90e-06 TTTATAAATT TTTCTTTTTT ACTTATAAAA chrI-NC_003070:23238411- 115 9.90e-06 TGTATCGTGC TTTCTTTTTT GGGTCGTCGA chrII-NC_003071:19015799 47 9.90e-06 TTTTTCTTCC TTTCTTTTTT GGATTCTCCT chrII-NC_003071:8760319- 130 9.90e-06 GACAAAACCG TTTCTTTTTT GGGCGTTAGT chrIII-NC_003074:2214119 10 9.90e-06 ACGTTTTCA TTTCTTTTTT CGATTTAGTA chrV-NC_003076:5962181-5 113 1.30e-05 TCTCTATAGT TTTCCTTTTT GGGCAATGTA chrV-NC_003076:7960250-7 55 1.30e-05 TCTTTACTTT TTTCCTTTTT CAACTCGCAT chrV-NC_003076:26807915- 75 1.30e-05 TGCATTTTTC TTTCCTTTTT CATGATAGCA chrI-NC_003070:25320229- 97 1.30e-05 AAAATTCAAG TTTCCTTTTT TAGATTTTGA chrI-NC_003070:21517777- 126 1.30e-05 AATCAGAAAG TTTCCTTTTT TAGAAACTAT chrI-NC_003070:23734604- 90 1.30e-05 GTATCAGAGC TTTCCTTTTT TAGAACTATC chrI-NC_003070:11472862- 109 1.30e-05 GATTCTGAAG TTTCCTTTTT TGTTTTGAAA chrI-NC_003070:24331613- 185 1.30e-05 TAGAAATTAT TTTCCTTTTT TGGGGT chrII-NC_003071:13036795 47 1.30e-05 GTGTCTCTCA TTTCCTTTTT TGACTCTTCT chrII-NC_003071:8813586- 90 1.30e-05 AGCAGAGTAC TTTCCTTTTT AACCGAACCA chrII-NC_003071:19114215 139 1.30e-05 AAGGCTTCCC TTTCCTTTTT TAACGGATAA chrII-NC_003071:13036732 110 1.30e-05 GTGTCTCTCA TTTCCTTTTT TGACTCTTCT chrIII-NC_003074:5216309 97 1.30e-05 GCAAAAGAAT TTTCCTTTTT TGGTTTCTCT chrIII-NC_003074:5216276 130 1.30e-05 GCAAAAGAAT TTTCCTTTTT TGGTTTCTCT chrV-NC_003076:5177754-5 36 1.68e-05 CTACTTTTTC TCTCTTTCTT CCTCAATAAG chrI-NC_003070:27294385- 126 1.68e-05 TATGGAATGT TTTCTCTCTT CCGCTTCCTT chrIV-NC_003075:7369585- 159 2.53e-05 AGATCTGTCT TCTCTTTTTT GTCTTTCTCT chrII-NC_003071:14193902 74 2.53e-05 ACGGGTCCAC TTTCTCTTTT ACCCAAATAT chrII-NC_003071:17819771 130 2.53e-05 AGCCCATACC TCTCTTTTTT CCTCTAAACA chrIII-NC_003074:2098821 79 2.53e-05 AGGACGTTGG TCTCCTTCTT CACCCACTTG chrII-NC_003071:16111201 79 3.10e-05 CGATCGAAAA TTTCCCTTTT TGAGAAATGT chrIII-NC_003074:1722372 119 3.10e-05 TCCAACATTG TTTCCCTTTT GAACCACCTG chrIII-NC_003074:1876334 108 3.10e-05 TAAAAATAAC TCTCCTTTTT TGTTTGTTCA chrV-NC_003076:26155-263 158 4.45e-05 GCTTTCTCTC TCTCTCTCTT CTCATACTTC chrIV-NC_003075:13023617 122 4.45e-05 GGAACCCATC TTTCTGTTTT TGGAAAATCG chrIV-NC_003075:13854216 76 4.45e-05 CTTTTATAGC TTTCCTTTTC AGGAAAGTAT chrI-NC_003070:1143756-1 110 4.45e-05 AAGCTTACTA TTTCCGTCTT TCCACGCTAT chrI-NC_003070:6174672-6 144 4.45e-05 ATTTCTGCTT TCTCTCTCTT TTTCGTCTTC chrI-NC_003070:1143820-1 46 4.45e-05 AAGCTTACTA TTTCCGTCTT TCCACGCTAT chrI-NC_003070:28955713- 163 4.45e-05 AAGAAGATAC TTTCCTTTTC TGGGTCTCAC chrII-NC_003071:9580055- 134 4.45e-05 CTTGTCACTC TCTCTCTCTT CTTTAAAGTC chrIII-NC_003074:1009490 44 4.45e-05 GTTCTTTTTT TTTCCTTTTC TAAAATACCA chrV-NC_003076:26805534- 103 5.39e-05 AAAAACTCCC TCTCCCTCTT TCTCTCTACG chrV-NC_003076:24239588- 136 5.39e-05 CAAGATGATT TTTTTTTCTT TTTGACAGCA chrIV-NC_003075:17736542 158 5.39e-05 GGTTGTTGAC TTTTTTTCTT ATGTCGTTGT chrIV-NC_003075:18318587 158 5.39e-05 GTGATTTTAT TTTTTTTCTT TGTGAAAGAA chrI-NC_003070:28315795- 129 5.39e-05 TTTGACAAAC TTTTTTTCTT GGACCACTAA chrI-NC_003070:5137983-5 3 5.39e-05 TT TTTTTTTCTT TGATGAATTT chrIII-NC_003074:1630167 100 5.39e-05 AGAAACCCGG TTTCCGTTTT TAGTAATGTT chrIII-NC_003074:2025163 11 5.39e-05 ACAAATTGTT TTTTTTTCTT TGATCGTTCA chrIII-NC_003074:2196946 7 5.39e-05 TTCCCC TTTTTTTCTT TCCTTCTAAT chrV-NC_003076:15997367- 1 6.85e-05 . TTTTTTTTTT GGTTGTGTAT chrV-NC_003076:756609-75 76 6.85e-05 TAATAACCTC TTTTTTTTTT CTAATTTTGG chrV-NC_003076:9515557-9 146 6.85e-05 TCCCCACATT TTTCTCTCTC CTTTATTATG chrV-NC_003076:21437588- 71 6.85e-05 AATCTTTCTA TTTCTCTCTC TCTCTCTCTC chrV-NC_003076:10356668- 17 6.85e-05 TGGTTAAAGA TTTTTTTTTT AAAAATAATA chrIV-NC_003075:12769653 35 6.85e-05 ACTTTCAAAG TTTTCTTCTT CCTTTCGTTC chrI-NC_003070:22512251- 1 6.85e-05 . TTTTTTTTTT TGGTGGATTC chrI-NC_003070:24760580- 5 6.85e-05 AAGC TTTTTTTTTT TTTTTTTGAT chrII-NC_003071:18188065 99 6.85e-05 GTGTAACATA TCTCTTTCTC TGTAAGGTGT chrIII-NC_003074:665060- 73 6.85e-05 TTAGACTACA TTTTTTTTTT TTGGGGGCAA chrIV-NC_003075:14266719 138 8.18e-05 ATGGGCCCAA TTTTCTTTTT AAAGCCAAAC chrI-NC_003070:6746757-6 144 8.18e-05 CTTTGCTAGA TCTCTTTTTC TCTGTTTTGA chrI-NC_003070:22343054- 172 8.18e-05 TAATTTTTTT TCTCCTTCTC CCCGGCGAAT chrIII-NC_003074:5236683 143 8.18e-05 TTTAGAATCA TTTCTTTCCT AAAATAGTAA chrIII-NC_003074:5236747 79 8.18e-05 TTTAGAATCA TTTCTTTCCT AAAATAGTAA chrIII-NC_003074:611194- 124 8.18e-05 TATTTGCAAC TCTCTGTCTT CTCTACTACG chrI-NC_003070:4132322-4 127 9.29e-05 TTTGCCGTAC TTTCTTTCGT CAAGCTTGAC chrII-NC_003071:17508903 166 9.29e-05 TCTTCTTTAG TTTCTTTTCT AACCTTTTTT chrIII-NC_003074:2115360 169 9.29e-05 GCACAAATAG TCTCTGTTTT TTGAAACTCG chrV-NC_003076:5011856-5 177 1.08e-04 TTAAATTAAT TTTCCTTTCT TCTCTGCTAC chrIV-NC_003075:9443322- 57 1.08e-04 CGGACACACC TTTCTTTTGT TAGACGCAGT chrIV-NC_003075:13016235 78 1.08e-04 GAACGCGGAG TTTCTGTCTC TGTGAATGCC chrIV-NC_003075:2661596- 118 1.08e-04 CGTCTTCGTC TTTTTCTCTT CACCAAAAAC chrIV-NC_003075:11604485 140 1.08e-04 TTTAAAGTGT TTTTTCTCTT CCCCCGACAA chrV-NC_003076:973984-97 44 1.27e-04 TTCACTTAGC TCTCTCTCTC TGTGATTTGG chrV-NC_003076:16451031- 187 1.27e-04 TCTCCTCTAA TCTTCTTCTT TAGT chrV-NC_003076:20781642- 61 1.27e-04 GCGGTTCGGT TCTTCTTCTT CTTCTTCCTC chrV-NC_003076:24935013- 3 1.27e-04 CT TTTTTCTTTT CCAGAATTAG chrIV-NC_003075:10600009 129 1.27e-04 TATCTATATG TTTCCTTTGT TGTTCTTTTC chrIV-NC_003075:17535190 16 1.27e-04 AATATATAAT TCTTTTTTTT ATTTCTGCAG chrI-NC_003070:28292956- 58 1.27e-04 TTCTTAGAGT TTTCTGTTTC CTTATTTGGG chrI-NC_003070:3108015-3 158 1.27e-04 CAATTCCAAA TCTCTCTCTC TCTCTCTCTC chrI-NC_003070:25743975- 168 1.27e-04 CTTTGCCAAT TCTTCTTCTT CTTCTTCCTT chrI-NC_003070:7930400-7 37 1.27e-04 GGATCTTGAA TCTTCTTCTT GTTCTGTTTT chrII-NC_003071:15099380 158 1.27e-04 TTTCCACGAC TCTCTCTCTC TCTCTCTCTC chrIII-NC_003074:4732955 106 1.27e-04 CGTAACTTAG TCTTCTTCTT AGGGGTATTA chrV-NC_003076:9480398-9 165 1.44e-04 TCTCTCCCAC TCTCCCTCTC ACGCGACCTG chrV-NC_003076:8359800-8 168 1.44e-04 AGACTAAATA TCTTCTTTTT TCCTTGTCTC chrIV-NC_003075:13475395 28 1.44e-04 GCGATTGACA TCTCTCTTTC CTTGTCTTTG chrII-NC_003071:18749207 107 1.44e-04 ATTACCCATC TCTTCTTTTT TGAAGAGTAT chrI-NC_003070:7930555-7 56 1.69e-04 TTTCGCTTGT TTTCTATTTT AAGAGTTAAG chrI-NC_003070:26038263- 92 1.69e-04 AGACACATTA TTTCTATTTT GAAAAGAATA chrII-NC_003071:14450955 169 1.69e-04 CTCTACTCTG TTTTCTTCTC GTAAACAGAA chrII-NC_003071:12849576 20 1.69e-04 GGATCGGAAG TTTCTATTTT TGTGTATATA chrIII-NC_003074:2144865 22 1.69e-04 GAATGACGCT TTTTCTTCTC ACTACCATCA chrV-NC_003076:22649608- 177 1.93e-04 AACAACCAAA TTTTTGTTTT TCCAAAACAA chrIV-NC_003075:14331411 128 1.93e-04 GTGAATACAG TTTTTGTTTT AAGCCCATTT chrIV-NC_003075:17798664 155 1.93e-04 GTTTTATACT TTTCTCTTGT AAACTAAAAA chrI-NC_003070:17253659- 73 1.93e-04 TATTTCAGAG TTTCTCTTGT GACACGACTT chrIII-NC_003074:822690- 85 1.93e-04 GGTGCATGCT TTTCCATTTT TAGTCATTTG chrV-NC_003076:7833316-7 68 2.10e-04 TGGACCCAAC TCTTCCTCTT TGATCATTAG chrII-NC_003071:17975979 162 2.10e-04 TGGTCCAATG TTTCTTTCGC TTGGACTTAC chrII-NC_003071:7935107- 136 2.10e-04 TCATTCAGTT TCTTCCTCTT CTTTCCAGAA chrIV-NC_003075:16256073 25 2.26e-04 CCCCAAACTG TTTCTGTTCT GTAGTGTTCT chrIV-NC_003075:16613081 179 2.26e-04 ACTCCAAAAG TTTCTTTTGC GATGCTTTGA chrII-NC_003071:8544091- 4 2.26e-04 TCT TTTCTGTTCT CAATTTTATT chrV-NC_003076:25972709- 181 2.52e-04 TGTATGGACT TTTTTTTCCT TCAAATTATA chrIV-NC_003075:13023435 52 2.52e-04 GACAAAAATA TCTCTCTCGT TACCTCTCGC chrIV-NC_003075:33765-33 117 2.52e-04 GATAGTGTTT TTTCTGTTGT TTTTGTAAAG chrI-NC_003070:25877584- 12 2.52e-04 ATACATGAAG TCTTTGTCTT CTTACCAAAA chrIII-NC_003074:2016186 175 2.52e-04 TTTAATGGGC TCTTTTTTTC ATAAACCCGT chrII-NC_003071:6920409- 18 2.78e-04 AAAACTCTTG TTTTCCTTTC AAAGATTTAG chrV-NC_003076:9628962-9 144 3.02e-04 AGCAGGTTTC TTTCTATTTC CAGATAAAAA chrV-NC_003076:16450886- 113 3.02e-04 TAGATGGATA TTTTCTTTCT AATTATGGAT chrV-NC_003076:10459004- 151 3.02e-04 ACTTCGATTA TTTCTATTTC TGTTCATATT chrIV-NC_003075:14118209 147 3.02e-04 ACGCATGCCA TTTCTATTTC CGGTTCCTGC chrI-NC_003070:24732448- 86 3.02e-04 ATGTCCTAAG TTTTCTTTCT ATTTCGATTC chrII-NC_003071:18811073 139 3.02e-04 TACACATCTT TTTCCCTCCC ATAAATATCT chrIII-NC_003074:1016321 40 3.02e-04 CAGAAACTGG TTTTCTTTCT ATTTTGGTAT chrII-NC_003071:19491297 62 3.20e-04 CCACATTCGA TTTTCTTTGT GAGACGTGTG chrIII-NC_003074:1976038 74 3.20e-04 AATTAGAAAG TCTCTGTTCT CCTCCTCCAC chrV-NC_003076:5205507-5 35 3.67e-04 AGCTCTCTTA TCTTTTTCGT GGTCAGAAAT chrIV-NC_003075:6752985- 142 3.67e-04 TGAATATTTA TTTTTATTTT TGACAGCTAT chrII-NC_003071:10628311 185 3.67e-04 AGGATTCAAA TTTCTGTTCC TTTCCT chrIII-NC_003074:8213415 18 3.67e-04 AAAATATAAA TTTTTATTTT TTAAAATATT chrV-NC_003076:4734829-4 5 3.96e-04 TTCG TTTTTTTCCC TCATGTAAAT chrIV-NC_003075:6771910- 10 3.96e-04 TAGTAAAAC TCTTTGTCTC GTAAACATTG chrIV-NC_003075:6771834- 86 3.96e-04 TTAGTAAAAC TCTTTGTCTC GTAAACATTG chrI-NC_003070:11454805- 87 3.96e-04 GGATGAGAGC TCTTTGTCTC TGCGTGTCAA chrII-NC_003071:17189231 128 3.96e-04 TAACGTCAAT TTTTTCTTGT CCCATGAAAT chrIII-NC_003074:4606158 12 3.96e-04 TAACTCTTCA TTTTCATTTT AATTAATTCG chrIII-NC_003074:8943976 30 3.96e-04 AAGAGAATAG TTTTTCTTGT CCAAATCAAT chrIII-NC_003074:2348858 126 3.96e-04 GTAACGTAGT TCTCTCTCGC GTGCATTGAA chrV-NC_003076:24886947- 65 4.20e-04 TTAGAGAAAA TTTCTATTCT AGTATTAGTC chrIV-NC_003075:7349242- 43 4.20e-04 GAAAATTATA TTTTCCTTGT CCATTTTCAA chrIV-NC_003075:13685900 154 4.20e-04 ACTACTAGGG TTTTTTTTCC GGCACGTGTA chrI-NC_003070:30249255- 133 4.20e-04 CTTGTAACCG TTTCTATCGT TGACTTTGAC chrV-NC_003076:448654-44 85 4.66e-04 CACAATTAAA TTTTTGTTGT CCATACACGT chrII-NC_003071:18786456 145 4.66e-04 CAAGTATATC TCTTTATTTT TACTACGCGA chrII-NC_003071:11689161 71 4.66e-04 ATTAAATATA TTTTTGTTGT TCATTCCCAA chrIII-NC_003074:2285939 146 4.66e-04 AATTATTGCT TTTTCTTTGC CAGTTAAAAC chrI-NC_003070:28467619- 135 4.83e-04 AAGTCAACGC TCTTTCTTGT ATTTTGTCTT chrV-NC_003076:24953160- 161 5.04e-04 ATTTCTTAAT TTTTTATTTC TATCTAATTT chrIV-NC_003075:6906145- 16 5.04e-04 TGGTCGATGC TCTTTGTCCT TACATCGGTC chrI-NC_003070:8563015-8 136 5.04e-04 TCTGCTGCGA TCTCCATCCT CCTCATCCGA chrI-NC_003070:6867963-6 155 5.04e-04 CTACTTCTTG TCTCCATCCT TTCCAACCGA chrIV-NC_003075:11425880 59 5.24e-04 CTATCGACTT TTTTCCTTCC GTTAATCAAG chrI-NC_003070:5018083-5 191 5.36e-04 GTAATCTATT TTTTTGTCCC chrIII-NC_003074:4732789 86 5.62e-04 AACCCTTCGG TTTTCGTTCC GGTTTTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:25158624- 3.1e-06 170_[+3]_20 chrV-NC_003076:900190-90 3.1e-06 155_[+3]_35 chrV-NC_003076:7673076-7 3.1e-06 4_[+3]_186 chrV-NC_003076:7265855-7 3.1e-06 53_[+3]_137 chrII-NC_003071:7934198- 3.1e-06 67_[+3]_123 chrV-NC_003076:7266265-7 9.9e-06 97_[+3]_93 chrIV-NC_003075:17334368 9.9e-06 179_[+3]_11 chrIV-NC_003075:17048860 9.9e-06 155_[+3]_35 chrIV-NC_003075:8203258- 9.9e-06 88_[+3]_102 chrI-NC_003070:26097575- 9.9e-06 72_[+3]_118 chrI-NC_003070:8596542-8 9.9e-06 177_[+3]_13 chrI-NC_003070:23238411- 9.9e-06 114_[+3]_76 chrII-NC_003071:19015799 9.9e-06 46_[+3]_144 chrII-NC_003071:8760319- 9.9e-06 129_[+3]_61 chrIII-NC_003074:2214119 9.9e-06 9_[+3]_181 chrV-NC_003076:5962181-5 1.3e-05 112_[+3]_78 chrV-NC_003076:7960250-7 1.3e-05 54_[+3]_136 chrV-NC_003076:26807915- 1.3e-05 74_[+3]_116 chrI-NC_003070:25320229- 1.3e-05 96_[+3]_94 chrI-NC_003070:21517777- 1.3e-05 125_[+3]_65 chrI-NC_003070:23734604- 1.3e-05 89_[+3]_101 chrI-NC_003070:11472862- 1.3e-05 108_[+3]_82 chrI-NC_003070:24331613- 1.3e-05 184_[+3]_6 chrII-NC_003071:13036795 1.3e-05 46_[+3]_144 chrII-NC_003071:8813586- 1.3e-05 89_[+3]_101 chrII-NC_003071:19114215 1.3e-05 138_[+3]_52 chrII-NC_003071:13036732 1.3e-05 109_[+3]_81 chrIII-NC_003074:5216309 1.3e-05 96_[+3]_94 chrIII-NC_003074:5216276 1.3e-05 129_[+3]_61 chrV-NC_003076:5177754-5 1.7e-05 35_[+3]_155 chrI-NC_003070:27294385- 1.7e-05 125_[+3]_65 chrIV-NC_003075:7369585- 2.5e-05 158_[+3]_32 chrII-NC_003071:14193902 2.5e-05 73_[+3]_117 chrII-NC_003071:17819771 2.5e-05 129_[+3]_61 chrIII-NC_003074:2098821 2.5e-05 78_[+3]_112 chrII-NC_003071:16111201 3.1e-05 78_[+3]_112 chrIII-NC_003074:1722372 3.1e-05 118_[+3]_72 chrIII-NC_003074:1876334 3.1e-05 107_[+3]_83 chrV-NC_003076:26155-263 4.4e-05 157_[+3]_33 chrIV-NC_003075:13023617 4.4e-05 121_[+3]_69 chrIV-NC_003075:13854216 4.4e-05 75_[+3]_115 chrI-NC_003070:1143756-1 4.4e-05 109_[+3]_81 chrI-NC_003070:6174672-6 4.4e-05 143_[+3]_47 chrI-NC_003070:1143820-1 4.4e-05 45_[+3]_145 chrI-NC_003070:28955713- 4.4e-05 162_[+3]_28 chrII-NC_003071:9580055- 4.4e-05 133_[+3]_57 chrIII-NC_003074:1009490 4.4e-05 43_[+3]_147 chrV-NC_003076:26805534- 5.4e-05 102_[+3]_88 chrV-NC_003076:24239588- 5.4e-05 135_[+3]_55 chrIV-NC_003075:17736542 5.4e-05 157_[+3]_33 chrIV-NC_003075:18318587 5.4e-05 157_[+3]_33 chrI-NC_003070:28315795- 5.4e-05 128_[+3]_62 chrI-NC_003070:5137983-5 5.4e-05 2_[+3]_188 chrIII-NC_003074:1630167 5.4e-05 99_[+3]_91 chrIII-NC_003074:2025163 5.4e-05 10_[+3]_180 chrIII-NC_003074:2196946 5.4e-05 6_[+3]_184 chrV-NC_003076:15997367- 6.8e-05 [+3]_190 chrV-NC_003076:756609-75 6.8e-05 75_[+3]_115 chrV-NC_003076:9515557-9 6.8e-05 145_[+3]_45 chrV-NC_003076:21437588- 6.8e-05 70_[+3]_120 chrV-NC_003076:10356668- 6.8e-05 16_[+3]_174 chrIV-NC_003075:12769653 6.8e-05 34_[+3]_156 chrI-NC_003070:22512251- 6.8e-05 [+3]_190 chrI-NC_003070:24760580- 6.8e-05 4_[+3]_186 chrII-NC_003071:18188065 6.8e-05 98_[+3]_92 chrIII-NC_003074:665060- 6.8e-05 72_[+3]_118 chrIV-NC_003075:14266719 8.2e-05 137_[+3]_53 chrI-NC_003070:6746757-6 8.2e-05 143_[+3]_47 chrI-NC_003070:22343054- 8.2e-05 171_[+3]_19 chrIII-NC_003074:5236683 8.2e-05 142_[+3]_48 chrIII-NC_003074:5236747 8.2e-05 78_[+3]_112 chrIII-NC_003074:611194- 8.2e-05 123_[+3]_67 chrI-NC_003070:4132322-4 9.3e-05 126_[+3]_64 chrII-NC_003071:17508903 9.3e-05 165_[+3]_25 chrIII-NC_003074:2115360 9.3e-05 168_[+3]_22 chrV-NC_003076:5011856-5 0.00011 176_[+3]_14 chrIV-NC_003075:9443322- 0.00011 56_[+3]_134 chrIV-NC_003075:13016235 0.00011 77_[+3]_113 chrIV-NC_003075:2661596- 0.00011 117_[+3]_73 chrIV-NC_003075:11604485 0.00011 139_[+3]_51 chrV-NC_003076:973984-97 0.00013 43_[+3]_147 chrV-NC_003076:16451031- 0.00013 186_[+3]_4 chrV-NC_003076:20781642- 0.00013 60_[+3]_130 chrV-NC_003076:24935013- 0.00013 2_[+3]_188 chrIV-NC_003075:10600009 0.00013 128_[+3]_62 chrIV-NC_003075:17535190 0.00013 15_[+3]_175 chrI-NC_003070:28292956- 0.00013 57_[+3]_133 chrI-NC_003070:3108015-3 0.00013 157_[+3]_33 chrI-NC_003070:25743975- 0.00013 167_[+3]_23 chrI-NC_003070:7930400-7 0.00013 36_[+3]_154 chrII-NC_003071:15099380 0.00013 157_[+3]_33 chrIII-NC_003074:4732955 0.00013 105_[+3]_85 chrV-NC_003076:9480398-9 0.00014 164_[+3]_26 chrV-NC_003076:8359800-8 0.00014 167_[+3]_23 chrIV-NC_003075:13475395 0.00014 27_[+3]_163 chrII-NC_003071:18749207 0.00014 106_[+3]_84 chrI-NC_003070:7930555-7 0.00017 55_[+3]_135 chrI-NC_003070:26038263- 0.00017 91_[+3]_99 chrII-NC_003071:14450955 0.00017 168_[+3]_22 chrII-NC_003071:12849576 0.00017 19_[+3]_171 chrIII-NC_003074:2144865 0.00017 21_[+3]_169 chrV-NC_003076:22649608- 0.00019 176_[+3]_14 chrIV-NC_003075:14331411 0.00019 127_[+3]_63 chrIV-NC_003075:17798664 0.00019 154_[+3]_36 chrI-NC_003070:17253659- 0.00019 72_[+3]_118 chrIII-NC_003074:822690- 0.00019 84_[+3]_106 chrV-NC_003076:7833316-7 0.00021 67_[+3]_123 chrII-NC_003071:17975979 0.00021 161_[+3]_29 chrII-NC_003071:7935107- 0.00021 135_[+3]_55 chrIV-NC_003075:16256073 0.00023 24_[+3]_166 chrIV-NC_003075:16613081 0.00023 178_[+3]_12 chrII-NC_003071:8544091- 0.00023 3_[+3]_187 chrV-NC_003076:25972709- 0.00025 180_[+3]_10 chrIV-NC_003075:13023435 0.00025 51_[+3]_139 chrIV-NC_003075:33765-33 0.00025 116_[+3]_74 chrI-NC_003070:25877584- 0.00025 11_[+3]_179 chrIII-NC_003074:2016186 0.00025 174_[+3]_16 chrII-NC_003071:6920409- 0.00028 17_[+3]_173 chrV-NC_003076:9628962-9 0.0003 143_[+3]_47 chrV-NC_003076:16450886- 0.0003 112_[+3]_78 chrV-NC_003076:10459004- 0.0003 150_[+3]_40 chrIV-NC_003075:14118209 0.0003 146_[+3]_44 chrI-NC_003070:24732448- 0.0003 85_[+3]_105 chrII-NC_003071:18811073 0.0003 138_[+3]_52 chrIII-NC_003074:1016321 0.0003 39_[+3]_151 chrII-NC_003071:19491297 0.00032 61_[+3]_129 chrIII-NC_003074:1976038 0.00032 73_[+3]_117 chrV-NC_003076:5205507-5 0.00037 34_[+3]_156 chrIV-NC_003075:6752985- 0.00037 141_[+3]_49 chrII-NC_003071:10628311 0.00037 184_[+3]_6 chrIII-NC_003074:8213415 0.00037 17_[+3]_173 chrV-NC_003076:4734829-4 0.0004 4_[+3]_186 chrIV-NC_003075:6771910- 0.0004 9_[+3]_181 chrIV-NC_003075:6771834- 0.0004 85_[+3]_105 chrI-NC_003070:11454805- 0.0004 86_[+3]_104 chrII-NC_003071:17189231 0.0004 127_[+3]_63 chrIII-NC_003074:4606158 0.0004 11_[+3]_179 chrIII-NC_003074:8943976 0.0004 29_[+3]_161 chrIII-NC_003074:2348858 0.0004 125_[+3]_65 chrV-NC_003076:24886947- 0.00042 64_[+3]_126 chrIV-NC_003075:7349242- 0.00042 42_[+3]_148 chrIV-NC_003075:13685900 0.00042 153_[+3]_37 chrI-NC_003070:30249255- 0.00042 132_[+3]_58 chrV-NC_003076:448654-44 0.00047 84_[+3]_106 chrII-NC_003071:18786456 0.00047 144_[+3]_46 chrII-NC_003071:11689161 0.00047 70_[+3]_120 chrIII-NC_003074:2285939 0.00047 145_[+3]_45 chrI-NC_003070:28467619- 0.00048 134_[+3]_56 chrV-NC_003076:24953160- 0.0005 160_[+3]_30 chrIV-NC_003075:6906145- 0.0005 15_[+3]_175 chrI-NC_003070:8563015-8 0.0005 135_[+3]_55 chrI-NC_003070:6867963-6 0.0005 154_[+3]_36 chrIV-NC_003075:11425880 0.00052 58_[+3]_132 chrI-NC_003070:5018083-5 0.00054 190_[+3] chrIII-NC_003074:4732789 0.00056 85_[+3]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=10 seqs=155 chrV-NC_003076:25158624- ( 171) TTTCTTTCTT 1 chrV-NC_003076:900190-90 ( 156) TTTCTTTCTT 1 chrV-NC_003076:7673076-7 ( 5) TTTCTTTCTT 1 chrV-NC_003076:7265855-7 ( 54) TTTCTTTCTT 1 chrII-NC_003071:7934198- ( 68) TTTCTTTCTT 1 chrV-NC_003076:7266265-7 ( 98) TTTCTTTTTT 1 chrIV-NC_003075:17334368 ( 180) TTTCCTTCTT 1 chrIV-NC_003075:17048860 ( 156) TTTCTTTTTT 1 chrIV-NC_003075:8203258- ( 89) TTTCTTTTTT 1 chrI-NC_003070:26097575- ( 73) TTTCCTTCTT 1 chrI-NC_003070:8596542-8 ( 178) TTTCTTTTTT 1 chrI-NC_003070:23238411- ( 115) TTTCTTTTTT 1 chrII-NC_003071:19015799 ( 47) TTTCTTTTTT 1 chrII-NC_003071:8760319- ( 130) TTTCTTTTTT 1 chrIII-NC_003074:2214119 ( 10) TTTCTTTTTT 1 chrV-NC_003076:5962181-5 ( 113) TTTCCTTTTT 1 chrV-NC_003076:7960250-7 ( 55) TTTCCTTTTT 1 chrV-NC_003076:26807915- ( 75) TTTCCTTTTT 1 chrI-NC_003070:25320229- ( 97) TTTCCTTTTT 1 chrI-NC_003070:21517777- ( 126) TTTCCTTTTT 1 chrI-NC_003070:23734604- ( 90) TTTCCTTTTT 1 chrI-NC_003070:11472862- ( 109) TTTCCTTTTT 1 chrI-NC_003070:24331613- ( 185) TTTCCTTTTT 1 chrII-NC_003071:13036795 ( 47) TTTCCTTTTT 1 chrII-NC_003071:8813586- ( 90) TTTCCTTTTT 1 chrII-NC_003071:19114215 ( 139) TTTCCTTTTT 1 chrII-NC_003071:13036732 ( 110) TTTCCTTTTT 1 chrIII-NC_003074:5216309 ( 97) TTTCCTTTTT 1 chrIII-NC_003074:5216276 ( 130) TTTCCTTTTT 1 chrV-NC_003076:5177754-5 ( 36) TCTCTTTCTT 1 chrI-NC_003070:27294385- ( 126) TTTCTCTCTT 1 chrIV-NC_003075:7369585- ( 159) TCTCTTTTTT 1 chrII-NC_003071:14193902 ( 74) TTTCTCTTTT 1 chrII-NC_003071:17819771 ( 130) TCTCTTTTTT 1 chrIII-NC_003074:2098821 ( 79) TCTCCTTCTT 1 chrII-NC_003071:16111201 ( 79) TTTCCCTTTT 1 chrIII-NC_003074:1722372 ( 119) TTTCCCTTTT 1 chrIII-NC_003074:1876334 ( 108) TCTCCTTTTT 1 chrV-NC_003076:26155-263 ( 158) TCTCTCTCTT 1 chrIV-NC_003075:13023617 ( 122) TTTCTGTTTT 1 chrIV-NC_003075:13854216 ( 76) TTTCCTTTTC 1 chrI-NC_003070:1143756-1 ( 110) TTTCCGTCTT 1 chrI-NC_003070:6174672-6 ( 144) TCTCTCTCTT 1 chrI-NC_003070:1143820-1 ( 46) TTTCCGTCTT 1 chrI-NC_003070:28955713- ( 163) TTTCCTTTTC 1 chrII-NC_003071:9580055- ( 134) TCTCTCTCTT 1 chrIII-NC_003074:1009490 ( 44) TTTCCTTTTC 1 chrV-NC_003076:26805534- ( 103) TCTCCCTCTT 1 chrV-NC_003076:24239588- ( 136) TTTTTTTCTT 1 chrIV-NC_003075:17736542 ( 158) TTTTTTTCTT 1 chrIV-NC_003075:18318587 ( 158) TTTTTTTCTT 1 chrI-NC_003070:28315795- ( 129) TTTTTTTCTT 1 chrI-NC_003070:5137983-5 ( 3) TTTTTTTCTT 1 chrIII-NC_003074:1630167 ( 100) TTTCCGTTTT 1 chrIII-NC_003074:2025163 ( 11) TTTTTTTCTT 1 chrIII-NC_003074:2196946 ( 7) TTTTTTTCTT 1 chrV-NC_003076:15997367- ( 1) TTTTTTTTTT 1 chrV-NC_003076:756609-75 ( 76) TTTTTTTTTT 1 chrV-NC_003076:9515557-9 ( 146) TTTCTCTCTC 1 chrV-NC_003076:21437588- ( 71) TTTCTCTCTC 1 chrV-NC_003076:10356668- ( 17) TTTTTTTTTT 1 chrIV-NC_003075:12769653 ( 35) TTTTCTTCTT 1 chrI-NC_003070:22512251- ( 1) TTTTTTTTTT 1 chrI-NC_003070:24760580- ( 5) TTTTTTTTTT 1 chrII-NC_003071:18188065 ( 99) TCTCTTTCTC 1 chrIII-NC_003074:665060- ( 73) TTTTTTTTTT 1 chrIV-NC_003075:14266719 ( 138) TTTTCTTTTT 1 chrI-NC_003070:6746757-6 ( 144) TCTCTTTTTC 1 chrI-NC_003070:22343054- ( 172) TCTCCTTCTC 1 chrIII-NC_003074:5236683 ( 143) TTTCTTTCCT 1 chrIII-NC_003074:5236747 ( 79) TTTCTTTCCT 1 chrIII-NC_003074:611194- ( 124) TCTCTGTCTT 1 chrI-NC_003070:4132322-4 ( 127) TTTCTTTCGT 1 chrII-NC_003071:17508903 ( 166) TTTCTTTTCT 1 chrIII-NC_003074:2115360 ( 169) TCTCTGTTTT 1 chrV-NC_003076:5011856-5 ( 177) TTTCCTTTCT 1 chrIV-NC_003075:9443322- ( 57) TTTCTTTTGT 1 chrIV-NC_003075:13016235 ( 78) TTTCTGTCTC 1 chrIV-NC_003075:2661596- ( 118) TTTTTCTCTT 1 chrIV-NC_003075:11604485 ( 140) TTTTTCTCTT 1 chrV-NC_003076:973984-97 ( 44) TCTCTCTCTC 1 chrV-NC_003076:16451031- ( 187) TCTTCTTCTT 1 chrV-NC_003076:20781642- ( 61) TCTTCTTCTT 1 chrV-NC_003076:24935013- ( 3) TTTTTCTTTT 1 chrIV-NC_003075:10600009 ( 129) TTTCCTTTGT 1 chrIV-NC_003075:17535190 ( 16) TCTTTTTTTT 1 chrI-NC_003070:28292956- ( 58) TTTCTGTTTC 1 chrI-NC_003070:3108015-3 ( 158) TCTCTCTCTC 1 chrI-NC_003070:25743975- ( 168) TCTTCTTCTT 1 chrI-NC_003070:7930400-7 ( 37) TCTTCTTCTT 1 chrII-NC_003071:15099380 ( 158) TCTCTCTCTC 1 chrIII-NC_003074:4732955 ( 106) TCTTCTTCTT 1 chrV-NC_003076:9480398-9 ( 165) TCTCCCTCTC 1 chrV-NC_003076:8359800-8 ( 168) TCTTCTTTTT 1 chrIV-NC_003075:13475395 ( 28) TCTCTCTTTC 1 chrII-NC_003071:18749207 ( 107) TCTTCTTTTT 1 chrI-NC_003070:7930555-7 ( 56) TTTCTATTTT 1 chrI-NC_003070:26038263- ( 92) TTTCTATTTT 1 chrII-NC_003071:14450955 ( 169) TTTTCTTCTC 1 chrII-NC_003071:12849576 ( 20) TTTCTATTTT 1 chrIII-NC_003074:2144865 ( 22) TTTTCTTCTC 1 chrV-NC_003076:22649608- ( 177) TTTTTGTTTT 1 chrIV-NC_003075:14331411 ( 128) TTTTTGTTTT 1 chrIV-NC_003075:17798664 ( 155) TTTCTCTTGT 1 chrI-NC_003070:17253659- ( 73) TTTCTCTTGT 1 chrIII-NC_003074:822690- ( 85) TTTCCATTTT 1 chrV-NC_003076:7833316-7 ( 68) TCTTCCTCTT 1 chrII-NC_003071:17975979 ( 162) TTTCTTTCGC 1 chrII-NC_003071:7935107- ( 136) TCTTCCTCTT 1 chrIV-NC_003075:16256073 ( 25) TTTCTGTTCT 1 chrIV-NC_003075:16613081 ( 179) TTTCTTTTGC 1 chrII-NC_003071:8544091- ( 4) TTTCTGTTCT 1 chrV-NC_003076:25972709- ( 181) TTTTTTTCCT 1 chrIV-NC_003075:13023435 ( 52) TCTCTCTCGT 1 chrIV-NC_003075:33765-33 ( 117) TTTCTGTTGT 1 chrI-NC_003070:25877584- ( 12) TCTTTGTCTT 1 chrIII-NC_003074:2016186 ( 175) TCTTTTTTTC 1 chrII-NC_003071:6920409- ( 18) TTTTCCTTTC 1 chrV-NC_003076:9628962-9 ( 144) TTTCTATTTC 1 chrV-NC_003076:16450886- ( 113) TTTTCTTTCT 1 chrV-NC_003076:10459004- ( 151) TTTCTATTTC 1 chrIV-NC_003075:14118209 ( 147) TTTCTATTTC 1 chrI-NC_003070:24732448- ( 86) TTTTCTTTCT 1 chrII-NC_003071:18811073 ( 139) TTTCCCTCCC 1 chrIII-NC_003074:1016321 ( 40) TTTTCTTTCT 1 chrII-NC_003071:19491297 ( 62) TTTTCTTTGT 1 chrIII-NC_003074:1976038 ( 74) TCTCTGTTCT 1 chrV-NC_003076:5205507-5 ( 35) TCTTTTTCGT 1 chrIV-NC_003075:6752985- ( 142) TTTTTATTTT 1 chrII-NC_003071:10628311 ( 185) TTTCTGTTCC 1 chrIII-NC_003074:8213415 ( 18) TTTTTATTTT 1 chrV-NC_003076:4734829-4 ( 5) TTTTTTTCCC 1 chrIV-NC_003075:6771910- ( 10) TCTTTGTCTC 1 chrIV-NC_003075:6771834- ( 86) TCTTTGTCTC 1 chrI-NC_003070:11454805- ( 87) TCTTTGTCTC 1 chrII-NC_003071:17189231 ( 128) TTTTTCTTGT 1 chrIII-NC_003074:4606158 ( 12) TTTTCATTTT 1 chrIII-NC_003074:8943976 ( 30) TTTTTCTTGT 1 chrIII-NC_003074:2348858 ( 126) TCTCTCTCGC 1 chrV-NC_003076:24886947- ( 65) TTTCTATTCT 1 chrIV-NC_003075:7349242- ( 43) TTTTCCTTGT 1 chrIV-NC_003075:13685900 ( 154) TTTTTTTTCC 1 chrI-NC_003070:30249255- ( 133) TTTCTATCGT 1 chrV-NC_003076:448654-44 ( 85) TTTTTGTTGT 1 chrII-NC_003071:18786456 ( 145) TCTTTATTTT 1 chrII-NC_003071:11689161 ( 71) TTTTTGTTGT 1 chrIII-NC_003074:2285939 ( 146) TTTTCTTTGC 1 chrI-NC_003070:28467619- ( 135) TCTTTCTTGT 1 chrV-NC_003076:24953160- ( 161) TTTTTATTTC 1 chrIV-NC_003075:6906145- ( 16) TCTTTGTCCT 1 chrI-NC_003070:8563015-8 ( 136) TCTCCATCCT 1 chrI-NC_003070:6867963-6 ( 155) TCTCCATCCT 1 chrIV-NC_003075:11425880 ( 59) TTTTCCTTCC 1 chrI-NC_003070:5018083-5 ( 191) TTTTTGTCCC 1 chrIII-NC_003074:4732789 ( 86) TTTTCGTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 10.5073 E= 4.2e-044 -1392 -1392 -1392 170 -1392 53 -1392 123 -1392 -1392 -1392 170 -1392 164 -1392 37 -1392 96 -1392 102 -157 6 -31 81 -1392 -1392 -1392 170 -1392 111 -1392 93 -1392 -44 -58 124 -1392 31 -1392 130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 155 E= 4.2e-044 0.000000 0.000000 0.000000 1.000000 0.000000 0.277419 0.000000 0.722581 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.374194 0.000000 0.625806 0.103226 0.200000 0.154839 0.541935 0.000000 0.000000 0.000000 1.000000 0.000000 0.412903 0.000000 0.587097 0.000000 0.141935 0.129032 0.729032 0.000000 0.238710 0.000000 0.761290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- T[TC]T[CT][TC][TC]T[TC]T[TC] -------------------------------------------------------------------------------- Time 193.94 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 8 sites = 124 llr = 969 E-value = 2.2e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A :::3::53 pos.-specific C ::::aa33 probability G 2aa3:::1 matrix T 8::4::23 bits 2.4 ** ** 2.1 ** ** 1.9 ** ** 1.7 ** ** Relative 1.4 ** ** Entropy 1.2 ** ** (11.3 bits) 1.0 *** ** 0.7 *** ** 0.5 *** *** 0.2 ******* 0.0 -------- Multilevel TGGTCCAA consensus G G CT sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV-NC_003076:23773879- 171 4.75e-06 ACGGTGGATA TGGGCCAC GAATCTGGTT chrI-NC_003070:6560769-6 181 4.75e-06 TTGATTGAGA TGGGCCAC ATGAGAATCA chrI-NC_003070:18321436- 49 4.75e-06 GGATCAAAGA TGGGCCAC GATTCGTCAA chrIII-NC_003074:1175197 164 4.75e-06 AAACACAACT TGGGCCAC CACTACTACT chrV-NC_003076:16451031- 124 2.30e-05 CACTAGCAAA TGGGCCAA GGTTAGTAGG chrV-NC_003076:18215713- 146 2.30e-05 TTTTTCCATG TGGTCCAC TTATTTATCC chrI-NC_003070:1953781-1 40 2.30e-05 GCCCCAAAAG TGGTCCAC ACATCGCATC chrI-NC_003070:9763126-9 99 2.30e-05 AACTTCGTTA TGGTCCAC TTACGGCCGG chrI-NC_003070:1773727-1 145 2.30e-05 CGAATGAATA TGGGCCAA CAAAAAGCCA chrV-NC_003076:24476843- 87 4.02e-05 ATGGGCCTAG TGGGCCCA ATGATCACGT chrV-NC_003076:9515557-9 133 4.02e-05 ACGTCCAGTC TGGTCCCC ACATTTTTCT chrIV-NC_003075:14331411 56 4.02e-05 GCCCAACATG TGGGCCCA ACGGTGTCTC chrIV-NC_003075:8203258- 46 4.02e-05 TTTTTAACAT TGGTCCCC AATATGTTTT chrIV-NC_003075:14266719 129 4.02e-05 TAGAAATACA TGGGCCCA ATTTTCTTTT chrI-NC_003070:4132322-4 74 4.02e-05 GTGAGTAATT TGGGCCCA CTCCAATATA chrI-NC_003070:22512251- 106 4.02e-05 TATTATTTAG TGGTCCCC ATTCAATTAT chrI-NC_003070:18942515- 172 4.02e-05 AACAAAGACA TGGTCCCC AACAATAATC chrII-NC_003071:19100983 161 4.02e-05 ATTTATCATA TGGTCCCC TCGTTTTATA chrIII-NC_003074:2025163 113 4.02e-05 GTGGCAAATA TGGGCCCA CAGCTATAGA chrIII-NC_003074:1395996 14 4.02e-05 CAAAGAAAGC TGGGCCAT GTCTGCATTT chrIII-NC_003074:1927636 50 4.02e-05 AAAGAGAAAA TGGGCCCA ATCTTAAGAC chrV-NC_003076:973984-97 169 5.72e-05 AATTTGGAAC TGGGCCCT CACAAATCAC chrV-NC_003076:266618-26 39 5.72e-05 GGACCAGTAA TGGGCCCT ACTGAGTCAC chrV-NC_003076:24239588- 121 5.72e-05 TAAAGAGTGT TGGTCCAA GATGATTTTT chrV-NC_003076:24886947- 1 5.72e-05 . TGGTCCAA TAATGTTTCT chrIV-NC_003075:7369585- 119 5.72e-05 GGGCCTTAGA TGGGCCCT TCTTGCTAAA chrIV-NC_003075:13685900 88 5.72e-05 TTACGGATAG TGGTCCAA CTGACACGTG chrI-NC_003070:25736387- 32 5.72e-05 GTCTATATAA TGGTCCAA TTTCAAGATC chrI-NC_003070:1880787-1 2 5.72e-05 G TGGTCCAA TGATTTTGTA chrII-NC_003071:17975979 152 5.72e-05 TTTGGCTTTT TGGTCCAA TGTTTCTTTC chrIII-NC_003074:1245385 167 5.72e-05 CCATTTTTAT TGGTCCAA CCCAACTACG chrIII-NC_003074:4606158 126 5.72e-05 AAATATCCCT TGGTCCAA AGGTCTTTCC chrV-NC_003076:2561208-2 108 8.47e-05 ATAAAATGTA TGGACCAC ATTGTTTCCT chrIV-NC_003075:17409244 173 8.47e-05 GAAAATCTCG TGGTCCAT CTAAAAATGT chrIV-NC_003075:10600009 86 8.47e-05 GGGAATCAAA TGGTCCAT ACCCACGTGC chrIV-NC_003075:8100451- 13 8.47e-05 ATAACAAATC TGGTCCAT GTGTCCACGT chrI-NC_003070:26164485- 15 8.47e-05 ACGTGTGGAT TGGTCCAT CACAACTCAC chrI-NC_003070:28292956- 175 8.47e-05 TAGATGGCGG TGGTCCAT TTAAAATACT chrI-NC_003070:26043093- 128 8.47e-05 GTCTCTTTAT TGGTCCAT GATTAGATTC chrI-NC_003070:26164321- 179 8.47e-05 ACGTGTGGAT TGGTCCAT CACAACTCAC chrI-NC_003070:72146-723 49 8.47e-05 ACTTTCTCGA TGGTCCAT GGGCCTTAGA chrII-NC_003071:16505491 32 8.47e-05 GCACAAGCCC TGGACCAC CAACATTCTC chrII-NC_003071:12946397 193 8.47e-05 TTTCAGTATT TGGACCAC chrII-NC_003071:11941166 144 8.47e-05 TCAATGCTAA TGGACCAC ACACATATAT chrII-NC_003071:17508903 59 8.47e-05 GAAGTGAAAG TGGTCCAT GATTACAAGT chrIII-NC_003074:822690- 19 8.47e-05 TATATAGGTA TGGTCCCA ATCGCAGCTA chrIII-NC_003074:9717966 141 8.47e-05 TGTCTTTTAT TGGTCCAT ACTATTTTGG chrIII-NC_003074:8943216 159 8.47e-05 AAATCTAAAT TGGACCAC CTGATGTCTC chrV-NC_003076:3857021-3 133 1.00e-04 GATAGGAGTG TGGTCCCT TGTTTGTATC chrIV-NC_003075:17334368 128 1.00e-04 GCACGAGCTG TGGTCCCT TCCCCGTTGT chrIV-NC_003075:18472024 26 1.00e-04 CACTGGTTGA TGGTCCCT ATTTGTCCAA chrIV-NC_003075:14141422 59 1.14e-04 GAAAGATGGA TGGACCAA AGGACGTGTG chrII-NC_003071:12185823 53 1.14e-04 TGTGGTCACA TGGACCAA AACGCGTAAT chrV-NC_003076:7833316-7 58 1.43e-04 GAAATAGCCT TGGACCCA ACTCTTCCTC chrV-NC_003076:24239953- 112 1.43e-04 CGGTACGTTA GGGTCCAC AAGGAAGAAC chrV-NC_003076:7266265-7 193 1.43e-04 AAGTACAGTG GGGTCCAC chrIV-NC_003075:17319773 149 1.43e-04 GACGAAACGA TGGACCAT GTGAGGTTCA chrIV-NC_003075:14863096 2 1.43e-04 A GGGGCCAA TCTTTCCTGA chrI-NC_003070:8598740-8 92 1.43e-04 TAGACGGACA GGGTCCAC GTCAAGACGT chrI-NC_003070:4082490-4 116 1.43e-04 ATGTACTTTA GGGTCCAC ATTCACGAGG chrI-NC_003070:24760580- 130 1.43e-04 TGGAAAGTAT TGGACCCA AACTGGAGAC chrI-NC_003070:23126552- 58 1.43e-04 GGCTGGTATG TGGACCCA CTTTCAAATG chrII-NC_003071:14193902 66 1.43e-04 TGACAGCTAC GGGTCCAC TTTCTCTTTT chrII-NC_003071:10628311 71 1.43e-04 AAATCGAGTA TGGACCCA AAGCTCTCTA chrIII-NC_003074:2012113 72 1.43e-04 AAGAAGTAAA GGGTCCAC TTGAGTTACT chrIII-NC_003074:9373252 10 1.43e-04 AATAAAATT TGGACCCA GAGGTGAGAA chrIII-NC_003074:7503344 191 1.43e-04 AGCTCCGGTC TGGACCAT TT chrIV-NC_003075:17798664 107 1.77e-04 ATCAAATTGT GGGTCCAA TTGAATATAA chrII-NC_003071:641561-6 159 1.77e-04 ACGGTGCTGG TGGGCCTC TTGTCTTGTT chrIII-NC_003074:2011442 16 1.77e-04 ACGCTCAAAC TGGGCCTC ATCTTTGTAG chrV-NC_003076:10356668- 105 1.99e-04 ATTTGGAAGT GGGTCCCA TAAAAAATAT chrIV-NC_003075:17048860 109 1.99e-04 CGTGCTCTAG TGGGCCAG AATATCATAA chrI-NC_003070:7270500-7 169 1.99e-04 GACGGTTCCT GGGTCCCA CATGCCATGA chrI-NC_003070:21043046- 172 1.99e-04 CGACCATATC GGGTCCCA CACTTCCAAT chrI-NC_003070:25877584- 123 1.99e-04 GATGAGGTTT GGGTCCAT ACTTAACAGT chrII-NC_003071:12941156 147 1.99e-04 AAGCAAGGCA GGGTCCCA CGAGTGGTGA chrII-NC_003071:19227465 165 1.99e-04 CCATGCACGC GGGACCAC GTACGCGTGA chrIII-NC_003074:3885203 19 1.99e-04 GCAAGAGTCT GGGACCAC GAGAGACTCT chrIII-NC_003074:2047827 28 1.99e-04 AACTTTATCC GGGTCCAT TCATAGAGTG chrI-NC_003070:1953904-1 156 2.25e-04 CAAATCCAAT TGGTCCTC AAGTACGTTG chrI-NC_003070:5018083-5 85 2.25e-04 ATTTCCAAAT GGGTCCCT CCGGCATGCC chrII-NC_003071:18423231 170 2.25e-04 GCAGCTGTCG TGGGCCCG GGAGACAAGG chrII-NC_003071:17819771 166 2.25e-04 AAAAATTGGA TGGTCCTC CTTCAATGCT chrII-NC_003071:12849576 109 2.25e-04 CGTTTTTAAA TGGGCCTA TATATTAAAT chrIII-NC_003074:1722372 34 2.25e-04 CCAATAATTA TGGGCCTA GTCCATTTAC chrV-NC_003076:20014837- 56 2.48e-04 TAAAAGACGA TGGGCCTT AACAAGAAAA chrV-NC_003076:23840693- 85 2.48e-04 GAGACAAATG GGGACCAA CTAGTTGAGG chrV-NC_003076:23762535- 141 2.48e-04 AAATTACAAA TGGGCCTT ATCCAAACTA chrIV-NC_003075:1494888- 130 2.48e-04 TTTAAGCGGT GGGACCAA AACCTGCAAA chrIV-NC_003075:33765-33 187 2.48e-04 ACACCAACGG TGGGCCTT TTTTTC chrI-NC_003070:16713723- 170 2.48e-04 TAGAATTCTC TGGTCCAG CCCTTGATCC chrI-NC_003070:28804880- 16 2.48e-04 TTTAATTAAA TGGGCCTT TTATCTGCCC chrI-NC_003070:29121010- 109 2.48e-04 AAAATTAGTA GGGACCAA AACTAAACAA chrI-NC_003070:28953600- 66 2.48e-04 ATCATAGAAA TGGGCCTT TATGTCACCA chrII-NC_003071:14851801 145 2.48e-04 TAATTTCCAT TGGGCCTT GTGCTTTGTG chrIII-NC_003074:5216309 54 2.48e-04 CAAGCTTACA TGGGCCTT AATGACACGC chrIII-NC_003074:1983705 120 2.48e-04 GTACTTTTAT TGGGCCTT ATATCAACTC chrIII-NC_003074:2196946 54 2.48e-04 GAAAAAATGA GGGACCAA CGGTCATATT chrIII-NC_003074:2016186 159 2.48e-04 GCCGTTTCAA TGGGCCTT TAATGGGCTC chrIII-NC_003074:5216276 87 2.48e-04 CAAGCTTACA TGGGCCTT AATGACACGC chrV-NC_003076:25900220- 159 2.77e-04 AATTGAAAGA GGGACCAT GAGAGCACAT chrIV-NC_003075:9443322- 146 2.77e-04 GTCATCCTGT TGGTCCCG CTTTATTAAC chrIV-NC_003075:13017928 144 2.77e-04 GCTCTCTTGT GGGACCCA TATTTCTGTT chrI-NC_003070:26097575- 104 2.77e-04 GACCCAGACT GGGACCCA AACCCAGACC chrI-NC_003070:22877423- 65 2.77e-04 TTACTTTACG GGGACCAT GCACTATACT chrI-NC_003070:364212-36 21 2.77e-04 CTAAAAATAG GGGACCCA CGCCATTACC chrIII-NC_003074:4340381 105 2.77e-04 AATCATACGT GGGACCCA CATGACATAA chrV-NC_003076:24240069- 33 3.02e-04 CGATGAGTAT GGGACCCT GGTGGTGACA chrIV-NC_003075:272143-2 131 3.02e-04 GGGCTAATTT TGGTCCTT TTGGAAAGAT chrI-NC_003070:6899616-6 188 3.02e-04 GGAAAAGCTG TGGACCTC TCTGC chrIII-NC_003074:1138696 19 3.02e-04 GATCAGATGG TGGACCTC ACAGAGATTT chrV-NC_003076:588900-58 158 3.17e-04 ATTTTCACTT TGGACCAG TGTTATTTTC chrI-NC_003070:24732448- 56 3.17e-04 GAGTTACTTG TGGACCAG TGTGAGCCAA chrI-NC_003070:5137983-5 123 3.17e-04 TGTCTATTAG TGGCCCAC TCTAAAATCT chrII-NC_003071:17796012 149 3.17e-04 TGGATATGAT TGGCCCAC CACTCAAAAA chrIV-NC_003075:13023617 17 3.40e-04 AGTGACGTAT GGGGCCAG TGAAGGCTGG chrI-NC_003070:6311195-6 142 3.40e-04 CAAACGGGTT TGGACCCG AAATAGATCC chrII-NC_003071:12173602 56 3.40e-04 TTTGTTACGG TGGACCTA ATGATTTTAT chrIV-NC_003075:6752985- 87 3.94e-04 TTCTAAGAAG TGGCCCAT TTCATCACGT chrIV-NC_003075:12379981 165 3.94e-04 AAGATGGTCA TGGCCCAT AGATGTATGC chrII-NC_003071:13036732 12 3.94e-04 CAGATTTAGT TGGCCCAT TAATGTACAG chrV-NC_003076:23391751- 181 4.26e-04 TAAACAAATA TGGGCCTG TATGGGCCGA chrIV-NC_003075:17397611 44 4.26e-04 ATAGTTTTTG TGGGCCTG TTTTTTTGGA chrIV-NC_003075:15231300 17 4.54e-04 AATTAGAGAA GGGCCCCC AAATGTTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:23773879- 4.8e-06 170_[+4]_22 chrI-NC_003070:6560769-6 4.8e-06 180_[+4]_12 chrI-NC_003070:18321436- 4.8e-06 48_[+4]_144 chrIII-NC_003074:1175197 4.8e-06 163_[+4]_29 chrV-NC_003076:16451031- 2.3e-05 123_[+4]_69 chrV-NC_003076:18215713- 2.3e-05 145_[+4]_47 chrI-NC_003070:1953781-1 2.3e-05 39_[+4]_153 chrI-NC_003070:9763126-9 2.3e-05 98_[+4]_94 chrI-NC_003070:1773727-1 2.3e-05 144_[+4]_48 chrV-NC_003076:24476843- 4e-05 86_[+4]_106 chrV-NC_003076:9515557-9 4e-05 132_[+4]_60 chrIV-NC_003075:14331411 4e-05 55_[+4]_137 chrIV-NC_003075:8203258- 4e-05 45_[+4]_147 chrIV-NC_003075:14266719 4e-05 128_[+4]_64 chrI-NC_003070:4132322-4 4e-05 73_[+4]_119 chrI-NC_003070:22512251- 4e-05 105_[+4]_87 chrI-NC_003070:18942515- 4e-05 171_[+4]_21 chrII-NC_003071:19100983 4e-05 160_[+4]_32 chrIII-NC_003074:2025163 4e-05 112_[+4]_80 chrIII-NC_003074:1395996 4e-05 13_[+4]_179 chrIII-NC_003074:1927636 4e-05 49_[+4]_143 chrV-NC_003076:973984-97 5.7e-05 168_[+4]_24 chrV-NC_003076:266618-26 5.7e-05 38_[+4]_154 chrV-NC_003076:24239588- 5.7e-05 120_[+4]_72 chrV-NC_003076:24886947- 5.7e-05 [+4]_192 chrIV-NC_003075:7369585- 5.7e-05 118_[+4]_74 chrIV-NC_003075:13685900 5.7e-05 87_[+4]_105 chrI-NC_003070:25736387- 5.7e-05 31_[+4]_161 chrI-NC_003070:1880787-1 5.7e-05 1_[+4]_191 chrII-NC_003071:17975979 5.7e-05 151_[+4]_41 chrIII-NC_003074:1245385 5.7e-05 166_[+4]_26 chrIII-NC_003074:4606158 5.7e-05 125_[+4]_67 chrV-NC_003076:2561208-2 8.5e-05 107_[+4]_85 chrIV-NC_003075:17409244 8.5e-05 172_[+4]_20 chrIV-NC_003075:10600009 8.5e-05 85_[+4]_107 chrIV-NC_003075:8100451- 8.5e-05 12_[+4]_180 chrI-NC_003070:26164485- 8.5e-05 14_[+4]_178 chrI-NC_003070:28292956- 8.5e-05 174_[+4]_18 chrI-NC_003070:26043093- 8.5e-05 127_[+4]_65 chrI-NC_003070:26164321- 8.5e-05 178_[+4]_14 chrI-NC_003070:72146-723 8.5e-05 48_[+4]_144 chrII-NC_003071:16505491 8.5e-05 31_[+4]_161 chrII-NC_003071:12946397 8.5e-05 192_[+4] chrII-NC_003071:11941166 8.5e-05 143_[+4]_49 chrII-NC_003071:17508903 8.5e-05 58_[+4]_134 chrIII-NC_003074:822690- 8.5e-05 18_[+4]_174 chrIII-NC_003074:9717966 8.5e-05 140_[+4]_52 chrIII-NC_003074:8943216 8.5e-05 158_[+4]_34 chrV-NC_003076:3857021-3 0.0001 132_[+4]_60 chrIV-NC_003075:17334368 0.0001 127_[+4]_65 chrIV-NC_003075:18472024 0.0001 25_[+4]_167 chrIV-NC_003075:14141422 0.00011 58_[+4]_134 chrII-NC_003071:12185823 0.00011 52_[+4]_140 chrV-NC_003076:7833316-7 0.00014 57_[+4]_135 chrV-NC_003076:24239953- 0.00014 111_[+4]_81 chrV-NC_003076:7266265-7 0.00014 192_[+4] chrIV-NC_003075:17319773 0.00014 148_[+4]_44 chrIV-NC_003075:14863096 0.00014 1_[+4]_191 chrI-NC_003070:8598740-8 0.00014 91_[+4]_101 chrI-NC_003070:4082490-4 0.00014 115_[+4]_77 chrI-NC_003070:24760580- 0.00014 129_[+4]_63 chrI-NC_003070:23126552- 0.00014 57_[+4]_135 chrII-NC_003071:14193902 0.00014 65_[+4]_127 chrII-NC_003071:10628311 0.00014 70_[+4]_122 chrIII-NC_003074:2012113 0.00014 71_[+4]_121 chrIII-NC_003074:9373252 0.00014 9_[+4]_183 chrIII-NC_003074:7503344 0.00014 190_[+4]_2 chrIV-NC_003075:17798664 0.00018 106_[+4]_86 chrII-NC_003071:641561-6 0.00018 158_[+4]_34 chrIII-NC_003074:2011442 0.00018 15_[+4]_177 chrV-NC_003076:10356668- 0.0002 104_[+4]_88 chrIV-NC_003075:17048860 0.0002 108_[+4]_84 chrI-NC_003070:7270500-7 0.0002 168_[+4]_24 chrI-NC_003070:21043046- 0.0002 171_[+4]_21 chrI-NC_003070:25877584- 0.0002 122_[+4]_70 chrII-NC_003071:12941156 0.0002 146_[+4]_46 chrII-NC_003071:19227465 0.0002 164_[+4]_28 chrIII-NC_003074:3885203 0.0002 18_[+4]_174 chrIII-NC_003074:2047827 0.0002 27_[+4]_165 chrI-NC_003070:1953904-1 0.00023 155_[+4]_37 chrI-NC_003070:5018083-5 0.00023 84_[+4]_108 chrII-NC_003071:18423231 0.00023 169_[+4]_23 chrII-NC_003071:17819771 0.00023 165_[+4]_27 chrII-NC_003071:12849576 0.00023 108_[+4]_84 chrIII-NC_003074:1722372 0.00023 33_[+4]_159 chrV-NC_003076:20014837- 0.00025 55_[+4]_137 chrV-NC_003076:23840693- 0.00025 84_[+4]_108 chrV-NC_003076:23762535- 0.00025 140_[+4]_52 chrIV-NC_003075:1494888- 0.00025 129_[+4]_63 chrIV-NC_003075:33765-33 0.00025 186_[+4]_6 chrI-NC_003070:16713723- 0.00025 169_[+4]_23 chrI-NC_003070:28804880- 0.00025 15_[+4]_177 chrI-NC_003070:29121010- 0.00025 108_[+4]_84 chrI-NC_003070:28953600- 0.00025 65_[+4]_127 chrII-NC_003071:14851801 0.00025 144_[+4]_48 chrIII-NC_003074:5216309 0.00025 53_[+4]_139 chrIII-NC_003074:1983705 0.00025 119_[+4]_73 chrIII-NC_003074:2196946 0.00025 53_[+4]_139 chrIII-NC_003074:2016186 0.00025 158_[+4]_34 chrIII-NC_003074:5216276 0.00025 86_[+4]_106 chrV-NC_003076:25900220- 0.00028 158_[+4]_34 chrIV-NC_003075:9443322- 0.00028 145_[+4]_47 chrIV-NC_003075:13017928 0.00028 143_[+4]_49 chrI-NC_003070:26097575- 0.00028 103_[+4]_89 chrI-NC_003070:22877423- 0.00028 64_[+4]_128 chrI-NC_003070:364212-36 0.00028 20_[+4]_172 chrIII-NC_003074:4340381 0.00028 104_[+4]_88 chrV-NC_003076:24240069- 0.0003 32_[+4]_160 chrIV-NC_003075:272143-2 0.0003 130_[+4]_62 chrI-NC_003070:6899616-6 0.0003 187_[+4]_5 chrIII-NC_003074:1138696 0.0003 18_[+4]_174 chrV-NC_003076:588900-58 0.00032 157_[+4]_35 chrI-NC_003070:24732448- 0.00032 55_[+4]_137 chrI-NC_003070:5137983-5 0.00032 122_[+4]_70 chrII-NC_003071:17796012 0.00032 148_[+4]_44 chrIV-NC_003075:13023617 0.00034 16_[+4]_176 chrI-NC_003070:6311195-6 0.00034 141_[+4]_51 chrII-NC_003071:12173602 0.00034 55_[+4]_137 chrIV-NC_003075:6752985- 0.00039 86_[+4]_106 chrIV-NC_003075:12379981 0.00039 164_[+4]_28 chrII-NC_003071:13036732 0.00039 11_[+4]_181 chrV-NC_003076:23391751- 0.00043 180_[+4]_12 chrIV-NC_003075:17397611 0.00043 43_[+4]_149 chrIV-NC_003075:15231300 0.00045 16_[+4]_176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=8 seqs=124 chrV-NC_003076:23773879- ( 171) TGGGCCAC 1 chrI-NC_003070:6560769-6 ( 181) TGGGCCAC 1 chrI-NC_003070:18321436- ( 49) TGGGCCAC 1 chrIII-NC_003074:1175197 ( 164) TGGGCCAC 1 chrV-NC_003076:16451031- ( 124) TGGGCCAA 1 chrV-NC_003076:18215713- ( 146) TGGTCCAC 1 chrI-NC_003070:1953781-1 ( 40) TGGTCCAC 1 chrI-NC_003070:9763126-9 ( 99) TGGTCCAC 1 chrI-NC_003070:1773727-1 ( 145) TGGGCCAA 1 chrV-NC_003076:24476843- ( 87) TGGGCCCA 1 chrV-NC_003076:9515557-9 ( 133) TGGTCCCC 1 chrIV-NC_003075:14331411 ( 56) TGGGCCCA 1 chrIV-NC_003075:8203258- ( 46) TGGTCCCC 1 chrIV-NC_003075:14266719 ( 129) TGGGCCCA 1 chrI-NC_003070:4132322-4 ( 74) TGGGCCCA 1 chrI-NC_003070:22512251- ( 106) TGGTCCCC 1 chrI-NC_003070:18942515- ( 172) TGGTCCCC 1 chrII-NC_003071:19100983 ( 161) TGGTCCCC 1 chrIII-NC_003074:2025163 ( 113) TGGGCCCA 1 chrIII-NC_003074:1395996 ( 14) TGGGCCAT 1 chrIII-NC_003074:1927636 ( 50) TGGGCCCA 1 chrV-NC_003076:973984-97 ( 169) TGGGCCCT 1 chrV-NC_003076:266618-26 ( 39) TGGGCCCT 1 chrV-NC_003076:24239588- ( 121) TGGTCCAA 1 chrV-NC_003076:24886947- ( 1) TGGTCCAA 1 chrIV-NC_003075:7369585- ( 119) TGGGCCCT 1 chrIV-NC_003075:13685900 ( 88) TGGTCCAA 1 chrI-NC_003070:25736387- ( 32) TGGTCCAA 1 chrI-NC_003070:1880787-1 ( 2) TGGTCCAA 1 chrII-NC_003071:17975979 ( 152) TGGTCCAA 1 chrIII-NC_003074:1245385 ( 167) TGGTCCAA 1 chrIII-NC_003074:4606158 ( 126) TGGTCCAA 1 chrV-NC_003076:2561208-2 ( 108) TGGACCAC 1 chrIV-NC_003075:17409244 ( 173) TGGTCCAT 1 chrIV-NC_003075:10600009 ( 86) TGGTCCAT 1 chrIV-NC_003075:8100451- ( 13) TGGTCCAT 1 chrI-NC_003070:26164485- ( 15) TGGTCCAT 1 chrI-NC_003070:28292956- ( 175) TGGTCCAT 1 chrI-NC_003070:26043093- ( 128) TGGTCCAT 1 chrI-NC_003070:26164321- ( 179) TGGTCCAT 1 chrI-NC_003070:72146-723 ( 49) TGGTCCAT 1 chrII-NC_003071:16505491 ( 32) TGGACCAC 1 chrII-NC_003071:12946397 ( 193) TGGACCAC 1 chrII-NC_003071:11941166 ( 144) TGGACCAC 1 chrII-NC_003071:17508903 ( 59) TGGTCCAT 1 chrIII-NC_003074:822690- ( 19) TGGTCCCA 1 chrIII-NC_003074:9717966 ( 141) TGGTCCAT 1 chrIII-NC_003074:8943216 ( 159) TGGACCAC 1 chrV-NC_003076:3857021-3 ( 133) TGGTCCCT 1 chrIV-NC_003075:17334368 ( 128) TGGTCCCT 1 chrIV-NC_003075:18472024 ( 26) TGGTCCCT 1 chrIV-NC_003075:14141422 ( 59) TGGACCAA 1 chrII-NC_003071:12185823 ( 53) TGGACCAA 1 chrV-NC_003076:7833316-7 ( 58) TGGACCCA 1 chrV-NC_003076:24239953- ( 112) GGGTCCAC 1 chrV-NC_003076:7266265-7 ( 193) GGGTCCAC 1 chrIV-NC_003075:17319773 ( 149) TGGACCAT 1 chrIV-NC_003075:14863096 ( 2) GGGGCCAA 1 chrI-NC_003070:8598740-8 ( 92) GGGTCCAC 1 chrI-NC_003070:4082490-4 ( 116) GGGTCCAC 1 chrI-NC_003070:24760580- ( 130) TGGACCCA 1 chrI-NC_003070:23126552- ( 58) TGGACCCA 1 chrII-NC_003071:14193902 ( 66) GGGTCCAC 1 chrII-NC_003071:10628311 ( 71) TGGACCCA 1 chrIII-NC_003074:2012113 ( 72) GGGTCCAC 1 chrIII-NC_003074:9373252 ( 10) TGGACCCA 1 chrIII-NC_003074:7503344 ( 191) TGGACCAT 1 chrIV-NC_003075:17798664 ( 107) GGGTCCAA 1 chrII-NC_003071:641561-6 ( 159) TGGGCCTC 1 chrIII-NC_003074:2011442 ( 16) TGGGCCTC 1 chrV-NC_003076:10356668- ( 105) GGGTCCCA 1 chrIV-NC_003075:17048860 ( 109) TGGGCCAG 1 chrI-NC_003070:7270500-7 ( 169) GGGTCCCA 1 chrI-NC_003070:21043046- ( 172) GGGTCCCA 1 chrI-NC_003070:25877584- ( 123) GGGTCCAT 1 chrII-NC_003071:12941156 ( 147) GGGTCCCA 1 chrII-NC_003071:19227465 ( 165) GGGACCAC 1 chrIII-NC_003074:3885203 ( 19) GGGACCAC 1 chrIII-NC_003074:2047827 ( 28) GGGTCCAT 1 chrI-NC_003070:1953904-1 ( 156) TGGTCCTC 1 chrI-NC_003070:5018083-5 ( 85) GGGTCCCT 1 chrII-NC_003071:18423231 ( 170) TGGGCCCG 1 chrII-NC_003071:17819771 ( 166) TGGTCCTC 1 chrII-NC_003071:12849576 ( 109) TGGGCCTA 1 chrIII-NC_003074:1722372 ( 34) TGGGCCTA 1 chrV-NC_003076:20014837- ( 56) TGGGCCTT 1 chrV-NC_003076:23840693- ( 85) GGGACCAA 1 chrV-NC_003076:23762535- ( 141) TGGGCCTT 1 chrIV-NC_003075:1494888- ( 130) GGGACCAA 1 chrIV-NC_003075:33765-33 ( 187) TGGGCCTT 1 chrI-NC_003070:16713723- ( 170) TGGTCCAG 1 chrI-NC_003070:28804880- ( 16) TGGGCCTT 1 chrI-NC_003070:29121010- ( 109) GGGACCAA 1 chrI-NC_003070:28953600- ( 66) TGGGCCTT 1 chrII-NC_003071:14851801 ( 145) TGGGCCTT 1 chrIII-NC_003074:5216309 ( 54) TGGGCCTT 1 chrIII-NC_003074:1983705 ( 120) TGGGCCTT 1 chrIII-NC_003074:2196946 ( 54) GGGACCAA 1 chrIII-NC_003074:2016186 ( 159) TGGGCCTT 1 chrIII-NC_003074:5216276 ( 87) TGGGCCTT 1 chrV-NC_003076:25900220- ( 159) GGGACCAT 1 chrIV-NC_003075:9443322- ( 146) TGGTCCCG 1 chrIV-NC_003075:13017928 ( 144) GGGACCCA 1 chrI-NC_003070:26097575- ( 104) GGGACCCA 1 chrI-NC_003070:22877423- ( 65) GGGACCAT 1 chrI-NC_003070:364212-36 ( 21) GGGACCCA 1 chrIII-NC_003074:4340381 ( 105) GGGACCCA 1 chrV-NC_003076:24240069- ( 33) GGGACCCT 1 chrIV-NC_003075:272143-2 ( 131) TGGTCCTT 1 chrI-NC_003070:6899616-6 ( 188) TGGACCTC 1 chrIII-NC_003074:1138696 ( 19) TGGACCTC 1 chrV-NC_003076:588900-58 ( 158) TGGACCAG 1 chrI-NC_003070:24732448- ( 56) TGGACCAG 1 chrI-NC_003070:5137983-5 ( 123) TGGCCCAC 1 chrII-NC_003071:17796012 ( 149) TGGCCCAC 1 chrIV-NC_003075:13023617 ( 17) GGGGCCAG 1 chrI-NC_003070:6311195-6 ( 142) TGGACCCG 1 chrII-NC_003071:12173602 ( 56) TGGACCTA 1 chrIV-NC_003075:6752985- ( 87) TGGCCCAT 1 chrIV-NC_003075:12379981 ( 165) TGGCCCAT 1 chrII-NC_003071:13036732 ( 12) TGGCCCAT 1 chrV-NC_003076:23391751- ( 181) TGGGCCTG 1 chrIV-NC_003075:17397611 ( 44) TGGGCCTG 1 chrIV-NC_003075:15231300 ( 17) GGGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 64462 bayes= 9.72653 E= 2.2e-022 -1360 -1360 33 130 -1360 -1360 238 -1360 -1360 -1360 238 -1360 -21 -199 59 36 -1360 238 -1360 -1360 -1360 238 -1360 -1360 77 64 -1360 -80 11 51 -125 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 2.2e-022 0.000000 0.000000 0.241935 0.758065 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.266129 0.048387 0.290323 0.395161 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.524194 0.298387 0.000000 0.177419 0.330645 0.274194 0.080645 0.314516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [TG]GG[TGA]CC[AC][ATC] -------------------------------------------------------------------------------- Time 254.16 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 8 sites = 22 llr = 233 E-value = 2.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 43:::::: pos.-specific C ::a:a::: probability G 37:a:a:a matrix T 3:::::a: bits 2.4 **** * 2.1 **** * 1.9 **** * 1.7 ****** Relative 1.4 ******* Entropy 1.2 ******* (15.3 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGCGCGTG consensus TA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI-NC_003070:8596542-8 35 2.97e-06 AGGTGGAGAT GGCGCGTG TGCGATGAGT chrI-NC_003070:23734604- 63 2.97e-06 GTTTGTGTAT GGCGCGTG TGGTATATCG chrIII-NC_003074:2098821 99 2.97e-06 CACCCACTTG GGCGCGTG TATTTCACGC chrIII-NC_003074:2144865 113 2.97e-06 CCCCCTTTTT GGCGCGTG CTTTCACATT chrV-NC_003076:4734829-4 95 7.72e-06 AATTGCAAGG AGCGCGTG GAAACGGATC chrV-NC_003076:24953160- 76 7.72e-06 TGAAGAAACA AGCGCGTG ACGAAAGAGA chrV-NC_003076:26786389- 68 7.72e-06 TCTTCAGAGA AGCGCGTG GAGGTTCTAA chrI-NC_003070:4548671-4 31 7.72e-06 GCTGGATTTA AGCGCGTG AACTCCACCT chrI-NC_003070:28804880- 164 7.72e-06 ACACAAAAAG AGCGCGTG GTTTGACTTA chrI-NC_003070:23286838- 38 7.72e-06 GCATAAGGTA AGCGCGTG TTTGTAACAT chrI-NC_003070:364212-36 151 7.72e-06 TAGAGATAGC AGCGCGTG AGGTAGAGAA chrIII-NC_003074:2011442 98 7.72e-06 CTCAATTTAG AGCGCGTG GGTATGTTTA chrV-NC_003076:26155-263 87 1.25e-05 GATTATAACA TGCGCGTG GGAGGCACGT chrV-NC_003076:10459004- 34 1.25e-05 CCACACGGGT TGCGCGTG AGAAACCACG chrII-NC_003071:14193902 114 1.25e-05 TTCTTTTACT TGCGCGTG AACTTTCAAA chrII-NC_003071:8760319- 58 1.25e-05 CGGTTTCGTA TGCGCGTG GTGGCCACGC chrV-NC_003076:7960250-7 106 1.73e-05 ATGTTACACC GACGCGTG GTCAATCTCT chrIII-NC_003074:8943216 186 1.73e-05 CTCACACGAG GACGCGTG GTTATAC chrI-NC_003070:21133615- 157 2.49e-05 GGCCATTGCT AACGCGTG GCTTGGACGT chrV-NC_003076:18358999- 95 3.25e-05 ATTATTTGTC TACGCGTG TCTCTTTGAA chrII-NC_003071:14851801 91 3.25e-05 ATTGACGAGA TACGCGTG ACAATGTCCA chrII-NC_003071:19227465 174 3.25e-05 CGGGACCACG TACGCGTG ATAAAGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI-NC_003070:8596542-8 3e-06 34_[+5]_158 chrI-NC_003070:23734604- 3e-06 62_[+5]_130 chrIII-NC_003074:2098821 3e-06 98_[+5]_94 chrIII-NC_003074:2144865 3e-06 112_[+5]_80 chrV-NC_003076:4734829-4 7.7e-06 94_[+5]_98 chrV-NC_003076:24953160- 7.7e-06 75_[+5]_117 chrV-NC_003076:26786389- 7.7e-06 67_[+5]_125 chrI-NC_003070:4548671-4 7.7e-06 30_[+5]_162 chrI-NC_003070:28804880- 7.7e-06 163_[+5]_29 chrI-NC_003070:23286838- 7.7e-06 37_[+5]_155 chrI-NC_003070:364212-36 7.7e-06 150_[+5]_42 chrIII-NC_003074:2011442 7.7e-06 97_[+5]_95 chrV-NC_003076:26155-263 1.3e-05 86_[+5]_106 chrV-NC_003076:10459004- 1.3e-05 33_[+5]_159 chrII-NC_003071:14193902 1.3e-05 113_[+5]_79 chrII-NC_003071:8760319- 1.3e-05 57_[+5]_135 chrV-NC_003076:7960250-7 1.7e-05 105_[+5]_87 chrIII-NC_003074:8943216 1.7e-05 185_[+5]_7 chrI-NC_003070:21133615- 2.5e-05 156_[+5]_36 chrV-NC_003076:18358999- 3.3e-05 94_[+5]_98 chrII-NC_003071:14851801 3.3e-05 90_[+5]_102 chrII-NC_003071:19227465 3.3e-05 173_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=8 seqs=22 chrI-NC_003070:8596542-8 ( 35) GGCGCGTG 1 chrI-NC_003070:23734604- ( 63) GGCGCGTG 1 chrIII-NC_003074:2098821 ( 99) GGCGCGTG 1 chrIII-NC_003074:2144865 ( 113) GGCGCGTG 1 chrV-NC_003076:4734829-4 ( 95) AGCGCGTG 1 chrV-NC_003076:24953160- ( 76) AGCGCGTG 1 chrV-NC_003076:26786389- ( 68) AGCGCGTG 1 chrI-NC_003070:4548671-4 ( 31) AGCGCGTG 1 chrI-NC_003070:28804880- ( 164) AGCGCGTG 1 chrI-NC_003070:23286838- ( 38) AGCGCGTG 1 chrI-NC_003070:364212-36 ( 151) AGCGCGTG 1 chrIII-NC_003074:2011442 ( 98) AGCGCGTG 1 chrV-NC_003076:26155-263 ( 87) TGCGCGTG 1 chrV-NC_003076:10459004- ( 34) TGCGCGTG 1 chrII-NC_003071:14193902 ( 114) TGCGCGTG 1 chrII-NC_003071:8760319- ( 58) TGCGCGTG 1 chrV-NC_003076:7960250-7 ( 106) GACGCGTG 1 chrIII-NC_003074:8943216 ( 186) GACGCGTG 1 chrI-NC_003070:21133615- ( 157) AACGCGTG 1 chrV-NC_003076:18358999- ( 95) TACGCGTG 1 chrII-NC_003071:14851801 ( 91) TACGCGTG 1 chrII-NC_003071:19227465 ( 174) TACGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 64462 bayes= 12.543 E= 2.6e-002 41 -1110 50 4 -17 -1110 192 -1110 -1110 238 -1110 -1110 -1110 -1110 238 -1110 -1110 238 -1110 -1110 -1110 -1110 238 -1110 -1110 -1110 -1110 169 -1110 -1110 238 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.6e-002 0.409091 0.000000 0.272727 0.318182 0.272727 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- [ATG][GA]CGCGTG -------------------------------------------------------------------------------- Time 312.93 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 10 sites = 53 llr = 475 E-value = 1.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A aaa715:7aa pos.-specific C ::::::2::: probability G ::::148::: matrix T :::381:3:: bits 2.4 2.1 1.9 1.7 *** * ** Relative 1.4 *** * ** Entropy 1.2 *** * ** (12.9 bits) 1.0 *** * ** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel AAAATAGAAA consensus T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:24239588- 82 7.61e-06 TGTCTTGACA AAAATAGAAA CATTTGTGGT chrI-NC_003070:16713584- 106 7.61e-06 AACAATTCTA AAAATGGAAA GAGTCTTTGG chrI-NC_003070:29406817- 89 7.61e-06 TCCAAGTAGG AAAATAGAAA AGTGAGATAG chrI-NC_003070:29121010- 81 7.61e-06 TGTGTGCACA AAAATAGAAA TAATGGGCAA chrI-NC_003070:24331613- 171 7.61e-06 CTTCTTTTTT AAAATAGAAA TTATTTTCCT chrIII-NC_003074:2214119 67 7.61e-06 TCAACGAACT AAAATAGAAA TATACTACTA chrIII-NC_003074:4606158 89 7.61e-06 ATGAGTGACT AAAATGGAAA TTTATGCACT chrIII-NC_003074:665060- 38 7.61e-06 CTCGACACCG AAAATAGAAA CCGCACCAAC chrIII-NC_003074:2012113 91 7.61e-06 TGAGTTACTA AAAATGGAAA GTATTGCCTA chrIII-NC_003074:4829131 87 7.61e-06 TGCTAATATA AAAATGGAAA TAATCAAGTG chrV-NC_003076:2561208-2 57 1.53e-05 TGCCATGGAA AAATTGGAAA GTTCAGATCC chrV-NC_003076:14755579- 110 1.53e-05 CCATTTATCC AAATTAGAAA TTGTTTGGTA chrIV-NC_003075:6771910- 40 1.53e-05 TTCGATGATG AAATTAGAAA GTTCTCACTC chrIV-NC_003075:6771834- 116 1.53e-05 TTCGATGATG AAATTAGAAA GTTCTCACTC chrII-NC_003071:19015799 74 1.53e-05 CCTCCATGCA AAATTGGAAA GCCCTAAGAC chrII-NC_003071:18095440 135 1.53e-05 AAATCAACCA AAATTAGAAA AATCCAACTC chrIII-NC_003074:1138696 143 1.53e-05 ACAATCAACC AAATTAGAAA GTGTAGAGGA chrIII-NC_003074:1976038 63 1.53e-05 AGACTTTCCT AAATTAGAAA GTCTCTGTTC chrIV-NC_003075:18472024 125 2.29e-05 CGGAAAATTA AAAATAGTAA TTGACACGTC chrIV-NC_003075:16860561 87 2.29e-05 TCTTCTACCG AAAATGGTAA TGCTGACCAA chrIV-NC_003075:12379981 92 2.29e-05 TCAAAAAACA AAAATAGTAA ACAATCACAT chrI-NC_003070:19070051- 117 2.29e-05 ATGGAGTACC AAAATAGTAA TATGTTCCAT chrII-NC_003071:11771575 133 2.29e-05 AACATTTCCA AAAATGGTAA GTCCAAGAAT chrII-NC_003071:9770577- 54 2.29e-05 TTGATGTACC AAAATAGTAA GTGATTCCAA chrIII-NC_003074:5236683 153 2.29e-05 TTTCTTTCCT AAAATAGTAA CAATTCACAC chrIII-NC_003074:5236747 89 2.29e-05 TTTCTTTCCT AAAATAGTAA CAATTCACAC chrII-NC_003071:12946397 118 2.77e-05 CCAAAAGTTG AAAAGAGAAA AGAAAGAGAA chrIII-NC_003074:2056022 17 2.77e-05 GATGTTTACG AAAAGAGAAA ACAAACAAAC chrV-NC_003076:5962181-5 181 3.53e-05 TTTATAGAAT AAAATACAAA CAGAAGTTTG chrIV-NC_003075:16613081 49 4.77e-05 TTGTCCTTCA AAATTAGTAA TAGTCATTGT chrI-NC_003070:23412259- 133 4.77e-05 TCCAAGATAT AAATTGGTAA GGTCCACGCG chrI-NC_003070:8166392-8 8 4.77e-05 TATTTTG AAAATTGAAA TGTATACTAA chrII-NC_003071:11941166 28 4.77e-05 AAACTGAGCC AAATTAGTAA GACAAACACA chrV-NC_003076:15997367- 132 6.00e-05 GACAATATCA AAAAAGGAAA CATTTAACAA chrIV-NC_003075:1494888- 99 6.00e-05 ACCCAGAACG AAAAAGGAAA CTTTTTCCTA chrII-NC_003071:17819771 79 6.00e-05 GGGATTACCA AAAAAGGAAA GTTTCCAAAA chrIII-NC_003074:2037905 164 6.48e-05 TCCAATAGGT AAAAGAGTAA CCTTTTTTCT chrIII-NC_003074:1885525 33 6.48e-05 CAAGATACCC AAAAGGGTAA AACGACACGC chrV-NC_003076:23762535- 131 7.71e-05 ATATGTTTAC AAATTACAAA TGGGCCTTAT chrV-NC_003076:5529995-5 118 7.71e-05 CTCACCGAGA AAAACAGAAA AAGCTGCTAT chrI-NC_003070:4082490-4 93 7.71e-05 TTATTGACCA AAAACGGAAA CTGATGTACT chrIII-NC_003074:2115360 128 7.71e-05 CGAACACGAC AAATTGCAAA AGAATAAAAA chrIII-NC_003074:2011442 152 7.71e-05 GCCGCCAGAC AAATTGCAAA CCGAAATTGA chrI-NC_003070:24760580- 60 8.19e-05 ATATTTCTAT AAATTTGAAA ATAAACAATT chrI-NC_003070:24732448- 30 9.43e-05 ATTAGAAGTG AAAATTGTAA CCACAAGAGT chrV-NC_003076:10356668- 82 1.11e-04 AACCATTCCC AAATAGGAAA AACATTTGGA chrV-NC_003076:6833045-6 138 1.11e-04 TTTAATCCTT AAAAGACAAA ATATCTTTAA chrV-NC_003076:9480398-9 62 1.11e-04 AAATTTGCCA AAAGTGGAAA CATGTCGACC chrI-NC_003070:11472862- 61 1.11e-04 AATAAAGCCC AAAAGACAAA AATCTAAAGT chrV-NC_003076:4460424-4 185 1.24e-04 TATTCCCTTC AAAATGGGAA TATTAT chrV-NC_003076:7833316-7 188 1.58e-04 CTGTGACCCA AAAATTCAAA GGA chrV-NC_003076:9515557-9 92 1.58e-04 ATTCGAAAAC AAAATTCAAA TAGTGTGAAT chrII-NC_003071:6920409- 66 1.58e-04 AACATCATCA AGAATAGAAA TCTCTTCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:24239588- 7.6e-06 81_[+6]_109 chrI-NC_003070:16713584- 7.6e-06 105_[+6]_85 chrI-NC_003070:29406817- 7.6e-06 88_[+6]_102 chrI-NC_003070:29121010- 7.6e-06 80_[+6]_110 chrI-NC_003070:24331613- 7.6e-06 170_[+6]_20 chrIII-NC_003074:2214119 7.6e-06 66_[+6]_124 chrIII-NC_003074:4606158 7.6e-06 88_[+6]_102 chrIII-NC_003074:665060- 7.6e-06 37_[+6]_153 chrIII-NC_003074:2012113 7.6e-06 90_[+6]_100 chrIII-NC_003074:4829131 7.6e-06 86_[+6]_104 chrV-NC_003076:2561208-2 1.5e-05 56_[+6]_134 chrV-NC_003076:14755579- 1.5e-05 109_[+6]_81 chrIV-NC_003075:6771910- 1.5e-05 39_[+6]_151 chrIV-NC_003075:6771834- 1.5e-05 115_[+6]_75 chrII-NC_003071:19015799 1.5e-05 73_[+6]_117 chrII-NC_003071:18095440 1.5e-05 134_[+6]_56 chrIII-NC_003074:1138696 1.5e-05 142_[+6]_48 chrIII-NC_003074:1976038 1.5e-05 62_[+6]_128 chrIV-NC_003075:18472024 2.3e-05 124_[+6]_66 chrIV-NC_003075:16860561 2.3e-05 86_[+6]_104 chrIV-NC_003075:12379981 2.3e-05 91_[+6]_99 chrI-NC_003070:19070051- 2.3e-05 116_[+6]_74 chrII-NC_003071:11771575 2.3e-05 132_[+6]_58 chrII-NC_003071:9770577- 2.3e-05 53_[+6]_137 chrIII-NC_003074:5236683 2.3e-05 152_[+6]_38 chrIII-NC_003074:5236747 2.3e-05 88_[+6]_102 chrII-NC_003071:12946397 2.8e-05 117_[+6]_73 chrIII-NC_003074:2056022 2.8e-05 16_[+6]_174 chrV-NC_003076:5962181-5 3.5e-05 180_[+6]_10 chrIV-NC_003075:16613081 4.8e-05 48_[+6]_142 chrI-NC_003070:23412259- 4.8e-05 132_[+6]_58 chrI-NC_003070:8166392-8 4.8e-05 7_[+6]_183 chrII-NC_003071:11941166 4.8e-05 27_[+6]_163 chrV-NC_003076:15997367- 6e-05 131_[+6]_59 chrIV-NC_003075:1494888- 6e-05 98_[+6]_92 chrII-NC_003071:17819771 6e-05 78_[+6]_112 chrIII-NC_003074:2037905 6.5e-05 163_[+6]_27 chrIII-NC_003074:1885525 6.5e-05 32_[+6]_158 chrV-NC_003076:23762535- 7.7e-05 130_[+6]_60 chrV-NC_003076:5529995-5 7.7e-05 117_[+6]_73 chrI-NC_003070:4082490-4 7.7e-05 92_[+6]_98 chrIII-NC_003074:2115360 7.7e-05 127_[+6]_63 chrIII-NC_003074:2011442 7.7e-05 151_[+6]_39 chrI-NC_003070:24760580- 8.2e-05 59_[+6]_131 chrI-NC_003070:24732448- 9.4e-05 29_[+6]_161 chrV-NC_003076:10356668- 0.00011 81_[+6]_109 chrV-NC_003076:6833045-6 0.00011 137_[+6]_53 chrV-NC_003076:9480398-9 0.00011 61_[+6]_129 chrI-NC_003070:11472862- 0.00011 60_[+6]_130 chrV-NC_003076:4460424-4 0.00012 184_[+6]_6 chrV-NC_003076:7833316-7 0.00016 187_[+6]_3 chrV-NC_003076:9515557-9 0.00016 91_[+6]_99 chrII-NC_003071:6920409- 0.00016 65_[+6]_125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=10 seqs=53 chrV-NC_003076:24239588- ( 82) AAAATAGAAA 1 chrI-NC_003070:16713584- ( 106) AAAATGGAAA 1 chrI-NC_003070:29406817- ( 89) AAAATAGAAA 1 chrI-NC_003070:29121010- ( 81) AAAATAGAAA 1 chrI-NC_003070:24331613- ( 171) AAAATAGAAA 1 chrIII-NC_003074:2214119 ( 67) AAAATAGAAA 1 chrIII-NC_003074:4606158 ( 89) AAAATGGAAA 1 chrIII-NC_003074:665060- ( 38) AAAATAGAAA 1 chrIII-NC_003074:2012113 ( 91) AAAATGGAAA 1 chrIII-NC_003074:4829131 ( 87) AAAATGGAAA 1 chrV-NC_003076:2561208-2 ( 57) AAATTGGAAA 1 chrV-NC_003076:14755579- ( 110) AAATTAGAAA 1 chrIV-NC_003075:6771910- ( 40) AAATTAGAAA 1 chrIV-NC_003075:6771834- ( 116) AAATTAGAAA 1 chrII-NC_003071:19015799 ( 74) AAATTGGAAA 1 chrII-NC_003071:18095440 ( 135) AAATTAGAAA 1 chrIII-NC_003074:1138696 ( 143) AAATTAGAAA 1 chrIII-NC_003074:1976038 ( 63) AAATTAGAAA 1 chrIV-NC_003075:18472024 ( 125) AAAATAGTAA 1 chrIV-NC_003075:16860561 ( 87) AAAATGGTAA 1 chrIV-NC_003075:12379981 ( 92) AAAATAGTAA 1 chrI-NC_003070:19070051- ( 117) AAAATAGTAA 1 chrII-NC_003071:11771575 ( 133) AAAATGGTAA 1 chrII-NC_003071:9770577- ( 54) AAAATAGTAA 1 chrIII-NC_003074:5236683 ( 153) AAAATAGTAA 1 chrIII-NC_003074:5236747 ( 89) AAAATAGTAA 1 chrII-NC_003071:12946397 ( 118) AAAAGAGAAA 1 chrIII-NC_003074:2056022 ( 17) AAAAGAGAAA 1 chrV-NC_003076:5962181-5 ( 181) AAAATACAAA 1 chrIV-NC_003075:16613081 ( 49) AAATTAGTAA 1 chrI-NC_003070:23412259- ( 133) AAATTGGTAA 1 chrI-NC_003070:8166392-8 ( 8) AAAATTGAAA 1 chrII-NC_003071:11941166 ( 28) AAATTAGTAA 1 chrV-NC_003076:15997367- ( 132) AAAAAGGAAA 1 chrIV-NC_003075:1494888- ( 99) AAAAAGGAAA 1 chrII-NC_003071:17819771 ( 79) AAAAAGGAAA 1 chrIII-NC_003074:2037905 ( 164) AAAAGAGTAA 1 chrIII-NC_003074:1885525 ( 33) AAAAGGGTAA 1 chrV-NC_003076:23762535- ( 131) AAATTACAAA 1 chrV-NC_003076:5529995-5 ( 118) AAAACAGAAA 1 chrI-NC_003070:4082490-4 ( 93) AAAACGGAAA 1 chrIII-NC_003074:2115360 ( 128) AAATTGCAAA 1 chrIII-NC_003074:2011442 ( 152) AAATTGCAAA 1 chrI-NC_003070:24760580- ( 60) AAATTTGAAA 1 chrI-NC_003070:24732448- ( 30) AAAATTGTAA 1 chrV-NC_003076:10356668- ( 82) AAATAGGAAA 1 chrV-NC_003076:6833045-6 ( 138) AAAAGACAAA 1 chrV-NC_003076:9480398-9 ( 62) AAAGTGGAAA 1 chrI-NC_003070:11472862- ( 61) AAAAGACAAA 1 chrV-NC_003076:4460424-4 ( 185) AAAATGGGAA 1 chrV-NC_003076:7833316-7 ( 188) AAAATTCAAA 1 chrV-NC_003076:9515557-9 ( 92) AAAATTCAAA 1 chrII-NC_003071:6920409- ( 66) AGAATAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 10.7824 E= 1.9e+001 170 -1237 -1237 -1237 168 -1237 -335 -1237 170 -1237 -1237 -1237 115 -1237 -335 -3 -202 -235 -76 132 83 -1237 90 -171 -1237 -35 214 -1237 122 -1237 -335 -23 170 -1237 -1237 -1237 170 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 53 E= 1.9e+001 1.000000 0.000000 0.000000 0.000000 0.981132 0.000000 0.018868 0.000000 1.000000 0.000000 0.000000 0.000000 0.679245 0.000000 0.018868 0.301887 0.075472 0.037736 0.113208 0.773585 0.547170 0.000000 0.358491 0.094340 0.000000 0.150943 0.849057 0.000000 0.716981 0.000000 0.018868 0.264151 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- AAA[AT]T[AG]G[AT]AA -------------------------------------------------------------------------------- Time 371.46 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 9 sites = 10 llr = 126 E-value = 1.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :a:1aa::a pos.-specific C a:a9::aa: probability G ::::::::: matrix T ::::::::: bits 2.4 * * ** 2.1 * * ** 1.9 * ** ** 1.7 ********* Relative 1.4 ********* Entropy 1.2 ********* (18.2 bits) 1.0 ********* 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel CACCAACCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- chrIV-NC_003075:17798664 180 2.32e-06 AAAAATGTGA CACCAACCA AAGATCTCGC chrI-NC_003070:1143756-1 139 2.32e-06 TAAGCTGCTC CACCAACCA ATTAAAACAC chrI-NC_003070:6560769-6 162 2.32e-06 CCCCACAAAT CACCAACCA TTGATTGAGA chrI-NC_003070:20876436- 2 2.32e-06 T CACCAACCA TTAGTCTTTT chrI-NC_003070:1143820-1 75 2.32e-06 TAAGCTGCTC CACCAACCA ATTAAAACAC chrII-NC_003071:19015799 97 2.32e-06 CTAAGACGAA CACCAACCA TACGCCATCG chrII-NC_003071:19491297 46 2.32e-06 TCGGTCGTAG CACCAACCA CATTCGATTT chrIII-NC_003074:665060- 51 2.32e-06 ATAGAAACCG CACCAACCA AAATTAGACT chrIII-NC_003074:2016186 129 2.32e-06 AAGTGATCAC CACCAACCA CTTCTTATCA chrIII-NC_003074:5470385 125 6.02e-06 TATTGGAATC CACAAACCA AAGTCACTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV-NC_003075:17798664 2.3e-06 179_[+7]_12 chrI-NC_003070:1143756-1 2.3e-06 138_[+7]_53 chrI-NC_003070:6560769-6 2.3e-06 161_[+7]_30 chrI-NC_003070:20876436- 2.3e-06 1_[+7]_190 chrI-NC_003070:1143820-1 2.3e-06 74_[+7]_117 chrII-NC_003071:19015799 2.3e-06 96_[+7]_95 chrII-NC_003071:19491297 2.3e-06 45_[+7]_146 chrIII-NC_003074:665060- 2.3e-06 50_[+7]_141 chrIII-NC_003074:2016186 2.3e-06 128_[+7]_63 chrIII-NC_003074:5470385 6e-06 124_[+7]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=9 seqs=10 chrIV-NC_003075:17798664 ( 180) CACCAACCA 1 chrI-NC_003070:1143756-1 ( 139) CACCAACCA 1 chrI-NC_003070:6560769-6 ( 162) CACCAACCA 1 chrI-NC_003070:20876436- ( 2) CACCAACCA 1 chrI-NC_003070:1143820-1 ( 75) CACCAACCA 1 chrII-NC_003071:19015799 ( 97) CACCAACCA 1 chrII-NC_003071:19491297 ( 46) CACCAACCA 1 chrIII-NC_003074:665060- ( 51) CACCAACCA 1 chrIII-NC_003074:2016186 ( 129) CACCAACCA 1 chrIII-NC_003074:5470385 ( 125) CACAAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 64128 bayes= 12.0808 E= 1.9e+001 -997 238 -997 -997 170 -997 -997 -997 -997 238 -997 -997 -161 223 -997 -997 170 -997 -997 -997 170 -997 -997 -997 -997 238 -997 -997 -997 238 -997 -997 170 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 10 E= 1.9e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- CACCAACCA -------------------------------------------------------------------------------- Time 429.52 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 10 sites = 40 llr = 376 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A :::1:1951: pos.-specific C 7:::a2:::: probability G 2::::::::: matrix T 1aa9:8159a bits 2.4 * 2.1 * 1.9 * 1.7 * * * Relative 1.4 **** * Entropy 1.2 ***** * ** (13.6 bits) 1.0 ******* ** 0.7 ******* ** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CTTTCTATTT consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrI-NC_003070:7930400-7 77 3.04e-06 GTGAATGAGA CTTTCTATTT TTGGGAGTAG chrII-NC_003071:8813586- 68 3.04e-06 CATCTTTCAT CTTTCTATTT CTAGCAGAGT chrIII-NC_003074:5216309 117 3.04e-06 TGGTTTCTCT CTTTCTATTT CCAATCAATA chrIII-NC_003074:5216276 150 3.04e-06 TGGTTTCTCT CTTTCTATTT CCAATCAATA chrV-NC_003076:973984-97 153 6.07e-06 GCCAGGTCAG CTTTCTAATT TGGAACTGGG chrV-NC_003076:20014837- 141 6.07e-06 TAAAGTAGAG CTTTCTAATT CGAGCAAGTA chrI-NC_003070:72146-723 122 6.07e-06 ATATCCAAAA CTTTCTAATT TGGTTAGAGG chrIII-NC_003074:5470385 81 6.07e-06 AAATAGACGT CTTTCTAATT GGAGTTTGTC chrIII-NC_003074:2115360 91 6.07e-06 AATCTTTGGA CTTTCTAATT TTGGGAACAT chrII-NC_003071:9580055- 107 7.96e-06 ACACGATTTA CTTTCCATTT CAGTCGTCTT chrV-NC_003076:1375822-1 130 9.84e-06 CGTCACCTGG CTTTCCAATT TCCAAATAAA chrI-NC_003070:27294385- 107 9.84e-06 CAGCCAAATT CTTTCCAATT ATGGAATGTT chrIII-NC_003074:1983705 98 9.84e-06 AAATTGCACA CTTTCCAATT TAGTACTTTT chrII-NC_003071:18095440 107 1.29e-05 AAGCCAAAAT GTTTCTATTT ATAAATCAAA chrIII-NC_003074:1722372 167 1.29e-05 GCTCTGTTTT GTTTCTATTT TCATGACTTT chrIII-NC_003074:1009490 22 1.29e-05 TTTATAAAAA GTTTCTATTT TCGTTCTTTT chrIII-NC_003074:4358519 27 1.59e-05 TTTAGAAATA GTTTCTAATT CTGGAGGAAA chrIII-NC_003074:4359967 171 1.59e-05 GGAACTATAA GTTTCTAATT TTAGGACTTA chrI-NC_003070:28292956- 7 2.57e-05 TCTTTT CTTTCTATAT ATTAAAAGTG chrI-NC_003070:11472862- 150 2.57e-05 TGATTCTAAA GTTTCCATTT GTTTTGTTTT chrI-NC_003070:4548671-4 91 2.57e-05 TCCATGGATA CTTTCTATAT TTGGAAAGTT chrI-NC_003070:25335093- 175 2.57e-05 TTTACTCGCA TTTTCTATTT ATGTTTAAAG chrII-NC_003071:14489582 112 2.57e-05 ACCCCGCTTA CTTTCTATAT CTGTACACTT chrV-NC_003076:8376552-8 158 3.55e-05 GCATGGAAGA TTTTCTAATT ATACAACTCA chrV-NC_003076:8376625-8 85 3.55e-05 GCATGGAAGA TTTTCTAATT ATACAACTCA chrIV-NC_003075:17409244 88 3.55e-05 ACTATCACGA GTTTCCAATT TGGGAAAAAG chrI-NC_003070:28467619- 35 3.55e-05 TAGGGCCTAT TTTTCTAATT GGCCCGTATA chrI-NC_003070:5018083-5 67 3.55e-05 CGGTTGCAAT CTTTCTAAAT TTCCAAATGG chrV-NC_003076:266618-26 60 4.16e-05 GAGTCACGGC CTTTCTTTTT ACTTTTTTTA chrI-NC_003070:29399321- 98 4.16e-05 AAGAAGAAGA CTTACTATTT TTGGATATTT chrIII-NC_003074:1945323 105 4.16e-05 CACGACACGA CTTACTATTT GGAGTCATGG chrIII-NC_003074:1846867 80 4.16e-05 GATTTCCCAA CTTACTATTT TTGGAAGAAA chrI-NC_003070:5968015-5 184 4.35e-05 ATTCGGAAAG CTTTCTACTT CGGGAAA chrV-NC_003076:26807915- 45 5.25e-05 CACCTGTACT CTTTCTTATT TTGGTATCTT chrV-NC_003076:26806403- 141 5.55e-05 GTATCTACCT CTTTCAAATT TACAAGTACT chrIV-NC_003075:12769653 148 5.55e-05 TAATTAGTTA CTTTCAAATT TTAAATAAAT chrIII-NC_003074:2012113 157 6.05e-05 AAGTGATAAA TTTTCCATTT ATGTAAACTG chrIV-NC_003075:7369585- 171 6.24e-05 TCTTTTTTGT CTTTCTCTTT CGCATTATCT chrV-NC_003076:448654-44 30 6.91e-05 CATTTTACAA CCTTCTATTT TTGAGAGACC chrI-NC_003070:6174672-6 174 7.48e-05 GTTTAGGACT CTTTCCTTTT ATAGAACAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI-NC_003070:7930400-7 3e-06 76_[+8]_114 chrII-NC_003071:8813586- 3e-06 67_[+8]_123 chrIII-NC_003074:5216309 3e-06 116_[+8]_74 chrIII-NC_003074:5216276 3e-06 149_[+8]_41 chrV-NC_003076:973984-97 6.1e-06 152_[+8]_38 chrV-NC_003076:20014837- 6.1e-06 140_[+8]_50 chrI-NC_003070:72146-723 6.1e-06 121_[+8]_69 chrIII-NC_003074:5470385 6.1e-06 80_[+8]_110 chrIII-NC_003074:2115360 6.1e-06 90_[+8]_100 chrII-NC_003071:9580055- 8e-06 106_[+8]_84 chrV-NC_003076:1375822-1 9.8e-06 129_[+8]_61 chrI-NC_003070:27294385- 9.8e-06 106_[+8]_84 chrIII-NC_003074:1983705 9.8e-06 97_[+8]_93 chrII-NC_003071:18095440 1.3e-05 106_[+8]_84 chrIII-NC_003074:1722372 1.3e-05 166_[+8]_24 chrIII-NC_003074:1009490 1.3e-05 21_[+8]_169 chrIII-NC_003074:4358519 1.6e-05 26_[+8]_164 chrIII-NC_003074:4359967 1.6e-05 170_[+8]_20 chrI-NC_003070:28292956- 2.6e-05 6_[+8]_184 chrI-NC_003070:11472862- 2.6e-05 149_[+8]_41 chrI-NC_003070:4548671-4 2.6e-05 90_[+8]_100 chrI-NC_003070:25335093- 2.6e-05 174_[+8]_16 chrII-NC_003071:14489582 2.6e-05 111_[+8]_79 chrV-NC_003076:8376552-8 3.5e-05 157_[+8]_33 chrV-NC_003076:8376625-8 3.5e-05 84_[+8]_106 chrIV-NC_003075:17409244 3.5e-05 87_[+8]_103 chrI-NC_003070:28467619- 3.5e-05 34_[+8]_156 chrI-NC_003070:5018083-5 3.5e-05 66_[+8]_124 chrV-NC_003076:266618-26 4.2e-05 59_[+8]_131 chrI-NC_003070:29399321- 4.2e-05 97_[+8]_93 chrIII-NC_003074:1945323 4.2e-05 104_[+8]_86 chrIII-NC_003074:1846867 4.2e-05 79_[+8]_111 chrI-NC_003070:5968015-5 4.3e-05 183_[+8]_7 chrV-NC_003076:26807915- 5.3e-05 44_[+8]_146 chrV-NC_003076:26806403- 5.6e-05 140_[+8]_50 chrIV-NC_003075:12769653 5.6e-05 147_[+8]_43 chrIII-NC_003074:2012113 6e-05 156_[+8]_34 chrIV-NC_003075:7369585- 6.2e-05 170_[+8]_20 chrV-NC_003076:448654-44 6.9e-05 29_[+8]_161 chrI-NC_003070:6174672-6 7.5e-05 173_[+8]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=10 seqs=40 chrI-NC_003070:7930400-7 ( 77) CTTTCTATTT 1 chrII-NC_003071:8813586- ( 68) CTTTCTATTT 1 chrIII-NC_003074:5216309 ( 117) CTTTCTATTT 1 chrIII-NC_003074:5216276 ( 150) CTTTCTATTT 1 chrV-NC_003076:973984-97 ( 153) CTTTCTAATT 1 chrV-NC_003076:20014837- ( 141) CTTTCTAATT 1 chrI-NC_003070:72146-723 ( 122) CTTTCTAATT 1 chrIII-NC_003074:5470385 ( 81) CTTTCTAATT 1 chrIII-NC_003074:2115360 ( 91) CTTTCTAATT 1 chrII-NC_003071:9580055- ( 107) CTTTCCATTT 1 chrV-NC_003076:1375822-1 ( 130) CTTTCCAATT 1 chrI-NC_003070:27294385- ( 107) CTTTCCAATT 1 chrIII-NC_003074:1983705 ( 98) CTTTCCAATT 1 chrII-NC_003071:18095440 ( 107) GTTTCTATTT 1 chrIII-NC_003074:1722372 ( 167) GTTTCTATTT 1 chrIII-NC_003074:1009490 ( 22) GTTTCTATTT 1 chrIII-NC_003074:4358519 ( 27) GTTTCTAATT 1 chrIII-NC_003074:4359967 ( 171) GTTTCTAATT 1 chrI-NC_003070:28292956- ( 7) CTTTCTATAT 1 chrI-NC_003070:11472862- ( 150) GTTTCCATTT 1 chrI-NC_003070:4548671-4 ( 91) CTTTCTATAT 1 chrI-NC_003070:25335093- ( 175) TTTTCTATTT 1 chrII-NC_003071:14489582 ( 112) CTTTCTATAT 1 chrV-NC_003076:8376552-8 ( 158) TTTTCTAATT 1 chrV-NC_003076:8376625-8 ( 85) TTTTCTAATT 1 chrIV-NC_003075:17409244 ( 88) GTTTCCAATT 1 chrI-NC_003070:28467619- ( 35) TTTTCTAATT 1 chrI-NC_003070:5018083-5 ( 67) CTTTCTAAAT 1 chrV-NC_003076:266618-26 ( 60) CTTTCTTTTT 1 chrI-NC_003070:29399321- ( 98) CTTACTATTT 1 chrIII-NC_003074:1945323 ( 105) CTTACTATTT 1 chrIII-NC_003074:1846867 ( 80) CTTACTATTT 1 chrI-NC_003070:5968015-5 ( 184) CTTTCTACTT 1 chrV-NC_003076:26807915- ( 45) CTTTCTTATT 1 chrV-NC_003076:26806403- ( 141) CTTTCAAATT 1 chrIV-NC_003075:12769653 ( 148) CTTTCAAATT 1 chrIII-NC_003074:2012113 ( 157) TTTTCCATTT 1 chrIV-NC_003075:7369585- ( 171) CTTTCTCTTT 1 chrV-NC_003076:448654-44 ( 30) CCTTCTATTT 1 chrI-NC_003070:6174672-6 ( 174) CTTTCCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 10.89 E= 1.1e+003 -1197 187 -14 -130 -1197 -294 -1197 166 -1197 -1197 -1197 170 -203 -1197 -1197 158 -1197 238 -1197 -1197 -262 6 -1197 128 155 -294 -1197 -204 55 -294 -1197 77 -162 -1197 -1197 154 -1197 -1197 -1197 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 40 E= 1.1e+003 0.000000 0.700000 0.175000 0.125000 0.000000 0.025000 0.000000 0.975000 0.000000 0.000000 0.000000 1.000000 0.075000 0.000000 0.000000 0.925000 0.000000 1.000000 0.000000 0.000000 0.050000 0.200000 0.000000 0.750000 0.900000 0.025000 0.000000 0.075000 0.450000 0.025000 0.000000 0.525000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- CTTTC[TC]A[TA]TT -------------------------------------------------------------------------------- Time 487.44 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 10 sites = 20 llr = 222 E-value = 7.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A ::a:::1a:1 pos.-specific C 97:a::9:18 probability G 14::a::131 matrix T 1::1:a::72 bits 2.4 * 2.1 ** 1.9 ** * 1.7 * ***** Relative 1.4 ******** Entropy 1.2 ******** * (16.0 bits) 1.0 ******** * 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CCACGTCATC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:973984-97 96 4.51e-07 ATGGTGGGTC CCACGTCATC TTGAGATTTT chrI-NC_003070:4082490-4 176 4.51e-07 CAACTTGTAG CCACGTCATC TTAAGTCAAA chrII-NC_003071:12326803 96 4.51e-07 CACAAAATCA CCACGTCATC AATCCTTGTC chrIV-NC_003075:6906145- 96 7.31e-07 CTCGCTCTCT CCACGTCAGC AACTCTTGCC chrI-NC_003070:26164321- 148 7.31e-07 ACATCTAAGC CCACGTCAGC TGTAATACAC chrII-NC_003071:12108197 96 7.31e-07 CAAAATAGTG CCACGTCAGC AACTAACAGG chrIV-NC_003075:16256073 82 1.18e-06 TGGTTAGTGT CGACGTCATC ACTTCTGACA chrI-NC_003070:23126552- 127 2.47e-06 CAACTTGTCA CCACGTCATT ATTTCTGACT chrII-NC_003071:7935107- 121 2.47e-06 TTCCTTCTCC CCACGTCATT CAGTTTCTTC chrV-NC_003076:1212725-1 65 4.21e-06 TCAACGGTGT CGACGTCACC GGGATTCATA chrV-NC_003076:25086812- 67 6.28e-06 GCTTCAATGG CCACGTAATC AACTGACATG chrI-NC_003070:7340458-7 96 6.28e-06 CGTGGCTCTG CCACGTAATC TTAGACCGGC chrIII-NC_003074:1138696 75 6.28e-06 TTCGGTCTAT CGACGTCATT CCTGTGGGTG chrV-NC_003076:4460424-4 81 8.92e-06 AGGTGTAAAA GCACGTCAGC AAGAGAAAAC chrI-NC_003070:28804880- 96 1.04e-05 ACCCATCCCT CCACGTCATA ACTACACGCG chrIII-NC_003074:1773973 151 1.04e-05 AATATGGGCG TGACGTCATC TCCAATCTTT chrII-NC_003071:8813586- 169 1.17e-05 TATTCTTAAA CGACGTCATG TAATCTCTCC chrII-NC_003071:560631-5 181 1.17e-05 TTCTCGTTTC CGACGTCGGC CGTTTCTTTT chrI-NC_003070:30371959- 43 1.29e-05 ATCACAAAGT CCATGTCATC TGTCACCTAC chrI-NC_003070:6311195-6 172 1.38e-05 CAATAATAAA TGACGTCAGC CCAAATGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:973984-97 4.5e-07 95_[+9]_95 chrI-NC_003070:4082490-4 4.5e-07 175_[+9]_15 chrII-NC_003071:12326803 4.5e-07 95_[+9]_95 chrIV-NC_003075:6906145- 7.3e-07 95_[+9]_95 chrI-NC_003070:26164321- 7.3e-07 147_[+9]_43 chrII-NC_003071:12108197 7.3e-07 95_[+9]_95 chrIV-NC_003075:16256073 1.2e-06 81_[+9]_109 chrI-NC_003070:23126552- 2.5e-06 126_[+9]_64 chrII-NC_003071:7935107- 2.5e-06 120_[+9]_70 chrV-NC_003076:1212725-1 4.2e-06 64_[+9]_126 chrV-NC_003076:25086812- 6.3e-06 66_[+9]_124 chrI-NC_003070:7340458-7 6.3e-06 95_[+9]_95 chrIII-NC_003074:1138696 6.3e-06 74_[+9]_116 chrV-NC_003076:4460424-4 8.9e-06 80_[+9]_110 chrI-NC_003070:28804880- 1e-05 95_[+9]_95 chrIII-NC_003074:1773973 1e-05 150_[+9]_40 chrII-NC_003071:8813586- 1.2e-05 168_[+9]_22 chrII-NC_003071:560631-5 1.2e-05 180_[+9]_10 chrI-NC_003070:30371959- 1.3e-05 42_[+9]_148 chrI-NC_003070:6311195-6 1.4e-05 171_[+9]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=10 seqs=20 chrV-NC_003076:973984-97 ( 96) CCACGTCATC 1 chrI-NC_003070:4082490-4 ( 176) CCACGTCATC 1 chrII-NC_003071:12326803 ( 96) CCACGTCATC 1 chrIV-NC_003075:6906145- ( 96) CCACGTCAGC 1 chrI-NC_003070:26164321- ( 148) CCACGTCAGC 1 chrII-NC_003071:12108197 ( 96) CCACGTCAGC 1 chrIV-NC_003075:16256073 ( 82) CGACGTCATC 1 chrI-NC_003070:23126552- ( 127) CCACGTCATT 1 chrII-NC_003071:7935107- ( 121) CCACGTCATT 1 chrV-NC_003076:1212725-1 ( 65) CGACGTCACC 1 chrV-NC_003076:25086812- ( 67) CCACGTAATC 1 chrI-NC_003070:7340458-7 ( 96) CCACGTAATC 1 chrIII-NC_003074:1138696 ( 75) CGACGTCATT 1 chrV-NC_003076:4460424-4 ( 81) GCACGTCAGC 1 chrI-NC_003070:28804880- ( 96) CCACGTCATA 1 chrIII-NC_003074:1773973 ( 151) TGACGTCATC 1 chrII-NC_003071:8813586- ( 169) CGACGTCATG 1 chrII-NC_003071:560631-5 ( 181) CGACGTCGGC 1 chrI-NC_003070:30371959- ( 43) CCATGTCATC 1 chrI-NC_003070:6311195-6 ( 172) TGACGTCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 11.8904 E= 7.3e-001 -1097 215 -194 -163 -1097 176 86 -1097 170 -1097 -1097 -1097 -1097 231 -1097 -262 -1097 -1097 238 -1097 -1097 -1097 -1097 169 -162 223 -1097 -1097 163 -1097 -194 -1097 -1097 -194 64 107 -261 197 -194 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 7.3e-001 0.000000 0.850000 0.050000 0.100000 0.000000 0.650000 0.350000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.900000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 0.050000 0.300000 0.650000 0.050000 0.750000 0.050000 0.150000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- C[CG]ACGTCA[TG]C -------------------------------------------------------------------------------- Time 544.98 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 10 sites = 4 llr = 60 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :::a:::::: pos.-specific C a:a:aa:::a probability G ::::::aa:: matrix T :a::::::a: bits 2.4 * * **** * 2.1 * * **** * 1.9 * * **** * 1.7 ********** Relative 1.4 ********** Entropy 1.2 ********** (21.8 bits) 1.0 ********** 0.7 ********** 0.5 ********** 0.2 ********** 0.0 ---------- Multilevel CTCACCGGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chrV-NC_003076:8344069-8 50 2.82e-07 CATTTAACAT CTCACCGGTC TGGTTCGGTC chrI-NC_003070:28467619- 183 2.82e-07 ATACACTCCA CTCACCGGTC TGTCACCA chrI-NC_003070:16467893- 145 2.82e-07 ACGTTCGATG CTCACCGGTC GCGTCTTTAT chrII-NC_003071:18786456 9 2.82e-07 ATCTATCC CTCACCGGTC TTCCGCTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV-NC_003076:8344069-8 2.8e-07 49_[+10]_141 chrI-NC_003070:28467619- 2.8e-07 182_[+10]_8 chrI-NC_003070:16467893- 2.8e-07 144_[+10]_46 chrII-NC_003071:18786456 2.8e-07 8_[+10]_182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=10 seqs=4 chrV-NC_003076:8344069-8 ( 50) CTCACCGGTC 1 chrI-NC_003070:28467619- ( 183) CTCACCGGTC 1 chrI-NC_003070:16467893- ( 145) CTCACCGGTC 1 chrII-NC_003071:18786456 ( 9) CTCACCGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 63794 bayes= 13.961 E= 3.4e+003 -865 238 -865 -865 -865 -865 -865 169 -865 238 -865 -865 170 -865 -865 -865 -865 238 -865 -865 -865 238 -865 -865 -865 -865 238 -865 -865 -865 238 -865 -865 -865 -865 169 -865 238 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 4 E= 3.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- CTCACCGGTC -------------------------------------------------------------------------------- Time 602.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII-NC_003074:5216276 1.44e-03 129_[+3(1.30e-05)]_10_[+8(3.04e-06)]_41 chrIII-NC_003074:2285939 5.91e-02 97_[+1(1.86e-05)]_93 chrIII-NC_003074:4732955 5.80e-02 200 chrIII-NC_003074:2056022 5.84e-04 17_[+2(2.08e-05)]_138_[+2(4.78e-06)]_25 chrIII-NC_003074:1927636 6.41e-04 37_[+2(2.08e-05)]_2_[+4(4.02e-05)]_143 chrIII-NC_003074:2348858 2.78e-01 200 chrIII-NC_003074:2047653 1.96e-01 97_[+1(2.98e-05)]_93 chrIII-NC_003074:1395996 1.38e-01 13_[+4(4.02e-05)]_179 chrIII-NC_003074:1976038 4.39e-04 18_[+2(3.02e-05)]_34_[+6(1.53e-05)]_128 chrIII-NC_003074:2167873 3.64e-01 200 chrIII-NC_003074:2016186 1.42e-04 128_[+7(2.32e-06)]_63 chrIII-NC_003074:7503344 3.85e-03 68_[+1(2.74e-05)]_122 chrIII-NC_003074:4340381 7.04e-02 66_[+2(2.08e-05)]_124 chrIII-NC_003074:2144865 3.44e-03 112_[+5(2.97e-06)]_80 chrIII-NC_003074:9373252 3.64e-03 200 chrIII-NC_003074:2196946 3.84e-06 6_[+3(5.39e-05)]_1_[+8(7.79e-05)]_11_[+2(5.85e-05)]_49_[+1(2.98e-05)]_93 chrIII-NC_003074:4732789 4.22e-01 200 chrIII-NC_003074:338008- 5.52e-01 200 chrIII-NC_003074:8213415 1.21e-01 97_[+1(5.77e-05)]_93 chrIII-NC_003074:9170046 4.73e-01 200 chrIII-NC_003074:2047827 6.72e-01 200 chrIII-NC_003074:4829131 1.10e-01 86_[+6(7.61e-06)]_104 chrIII-NC_003074:1138696 4.27e-04 74_[+9(6.28e-06)]_58_[+6(1.53e-05)]_48 chrIII-NC_003074:2025163 4.69e-04 10_[+3(5.39e-05)]_77_[+1(2.98e-05)]_5_[+4(4.02e-05)]_80 chrIII-NC_003074:6019703 5.50e-01 200 chrIII-NC_003074:1983705 4.55e-04 79_[+6(7.61e-06)]_8_[+8(9.84e-06)]_93 chrIII-NC_003074:1876334 1.98e-01 107_[+3(3.10e-05)]_83 chrIII-NC_003074:4359967 1.61e-01 170_[+8(1.59e-05)]_20 chrIII-NC_003074:5216309 1.97e-03 96_[+3(1.30e-05)]_10_[+8(3.04e-06)]_63_[+3(1.68e-05)]_1 chrIII-NC_003074:1016321 2.76e-02 43_[+8(3.04e-06)]_147 chrIII-NC_003074:1846867 1.05e-01 79_[+8(4.16e-05)]_111 chrIII-NC_003074:2012113 1.31e-04 42_[+2(1.14e-06)]_38_[+6(7.61e-06)]_56_[+8(6.05e-05)]_34 chrIII-NC_003074:2011442 1.38e-03 97_[+5(7.72e-06)]_46_[+6(7.71e-05)]_39 chrIII-NC_003074:1630167 2.21e-03 75_[+2(6.84e-05)]_14_[+3(5.39e-05)]_91 chrIII-NC_003074:8943976 6.35e-03 93_[+2(1.43e-05)]_97 chrIII-NC_003074:877449- 1.89e-02 94_[+1(9.16e-05)]_96 chrIII-NC_003074:1773973 2.31e-03 [+2(3.02e-05)]_140_[+9(1.04e-05)]_40 chrIII-NC_003074:4358519 7.83e-04 26_[+8(1.59e-05)]_164 chrIII-NC_003074:2115360 1.53e-02 90_[+8(6.07e-06)]_27_[+6(7.71e-05)]_31_[+3(9.29e-05)]_22 chrIII-NC_003074:1885525 1.10e-02 32_[+6(6.48e-05)]_52_[+1(4.26e-05)]_96 chrIII-NC_003074:5920240 4.46e-01 200 chrIII-NC_003074:4572319 5.28e-01 200 chrIII-NC_003074:665060- 4.47e-04 37_[+6(7.61e-06)]_3_[+7(2.32e-06)]_13_[+3(6.85e-05)]_118 chrIII-NC_003074:5470385 6.67e-07 58_[+2(1.43e-05)]_12_[+8(6.07e-06)]_7_[+1(5.91e-06)]_17_[+7(6.02e-06)]_67 chrIII-NC_003074:1962057 1.20e-03 94_[+1(6.29e-05)]_80_[+7(7.20e-05)]_7 chrIII-NC_003074:1009490 5.90e-02 21_[+8(1.29e-05)]_12_[+3(4.45e-05)]_147 chrIII-NC_003074:2037905 3.29e-01 163_[+6(6.48e-05)]_27 chrIII-NC_003074:4606158 4.16e-03 88_[+6(7.61e-06)]_10_[+6(7.61e-06)]_7_[+4(5.72e-05)]_67 chrIII-NC_003074:1722372 3.74e-03 118_[+3(3.10e-05)]_38_[+8(1.29e-05)]_24 chrIII-NC_003074:1175197 1.97e-03 94_[+1(1.17e-05)]_59_[+4(4.75e-06)]_29 chrIII-NC_003074:8943216 2.56e-05 57_[+1(4.26e-05)]_53_[+2(3.02e-05)]_28_[+4(8.47e-05)]_19_[+5(1.73e-05)]_7 chrIII-NC_003074:9717966 2.97e-03 94_[+1(5.91e-06)]_36_[+4(8.47e-05)]_52 chrIII-NC_003074:611194- 5.69e-01 123_[+3(8.18e-05)]_67 chrIII-NC_003074:1245385 3.38e-02 94_[+1(7.74e-05)]_62_[+4(5.72e-05)]_26 chrIII-NC_003074:5236747 2.12e-03 78_[+3(8.18e-05)]_[+6(2.29e-05)]_102 chrIII-NC_003074:2214119 1.46e-03 9_[+3(9.90e-06)]_47_[+6(7.61e-06)]_124 chrIII-NC_003074:3885203 4.59e-02 200 chrIII-NC_003074:2098810 8.53e-02 31_[+2(4.61e-05)]_10_[+9(7.80e-05)]_139 chrIII-NC_003074:1945323 2.52e-01 104_[+8(4.16e-05)]_86 chrIII-NC_003074:1675554 1.62e-02 97_[+1(2.65e-06)]_93 chrIII-NC_003074:3003367 2.65e-02 62_[+6(2.77e-05)]_128 chrIII-NC_003074:2098821 2.36e-04 78_[+3(2.53e-05)]_10_[+5(2.97e-06)]_94 chrIII-NC_003074:822690- 1.38e-02 18_[+4(8.47e-05)]_57_[+8(6.05e-05)]_107 chrIII-NC_003074:5236683 1.52e-03 142_[+3(8.18e-05)]_[+6(2.29e-05)]_38 chrII-NC_003071:7934198- 1.65e-02 67_[+3(3.06e-06)]_110_[+9(9.17e-05)]_3 chrII-NC_003071:13036732 1.16e-02 109_[+3(1.30e-05)]_81 chrII-NC_003071:7935107- 5.02e-05 97_[+1(1.19e-06)]_13_[+9(2.47e-06)]_70 chrII-NC_003071:18882618 1.43e-02 97_[+1(5.91e-06)]_93 chrII-NC_003071:17508903 1.54e-03 28_[+2(3.02e-05)]_20_[+4(8.47e-05)]_99_[+3(9.29e-05)]_25 chrII-NC_003071:19114215 1.24e-04 97_[+1(1.12e-05)]_31_[+3(1.30e-05)]_52 chrII-NC_003071:17189231 2.52e-03 63_[+1(8.31e-05)]_21_[+1(5.91e-06)]_96 chrII-NC_003071:560631-5 1.10e-03 94_[+1(4.30e-06)]_76_[+9(1.17e-05)]_10 chrII-NC_003071:12849576 1.79e-02 18_[+8(1.29e-05)]_172 chrII-NC_003071:19100983 2.69e-02 110_[+2(1.14e-06)]_40_[+4(4.02e-05)]_32 chrII-NC_003071:12326803 4.75e-03 95_[+9(4.51e-07)]_95 chrII-NC_003071:12108197 2.48e-05 72_[+1(4.30e-06)]_13_[+9(7.31e-07)]_95 chrII-NC_003071:8760319- 3.93e-05 6_[+2(7.81e-05)]_41_[+5(1.25e-05)]_64_[+3(9.90e-06)]_61 chrII-NC_003071:18095440 8.60e-03 106_[+8(1.29e-05)]_18_[+6(1.53e-05)]_56 chrII-NC_003071:12173602 6.77e-02 97_[+1(8.84e-06)]_93 chrII-NC_003071:16111201 1.15e-01 78_[+3(3.10e-05)]_112 chrII-NC_003071:14331269 4.09e-01 200 chrII-NC_003071:12321522 6.29e-02 64_[+2(4.78e-06)]_126 chrII-NC_003071:18188065 3.20e-02 98_[+3(6.85e-05)]_92 chrII-NC_003071:19227465 2.66e-03 102_[+1(7.74e-05)]_61_[+5(3.25e-05)]_19 chrII-NC_003071:11689161 1.14e-02 200 chrII-NC_003071:19491297 1.46e-02 45_[+7(2.32e-06)]_146 chrII-NC_003071:10628311 8.28e-02 200 chrII-NC_003071:18786456 6.10e-05 8_[+10(2.82e-07)]_103_[+10(7.06e-05)]_69 chrII-NC_003071:8813586- 7.97e-04 67_[+8(3.04e-06)]_12_[+3(1.30e-05)]_69_[+9(1.17e-05)]_22 chrII-NC_003071:14851801 1.23e-01 90_[+5(3.25e-05)]_102 chrII-NC_003071:15099380 2.84e-04 94_[+1(1.17e-05)]_96 chrII-NC_003071:11941166 8.22e-02 27_[+6(4.77e-05)]_106_[+4(8.47e-05)]_49 chrII-NC_003071:9770577- 5.67e-02 53_[+6(2.29e-05)]_137 chrII-NC_003071:6920409- 4.53e-02 200 chrII-NC_003071:14450955 6.04e-04 94_[+1(7.09e-05)]_96 chrII-NC_003071:9770677- 2.57e-01 200 chrII-NC_003071:641561-6 9.19e-03 1_[+6(2.77e-05)]_189 chrII-NC_003071:12946397 8.21e-03 57_[+2(6.84e-05)]_51_[+2(2.08e-05)]_1_[+2(4.78e-06)]_53_[+4(8.47e-05)] chrII-NC_003071:17819771 3.70e-04 46_[+2(2.77e-05)]_23_[+2(3.02e-05)]_40_[+3(2.53e-05)]_61 chrII-NC_003071:17975979 1.39e-04 22_[+1(8.84e-06)]_119_[+4(5.72e-05)]_28_[+2(5.85e-05)]_3 chrII-NC_003071:18749207 2.06e-01 200 chrII-NC_003071:12941156 9.58e-02 200 chrII-NC_003071:19015799 3.98e-06 46_[+3(9.90e-06)]_17_[+6(1.53e-05)]_13_[+7(2.32e-06)]_95 chrII-NC_003071:16505491 1.40e-01 31_[+4(8.47e-05)]_161 chrII-NC_003071:8544091- 9.26e-04 64_[+2(5.85e-05)]_3_[+1(8.84e-06)]_10_[+1(8.84e-06)]_16_[+1(5.91e-06)]_67 chrII-NC_003071:18811073 4.29e-01 200 chrII-NC_003071:12185823 6.32e-02 200 chrII-NC_003071:14489582 3.85e-02 69_[+9(7.48e-05)]_32_[+8(2.57e-05)]_79 chrII-NC_003071:11771575 8.54e-02 132_[+6(2.29e-05)]_58 chrII-NC_003071:9580055- 3.13e-02 106_[+8(7.96e-06)]_17_[+3(4.45e-05)]_8_[+3(6.85e-05)]_39 chrII-NC_003071:14193902 3.21e-06 73_[+3(2.53e-05)]_30_[+5(1.25e-05)]_9_[+7(7.20e-05)]_61 chrII-NC_003071:17796012 2.71e-02 97_[+1(2.98e-05)]_93 chrII-NC_003071:13036795 6.41e-02 46_[+3(1.30e-05)]_144 chrII-NC_003071:18423231 2.02e-04 94_[+1(4.26e-05)]_21_[+2(2.77e-05)]_65 chrI-NC_003070:8166392-8 2.70e-04 7_[+6(4.77e-05)]_80_[+1(5.91e-06)]_9_[+2(3.02e-05)]_74 chrI-NC_003070:364212-36 2.69e-06 97_[+1(2.02e-05)]_43_[+5(7.72e-06)]_13_[+2(3.02e-05)]_19 chrI-NC_003070:22343054- 2.92e-02 171_[+3(8.18e-05)]_19 chrI-NC_003070:17253659- 2.28e-02 113_[+1(5.91e-06)]_77 chrI-NC_003070:16467893- 2.07e-04 94_[+1(4.57e-07)]_40_[+10(2.82e-07)]_46 chrI-NC_003070:30371959- 1.28e-02 42_[+9(1.29e-05)]_42_[+1(5.01e-05)]_96 chrI-NC_003070:72146-723 2.62e-02 48_[+4(8.47e-05)]_65_[+8(6.07e-06)]_69 chrI-NC_003070:7340458-7 3.35e-02 95_[+9(6.28e-06)]_95 chrI-NC_003070:6867963-6 3.01e-02 50_[+7(7.20e-05)]_76_[+1(5.77e-05)]_55 chrI-NC_003070:23126552- 2.18e-06 94_[+1(1.92e-06)]_22_[+9(2.47e-06)]_23_[+10(1.47e-05)]_31 chrI-NC_003070:23286838- 5.27e-04 37_[+5(7.72e-06)]_50_[+9(4.23e-05)]_52_[+1(6.29e-05)]_33 chrI-NC_003070:28953600- 4.66e-01 200 chrI-NC_003070:18321436- 1.95e-03 48_[+4(4.75e-06)]_61_[+7(2.70e-05)]_74 chrI-NC_003070:7930400-7 1.10e-03 76_[+8(3.04e-06)]_21_[+2(3.02e-05)]_83 chrI-NC_003070:7142415-7 5.02e-01 200 chrI-NC_003070:19070051- 1.50e-01 116_[+6(2.29e-05)]_74 chrI-NC_003070:26164321- 1.10e-03 97_[+1(1.86e-05)]_40_[+9(7.31e-07)]_21_[+4(8.47e-05)]_14 chrI-NC_003070:5137983-5 1.07e-01 2_[+3(5.39e-05)]_188 chrI-NC_003070:24331613- 4.47e-03 126_[+3(6.85e-05)]_34_[+6(7.61e-06)]_4_[+3(1.30e-05)]_6 chrI-NC_003070:6174484-6 1.51e-03 74_[+1(8.84e-06)]_10_[+1(3.43e-05)]_1_[+8(9.49e-05)]_85 chrI-NC_003070:24732448- 6.00e-05 29_[+6(9.43e-05)]_50_[+8(3.04e-06)]_101 chrI-NC_003070:28954498- 7.65e-01 200 chrI-NC_003070:23412259- 1.74e-02 132_[+6(4.77e-05)]_58 chrI-NC_003070:26043093- 8.54e-03 41_[+2(3.02e-05)]_76_[+4(8.47e-05)]_65 chrI-NC_003070:5968015-5 1.30e-02 10_[+2(8.88e-05)]_163_[+8(4.35e-05)]_7 chrI-NC_003070:28955713- 4.08e-02 162_[+3(4.45e-05)]_28 chrI-NC_003070:24760580- 6.09e-03 4_[+3(6.85e-05)]_45_[+6(8.19e-05)]_131 chrI-NC_003070:27294385- 3.90e-06 9_[+2(2.08e-05)]_21_[+1(2.37e-05)]_56_[+8(9.84e-06)]_9_[+3(1.68e-05)]_65 chrI-NC_003070:25335093- 1.20e-02 94_[+1(1.50e-05)]_70_[+8(2.57e-05)]_16 chrI-NC_003070:29121010- 3.95e-02 80_[+6(7.61e-06)]_110 chrI-NC_003070:10860458- 1.76e-02 97_[+1(1.19e-06)]_93 chrI-NC_003070:5018083-5 7.45e-02 66_[+8(3.55e-05)]_124 chrI-NC_003070:1143820-1 1.39e-03 38_[+8(4.16e-05)]_26_[+7(2.32e-06)]_117 chrI-NC_003070:10353875- 5.28e-02 200 chrI-NC_003070:18627576- 4.42e-03 97_[+1(8.84e-06)]_93 chrI-NC_003070:29406817- 1.55e-02 56_[+6(7.61e-06)]_22_[+6(7.61e-06)]_102 chrI-NC_003070:29399321- 3.86e-02 97_[+8(4.16e-05)]_93 chrI-NC_003070:5070745-5 7.34e-03 200 chrI-NC_003070:25743975- 2.30e-02 200 chrI-NC_003070:18942515- 7.12e-05 94_[+1(1.92e-06)]_67_[+4(4.02e-05)]_21 chrI-NC_003070:3108015-3 8.38e-03 65_[+6(7.61e-06)]_125 chrI-NC_003070:6746757-6 1.26e-01 143_[+3(8.18e-05)]_47 chrI-NC_003070:20876436- 1.73e-04 1_[+7(2.32e-06)]_91_[+2(1.43e-05)]_89 chrI-NC_003070:4082490-4 2.72e-04 92_[+6(7.71e-05)]_73_[+9(4.51e-07)]_15 chrI-NC_003070:11454805- 9.06e-01 200 chrI-NC_003070:2214934-2 3.28e-01 200 chrI-NC_003070:30267504- 2.28e-02 200 chrI-NC_003070:28804880- 2.02e-05 95_[+9(1.04e-05)]_37_[+2(9.59e-05)]_11_[+5(7.72e-06)]_29 chrI-NC_003070:22877423- 5.89e-03 94_[+1(4.30e-06)]_96 chrI-NC_003070:26038263- 2.88e-01 200 chrI-NC_003070:1880787-1 1.75e-01 1_[+4(5.72e-05)]_78_[+10(7.06e-05)]_103 chrI-NC_003070:4548671-4 1.02e-02 30_[+5(7.72e-06)]_52_[+8(2.57e-05)]_100 chrI-NC_003070:6899616-6 8.54e-04 94_[+1(4.57e-07)]_96 chrI-NC_003070:8598740-8 2.63e-03 133_[+6(7.61e-06)]_57 chrI-NC_003070:11472862- 9.87e-03 87_[+3(4.45e-05)]_11_[+3(1.30e-05)]_31_[+8(2.57e-05)]_12_[+3(3.10e-05)]_19 chrI-NC_003070:28467619- 1.70e-04 34_[+8(3.55e-05)]_138_[+10(2.82e-07)]_8 chrI-NC_003070:6311195-6 1.24e-01 171_[+9(1.38e-05)]_19 chrI-NC_003070:23734604- 4.07e-04 62_[+5(2.97e-06)]_19_[+3(1.30e-05)]_24_[+8(6.91e-05)]_67 chrI-NC_003070:30249255- 1.33e-01 94_[+1(1.17e-05)]_96 chrI-NC_003070:1773727-1 1.23e-02 97_[+1(8.84e-06)]_37_[+4(2.30e-05)]_48 chrI-NC_003070:23238411- 7.13e-03 114_[+3(9.90e-06)]_76 chrI-NC_003070:8563015-8 3.87e-02 200 chrI-NC_003070:20084599- 3.85e-01 200 chrI-NC_003070:6560769-6 3.50e-03 161_[+7(2.32e-06)]_10_[+4(4.75e-06)]_12 chrI-NC_003070:25877584- 1.01e-01 200 chrI-NC_003070:16713584- 5.45e-02 83_[+6(7.61e-06)]_12_[+6(7.61e-06)]_85 chrI-NC_003070:12228596- 1.18e-01 45_[+2(3.02e-05)]_145 chrI-NC_003070:21517777- 1.90e-03 47_[+7(7.20e-05)]_22_[+6(9.43e-05)]_37_[+3(1.30e-05)]_65 chrI-NC_003070:7930555-7 1.91e-04 54_[+8(2.57e-05)]_33_[+1(5.91e-06)]_93 chrI-NC_003070:21043046- 4.43e-05 76_[+2(7.68e-06)]_47_[+1(8.84e-06)]_57 chrI-NC_003070:16713723- 3.93e-02 200 chrI-NC_003070:25736387- 1.76e-03 13_[+4(8.47e-05)]_10_[+4(5.72e-05)]_59_[+6(7.61e-06)]_92 chrI-NC_003070:22512251- 6.04e-03 [+3(6.85e-05)]_95_[+4(4.02e-05)]_87 chrI-NC_003070:8596542-8 5.29e-06 34_[+5(2.97e-06)]_55_[+1(1.19e-06)]_70_[+3(9.90e-06)]_13 chrI-NC_003070:4132322-4 2.67e-04 73_[+4(4.02e-05)]_13_[+1(2.02e-05)]_22_[+3(9.29e-05)]_64 chrI-NC_003070:26097575- 3.68e-03 72_[+3(9.90e-06)]_118 chrI-NC_003070:1953904-1 8.74e-02 200 chrI-NC_003070:6174672-6 1.15e-04 97_[+1(1.19e-06)]_36_[+3(4.45e-05)]_20_[+8(7.48e-05)]_17 chrI-NC_003070:9763126-9 1.82e-02 98_[+4(2.30e-05)]_94 chrI-NC_003070:21133615- 4.77e-02 97_[+1(3.43e-05)]_49_[+5(2.49e-05)]_36 chrI-NC_003070:7270500-7 3.35e-03 7_[+1(4.26e-05)]_41_[+1(8.31e-05)]_132 chrI-NC_003070:1143756-1 7.09e-04 102_[+8(4.16e-05)]_26_[+7(2.32e-06)]_53 chrI-NC_003070:25320229- 5.56e-02 96_[+3(1.30e-05)]_21_[+8(9.49e-05)]_63 chrI-NC_003070:28292956- 1.73e-03 6_[+8(2.57e-05)]_158_[+4(8.47e-05)]_18 chrI-NC_003070:26164485- 5.71e-03 14_[+4(8.47e-05)]_75_[+1(5.91e-06)]_93 chrI-NC_003070:28143859- 6.35e-04 94_[+1(7.74e-05)]_64_[+1(4.57e-07)]_22 chrI-NC_003070:28315795- 2.33e-06 4_[+2(2.08e-05)]_80_[+1(1.50e-05)]_24_[+3(5.39e-05)]_62 chrI-NC_003070:7065346-7 3.56e-01 200 chrI-NC_003070:10014137- 8.48e-01 200 chrI-NC_003070:3664090-3 1.15e-01 161_[+7(7.20e-05)]_30 chrI-NC_003070:28954838- 2.73e-01 200 chrI-NC_003070:1953781-1 1.03e-02 39_[+4(2.30e-05)]_47_[+1(2.74e-05)]_96 chrIV-NC_003075:13685900 2.28e-04 87_[+4(5.72e-05)]_2_[+1(1.19e-06)]_56_[+1(2.37e-05)]_27 chrIV-NC_003075:11604485 2.74e-01 200 chrIV-NC_003075:13017928 3.54e-03 46_[+2(7.68e-06)]_144 chrIV-NC_003075:12379981 7.73e-02 91_[+6(2.29e-05)]_99 chrIV-NC_003075:33765-33 1.00e-01 200 chrIV-NC_003075:17535190 9.91e-03 97_[+1(3.43e-05)]_93 chrIV-NC_003075:14141422 6.75e-02 200 chrIV-NC_003075:13475395 1.01e-01 200 chrIV-NC_003075:13023435 4.68e-03 118_[+2(6.84e-05)]_38_[+6(7.61e-06)]_24 chrIV-NC_003075:14863096 3.81e-02 200 chrIV-NC_003075:17395740 1.51e-03 73_[+6(7.61e-06)]_117 chrIV-NC_003075:6752985- 2.42e-03 97_[+1(2.74e-05)]_[+1(8.31e-05)]_83 chrIV-NC_003075:14118209 8.56e-03 97_[+1(8.84e-06)]_93 chrIV-NC_003075:18318587 5.92e-03 157_[+3(5.39e-05)]_4_[+2(6.84e-05)]_19 chrIV-NC_003075:11425880 7.52e-02 200 chrIV-NC_003075:272143-2 1.75e-02 3_[+2(3.02e-05)]_187 chrIV-NC_003075:14266719 3.39e-02 128_[+4(4.02e-05)]_1_[+3(8.18e-05)]_53 chrIV-NC_003075:17397611 1.11e-01 5_[+2(7.81e-05)]_185 chrIV-NC_003075:16613081 2.10e-01 48_[+6(4.77e-05)]_142 chrIV-NC_003075:16256073 1.62e-04 81_[+9(1.18e-06)]_48_[+1(6.65e-06)]_51 chrIV-NC_003075:17319773 1.73e-02 200 chrIV-NC_003075:16656874 7.73e-02 94_[+1(6.29e-05)]_12_[+1(3.43e-05)]_74 chrIV-NC_003075:8100451- 6.83e-03 12_[+4(8.47e-05)]_107_[+2(1.43e-05)]_63 chrIV-NC_003075:12769653 1.07e-02 34_[+3(6.85e-05)]_103_[+8(5.55e-05)]_43 chrIV-NC_003075:2661596- 3.29e-02 200 chrIV-NC_003075:8203258- 2.12e-02 45_[+4(4.02e-05)]_35_[+3(9.90e-06)]_102 chrIV-NC_003075:13854216 1.69e-04 75_[+3(4.45e-05)]_32_[+2(1.43e-05)]_73 chrIV-NC_003075:16860561 2.08e-01 54_[+6(6.00e-05)]_22_[+6(2.29e-05)]_16_[+2(6.84e-05)]_78 chrIV-NC_003075:17048860 2.79e-04 155_[+3(9.90e-06)]_35 chrIV-NC_003075:18472024 1.49e-03 124_[+6(2.29e-05)]_24_[+1(1.12e-05)]_32 chrIV-NC_003075:7349242- 3.98e-02 95_[+2(4.61e-05)]_63_[+2(7.81e-05)]_22 chrIV-NC_003075:1494888- 3.56e-02 98_[+6(6.00e-05)]_41_[+2(8.88e-05)]_41 chrIV-NC_003075:10600009 6.44e-04 9_[+6(5.24e-05)]_66_[+4(8.47e-05)]_107 chrIV-NC_003075:13023617 5.34e-02 121_[+3(4.45e-05)]_69 chrIV-NC_003075:11971410 2.30e-02 200 chrIV-NC_003075:6771834- 3.89e-02 115_[+6(1.53e-05)]_75 chrIV-NC_003075:17736542 3.21e-01 157_[+3(5.39e-05)]_33 chrIV-NC_003075:17798664 2.79e-03 179_[+7(2.32e-06)]_12 chrIV-NC_003075:15948601 4.70e-01 200 chrIV-NC_003075:6906145- 4.79e-02 95_[+9(7.31e-07)]_95 chrIV-NC_003075:17409244 2.33e-03 87_[+8(3.55e-05)]_75_[+4(8.47e-05)]_20 chrIV-NC_003075:6771910- 8.30e-02 39_[+6(1.53e-05)]_151 chrIV-NC_003075:12051681 2.05e-01 81_[+2(3.02e-05)]_109 chrIV-NC_003075:14331411 5.59e-06 24_[+5(4.21e-05)]_23_[+4(4.02e-05)]_97_[+10(1.47e-05)]_30 chrIV-NC_003075:13016235 2.94e-02 94_[+1(4.30e-06)]_96 chrIV-NC_003075:15231300 1.67e-02 59_[+1(8.31e-05)]_25_[+1(1.50e-05)]_49_[+1(8.31e-05)]_37 chrIV-NC_003075:17334368 4.58e-05 94_[+1(8.84e-06)]_75_[+3(9.90e-06)]_11 chrIV-NC_003075:9443322- 2.90e-02 97_[+1(7.09e-05)]_93 chrIV-NC_003075:7369585- 1.57e-04 23_[+1(1.12e-05)]_32_[+1(8.84e-06)]_19_[+1(4.26e-05)]_14_[+4(5.72e-05)]_32_[+3(2.53e-05)]_2_[+8(6.24e-05)]_20 chrV-NC_003076:22649608- 2.15e-01 200 chrV-NC_003076:8344069-8 8.42e-03 49_[+10(2.82e-07)]_141 chrV-NC_003076:2303219-2 4.50e-01 200 chrV-NC_003076:16135188- 4.27e-01 94_[+1(5.77e-05)]_96 chrV-NC_003076:5529995-5 1.24e-01 117_[+6(7.71e-05)]_73 chrV-NC_003076:5177754-5 3.54e-02 31_[+3(1.68e-05)]_159 chrV-NC_003076:1375822-1 6.71e-04 34_[+1(4.57e-07)]_85_[+8(9.84e-06)]_61 chrV-NC_003076:26806403- 1.03e-02 97_[+1(5.01e-05)]_33_[+8(5.55e-05)]_50 chrV-NC_003076:24836685- 1.44e-05 94_[+1(5.91e-06)]_6_[+9(2.88e-05)]_80 chrV-NC_003076:18215713- 3.24e-02 20_[+2(3.25e-05)]_115_[+4(2.30e-05)]_47 chrV-NC_003076:7266265-7 2.73e-03 97_[+3(9.90e-06)]_93 chrV-NC_003076:588900-58 3.44e-01 200 chrV-NC_003076:3865585-3 2.01e-01 46_[+2(6.84e-05)]_58_[+2(3.02e-05)]_76 chrV-NC_003076:10459004- 6.26e-03 33_[+5(1.25e-05)]_159 chrV-NC_003076:7524647-7 7.84e-03 94_[+5(7.72e-06)]_98 chrV-NC_003076:2985446-2 8.98e-02 [+2(4.31e-05)]_87_[+1(3.88e-05)]_93 chrV-NC_003076:23762535- 1.24e-01 130_[+6(7.71e-05)]_60 chrV-NC_003076:25086812- 2.41e-03 66_[+9(6.28e-06)]_18_[+1(3.88e-05)]_96 chrV-NC_003076:7265855-7 4.98e-04 37_[+6(7.61e-06)]_6_[+3(3.06e-06)]_89_[+3(6.85e-05)]_38 chrV-NC_003076:8376625-8 8.09e-02 21_[+1(6.29e-05)]_53_[+8(3.55e-05)]_106 chrV-NC_003076:8359800-8 3.32e-02 94_[+1(5.91e-06)]_96 chrV-NC_003076:556014-55 9.64e-02 200 chrV-NC_003076:21723045- 6.25e-02 16_[+2(2.77e-05)]_174 chrV-NC_003076:23840693- 3.93e-01 200 chrV-NC_003076:24935013- 4.14e-02 49_[+2(2.08e-05)]_13_[+2(8.88e-05)]_118 chrV-NC_003076:20781642- 5.38e-01 200 chrV-NC_003076:7673076-7 2.52e-02 4_[+3(3.06e-06)]_186 chrV-NC_003076:23785171- 1.66e-02 117_[+2(4.61e-05)]_45_[+2(4.78e-06)]_18 chrV-NC_003076:24886947- 1.43e-01 [+4(5.72e-05)]_192 chrV-NC_003076:900190-90 5.67e-03 155_[+3(3.06e-06)]_21_[+3(5.39e-05)]_4 chrV-NC_003076:26807915- 2.53e-03 44_[+8(5.25e-05)]_20_[+3(1.30e-05)]_98_[+2(7.81e-05)]_8 chrV-NC_003076:16635429- 1.36e-01 82_[+1(6.29e-05)]_2_[+1(1.86e-05)]_96 chrV-NC_003076:25972709- 3.17e-02 200 chrV-NC_003076:9480398-9 1.99e-02 200 chrV-NC_003076:16451031- 5.44e-04 72_[+1(7.74e-05)]_41_[+4(2.30e-05)]_69 chrV-NC_003076:25900220- 2.72e-03 10_[+2(8.88e-05)]_180 chrV-NC_003076:24239588- 4.60e-04 81_[+6(7.61e-06)]_16_[+2(9.59e-05)]_3_[+4(5.72e-05)]_7_[+3(5.39e-05)]_55 chrV-NC_003076:23773879- 4.40e-02 97_[+1(8.31e-05)]_63_[+4(4.75e-06)]_22 chrV-NC_003076:20014837- 4.86e-02 140_[+8(6.07e-06)]_50 chrV-NC_003076:9133236-9 1.10e-03 97_[+1(2.65e-06)]_93 chrV-NC_003076:766920-76 9.70e-02 97_[+1(7.09e-05)]_46_[+1(9.16e-05)]_37 chrV-NC_003076:26786389- 1.08e-02 40_[+5(1.73e-05)]_19_[+5(7.72e-06)]_125 chrV-NC_003076:24953160- 3.88e-05 11_[+2(1.14e-06)]_[+2(3.02e-05)]_44_[+5(7.72e-06)]_3_[+2(1.14e-06)]_1_[+5(1.73e-05)]_95 chrV-NC_003076:14755579- 1.05e-01 54_[+6(9.43e-05)]_45_[+6(1.53e-05)]_81 chrV-NC_003076:7960250-7 2.38e-03 54_[+3(1.30e-05)]_41_[+5(1.73e-05)]_87 chrV-NC_003076:23391751- 1.34e-03 57_[+6(7.61e-06)]_133 chrV-NC_003076:6833045-6 1.67e-01 200 chrV-NC_003076:2027935-2 2.10e-01 200 chrV-NC_003076:10356668- 4.30e-04 16_[+3(6.85e-05)]_13_[+2(3.73e-05)]_151 chrV-NC_003076:1212725-1 1.56e-02 64_[+9(4.21e-06)]_23_[+1(7.09e-05)]_93 chrV-NC_003076:18358999- 3.16e-03 94_[+5(3.25e-05)]_19_[+8(8.47e-05)]_40_[+1(3.43e-05)]_19 chrV-NC_003076:4460424-4 6.12e-05 80_[+9(8.92e-06)]_7_[+1(5.77e-05)]_93 chrV-NC_003076:26155-263 1.07e-03 86_[+5(1.25e-05)]_3_[+1(6.29e-05)]_50_[+3(4.45e-05)]_33 chrV-NC_003076:21437588- 3.05e-02 63_[+8(3.04e-06)]_127 chrV-NC_003076:4734829-4 6.01e-02 94_[+5(7.72e-06)]_98 chrV-NC_003076:24240069- 4.83e-03 51_[+10(7.06e-05)]_139 chrV-NC_003076:8376552-8 1.99e-03 33_[+1(1.19e-06)]_51_[+1(6.29e-05)]_53_[+8(3.55e-05)]_33 chrV-NC_003076:9515557-9 1.36e-02 132_[+4(4.02e-05)]_5_[+3(6.85e-05)]_45 chrV-NC_003076:15460593- 1.52e-02 88_[+6(7.61e-06)]_102 chrV-NC_003076:75167-753 2.83e-01 200 chrV-NC_003076:16450886- 1.36e-01 116_[+8(6.07e-06)]_74 chrV-NC_003076:24239953- 5.18e-02 53_[+2(4.31e-05)]_104_[+10(7.06e-05)]_23 chrV-NC_003076:1855774-1 2.13e-01 200 chrV-NC_003076:5011856-5 1.34e-01 200 chrV-NC_003076:756609-75 2.80e-03 81_[+8(3.55e-05)]_99_[+2(2.77e-05)] chrV-NC_003076:26805534- 3.38e-01 102_[+3(5.39e-05)]_88 chrV-NC_003076:16440746- 8.20e-01 200 chrV-NC_003076:5205507-5 7.71e-02 94_[+1(8.84e-06)]_96 chrV-NC_003076:15997367- 6.19e-02 [+3(6.85e-05)]_121_[+6(6.00e-05)]_59 chrV-NC_003076:2561208-2 1.34e-02 56_[+6(1.53e-05)]_41_[+4(8.47e-05)]_85 chrV-NC_003076:9628962-9 8.80e-03 142_[+8(3.04e-06)]_48 chrV-NC_003076:448654-44 3.26e-02 29_[+8(6.91e-05)]_58_[+1(5.01e-05)]_93 chrV-NC_003076:5962181-5 1.20e-04 112_[+3(1.30e-05)]_30_[+2(8.34e-05)]_18_[+6(3.53e-05)]_10 chrV-NC_003076:7833316-7 6.73e-02 200 chrV-NC_003076:266618-26 1.25e-05 38_[+4(5.72e-05)]_13_[+8(4.16e-05)]_28_[+1(8.31e-05)]_67_[+2(7.68e-06)]_16 chrV-NC_003076:973984-97 1.75e-08 95_[+9(4.51e-07)]_47_[+8(6.07e-06)]_6_[+4(5.72e-05)]_24 chrV-NC_003076:3857021-3 1.10e-01 200 chrV-NC_003076:24476843- 1.67e-02 86_[+4(4.02e-05)]_3_[+1(5.77e-05)]_93 chrV-NC_003076:25158624- 1.97e-04 36_[+1(3.88e-05)]_51_[+1(1.19e-06)]_63_[+3(3.06e-06)]_20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************