MEME

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Discovered Motifs | Block diagrams of Motifs | Program information | Explanation

Discovered Motifs

Motif Overview

Motif 1	1.0e-073 121 sites
Motif 2	7.6e-025 115 sites
Motif 3	4.2e-044 155 sites
Motif 4	2.2e-022 124 sites
Motif 5	2.6e-002 22 sites
Motif 6	1.9e+001 53 sites
Motif 7	1.9e+001 10 sites
Motif 8	1.1e+003 40 sites
Motif 9	7.3e-001 20 sites
Motif 10	3.4e+003 4 sites

Further Analysis

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Motif 1

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Summary

Sequence Logo

E-value	1.0e-073
Width	10
Sites	121

PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Standard Reverse Complement

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Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[GT][ATC]CACGTG[TGA][CAT]

Further Analysis

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Data Formats

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PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:1375822-1376022	34	4.57e-07	CCAGTATTGA	GCCACGTGTC	TTCTGCCAAT
chrI-NC_003070:28143859-28144059	168	4.57e-07	AATACAATCC	GCCACGTGTC	CCATCTTCAC
chrI-NC_003070:6899616-6899816	94	4.57e-07	TACAATTTGT	GCCACGTGTC	CTATCCATAG
chrI-NC_003070:16467893-16468093	94	4.57e-07	ACCCGTCACT	GCCACGTGTC	ATCCGGATCT
chrV-NC_003076:25158624-25158824	97	1.19e-06	GGTTTTCATG	GACACGTGTC	AAGTTTCCAA
chrV-NC_003076:8376552-8376752	33	1.19e-06	TTTTCGTTTG	GACACGTGTC	CTGCTTTATC
chrIV-NC_003075:13685900-13686100	97	1.19e-06	TGGTCCAACT	GACACGTGTC	ATCACGGGGA
chrI-NC_003070:6174672-6174872	97	1.19e-06	GGTTGGTGAC	GACACGTGTC	CTCAATCATT
chrI-NC_003070:8596542-8596742	97	1.19e-06	AATGAGTTTG	GACACGTGTC	GACATCTCGA
chrI-NC_003070:10860458-10860658	97	1.19e-06	ACAATTTACT	GACACGTGTC	ATTTAGCTTC
chrII-NC_003071:7935107-7935307	97	1.19e-06	CTTACTTTGC	GACACGTGTC	ATGTTCCTTC
chrI-NC_003070:18942515-18942715	94	1.92e-06	CAATATCTTT	GTCACGTGTC	ACTCCCACAA
chrI-NC_003070:23126552-23126752	94	1.92e-06	GTGGCATACA	GTCACGTGTC	AGCGATCGGA
chrV-NC_003076:9133236-9133436	97	2.65e-06	ACCCCATTAC	GACACGTGAC	AGGCTGGGCA
chrIII-NC_003074:16755545-16755745	97	2.65e-06	GGAAATCACA	GACACGTGAC	GAGAAGAACG
chrIV-NC_003075:13016235-13016435	94	4.30e-06	CTCTGTGAAT	GCCACGTGGA	TAAGAAACAG
chrI-NC_003070:22877423-22877623	94	4.30e-06	TAGTAAGAAT	GCCACGTGGA	TTAATAAGCA
chrII-NC_003071:12108197-12108397	72	4.30e-06	TCACGATGAT	GCCACGTGTA	CTTCAAAATA
chrII-NC_003071:560631-560831	94	4.30e-06	ATCCACATGT	GCCACGTGGA	GCAGCGTGTC
chrV-NC_003076:8359800-8360000	94	5.91e-06	ATAGGAATAT	GACACGTGTA	TGGTTATTAT
chrV-NC_003076:24836685-24836885	94	5.91e-06	GTTAGTACGT	GACACGTGTA	AACCAGTGAC
chrI-NC_003070:26164485-26164685	97	5.91e-06	ATGATTATCC	GACACGTGGA	TTTAATATGA
chrI-NC_003070:7930555-7930755	97	5.91e-06	TTAGAGAAGG	GTCACGTGAC	GTTTGACCTG
chrI-NC_003070:17253659-17253859	113	5.91e-06	GTCTATTTTT	GACACGTGTA	ATGGCCATAA
chrI-NC_003070:8166392-8166592	97	5.91e-06	AGTAAAAAAA	GACACGTGTA	GATGCTATAA
chrII-NC_003071:17189231-17189431	94	5.91e-06	AAATATAGCT	GACACGTGTA	AACGTCGGTG
chrII-NC_003071:18882618-18882818	97	5.91e-06	CAGGGAGATA	GTCACGTGAC	TTGCCTGACC
chrIII-NC_003074:9717966-9718166	94	5.91e-06	TAGCACGACT	GACACGTGTA	TCCTACGAGG
chrIII-NC_003074:5470385-5470585	97	5.91e-06	ATTGGAGTTT	GTCACGTGAC	GGAATCTTAT
chrIV-NC_003075:16256073-16256273	139	6.65e-06	TTTAGTAGAA	GCCACGTGTT	GCGTTCGTGT
chrV-NC_003076:5205507-5205707	94	8.84e-06	CTTCGAATAA	TCCACGTGTC	ACCTTAAGAT
chrIV-NC_003075:7369585-7369785	65	8.84e-06	GCTCGTAGAC	GACACGTGTT	GAAGTGTAAT
chrIV-NC_003075:17334368-17334568	94	8.84e-06	GAAGTCAGCT	TCCACGTGTC	CTATTTATGT
chrIV-NC_003075:14118209-14118409	97	8.84e-06	ATATATTATC	GACACGTGTT	AATCTCTTAC
chrI-NC_003070:21043046-21043246	133	8.84e-06	CCGATGAAAA	TCCACGTGGC	ACTCCGATCT
chrI-NC_003070:1773727-1773927	97	8.84e-06	TGCAGCTGGG	GACACGTGGT	GGATAAGGAG
chrI-NC_003070:18627576-18627776	97	8.84e-06	CGTATAACAA	GACACGTGTT	GCAAGAGAAG
chrI-NC_003070:6174484-6174684	74	8.84e-06	GAAAATGCCA	TCCACGTGTC	AGCCTCGTTG
chrII-NC_003071:8544091-8544291	77	8.84e-06	AGGAAAAAGT	GACACGTGGT	AGGAGGTTAA
chrII-NC_003071:17975979-17976179	22	8.84e-06	TTCTGGCGTT	GACACGTGGT	GATTGCTGAT
chrII-NC_003071:12173602-12173802	97	8.84e-06	GACAGAATGA	GACACGTGGT	GGTTTTAATG
chrIV-NC_003075:18472024-18472224	158	1.12e-05	ATCTGGTCCA	TACACGTGGC	GTCGCTTTGT
chrII-NC_003071:19114215-19114415	97	1.12e-05	AGATATTAAT	TACACGTGGC	GACAAAAAAG
chrI-NC_003070:30249255-30249455	94	1.17e-05	AGCTGCATCT	CCCACGTGGC	TCTCTTTCAT
chrII-NC_003071:15099380-15099580	94	1.17e-05	ATAGCGAGGT	CCCACGTGTC	CCCCATAAGT
chrIII-NC_003074:1175197-1175397	94	1.17e-05	ATTTGATGCT	CCCACGTGGC	CCAATGTAAC
chrIV-NC_003075:15231300-15231500	94	1.50e-05	ACCCAACTTT	CACACGTGTC	GATTCCCTAT
chrI-NC_003070:28315795-28315995	94	1.50e-05	AATCCCATGT	ACCACGTGTC	TAGTTTTTTT
chrI-NC_003070:25335093-25335293	94	1.50e-05	GACTGACAAG	GTCACGTGGT	CTTTGACAGG
chrV-NC_003076:16635429-16635629	94	1.86e-05	CACGTGTTGT	AACACGTGTC	ATGACTCAGC
chrI-NC_003070:26164321-26164521	97	1.86e-05	AAGCTGTGTA	AACACGTGGC	ACATGACCCA
chrIII-NC_003074:22859396-22859596	97	1.86e-05	TCACTAAATC	GACACGTGAA	CCGACAGAAA
chrI-NC_003070:4132322-4132522	94	2.02e-05	CAATATACTC	GGCACGTGCC	TCTTTCCTCT
chrI-NC_003070:364212-364412	97	2.02e-05	TCCCTGTGCT	GCCACGTGAT	CACCATCCGA
chrI-NC_003070:27294385-27294585	40	2.37e-05	AAAATGGGGA	GGCACGTGGA	GTGAGCATGA
chrIV-NC_003075:6752985-6753185	97	2.74e-05	GGCCCATTTC	ATCACGTGGC	CTCACGTGTT
chrI-NC_003070:1953781-1953981	94	2.74e-05	CTTTCTCCAT	ATCACGTGTC	CGATCCTCCA
chrIII-NC_003074:7503344-7503544	68	2.74e-05	ATTACGAAGA	GCCACGTGCT	TATGGAGAAC
chrII-NC_003071:17796012-17796212	97	2.98e-05	TTATGTGATA	GTGACGTGGC	AATAAACCAT
chrIII-NC_003074:20251636-20251836	97	2.98e-05	ATCGGTTTGA	GTGACGTGGC	AAATATGGGC
chrIII-NC_003074:21969467-21969667	97	2.98e-05	TCTCGGTAGT	GACACGTGCT	ATAATGCCCA
chrIII-NC_003074:20476530-20476730	97	2.98e-05	AACCATCTGA	GTGACGTGGC	GCAAATGGAC
chrV-NC_003076:18358999-18359199	171	3.43e-05	ACCTGTGACT	GTCACGTGCA	TGCGTCTAAA
chrIV-NC_003075:16656874-16657074	116	3.43e-05	CCACCATCAA	ACCACGTGAC	TGACCCAAAC
chrIV-NC_003075:17535190-17535390	97	3.43e-05	CGTCTTTACC	GTCACGTGAT	AGATCGTTTC
chrI-NC_003070:21133615-21133815	97	3.43e-05	ATAATGAGAG	TACACGTGCC	ATCGATGAAC
chrV-NC_003076:25086812-25087012	94	3.88e-05	TGGGAGAATG	TACACGTGTA	CGGTAGAGAT
chrV-NC_003076:2985446-2985646	97	3.88e-05	TTGGTTATAT	TACACGTGGA	AGTAAAGTAT
chrI-NC_003070:7270500-7270700	7	4.26e-05	GACCGCC	TCCACGTGGT	CACACAGCTT
chrII-NC_003071:18423231-18423431	94	4.26e-05	CGAGGATCAC	CGCACGTGTC	AACTGCAGGT
chrIII-NC_003074:8943216-8943416	57	4.26e-05	GTTAAATTTT	GAGACGTGAC	AGTTAGCCAC
chrIII-NC_003074:18855259-18855459	94	4.26e-05	GTTCCTAGGC	ACCACGTGCC	ATGCACCTGA
chrV-NC_003076:448654-448854	97	5.01e-05	TTGTTGTCCA	TACACGTGTT	ATATGCATAC
chrV-NC_003076:26806403-26806603	97	5.01e-05	CTCTCCACAA	CTCACGTGAC	TCACGTGAAT
chrI-NC_003070:30371959-30372159	94	5.01e-05	GATCTTATAG	TACACGTGTT	TGGGTCAAAT
chrV-NC_003076:24476843-24477043	97	5.77e-05	GGGCCCAATG	ATCACGTGAC	AGAGGTGATG
chrV-NC_003076:4460424-4460624	97	5.77e-05	AGCAAGAGAA	AACACGTGGA	CCAATGATGT
chrV-NC_003076:16135188-16135388	94	5.77e-05	GAGAGTAGAT	AACACGTGTA	TATGAACGCG
chrI-NC_003070:6867963-6868163	135	5.77e-05	TTGTAACTGA	ATCACGTGAC	TACTTCTTGT
chrIII-NC_003074:8213415-8213615	97	5.77e-05	GAACTCGAGA	AACACGTGGA	TTTGGACAGT
chrV-NC_003076:26155-26355	97	6.29e-05	GCGCGTGGGA	GGCACGTGAT	GGAACTAAGT
chrV-NC_003076:8376625-8376825	21	6.29e-05	TTATCTCAAC	CACACGTGTT	CTGCTTATCC
chrI-NC_003070:23286838-23287038	157	6.29e-05	CACTCTCATT	GGCACGTGAT	TCTCACGCTC
chrIII-NC_003074:19620573-19620773	94	6.29e-05	CACGCGAGGC	CTCACGTGCC	TTAATTATTT
chrV-NC_003076:1212725-1212925	97	7.09e-05	TCCGGTAAAC	TCCACGTGAA	GCAGTGTAGA
chrV-NC_003076:766920-767120	97	7.09e-05	CCCTATTTAG	TCCACGTGAA	GTAATCGGAC
chrIV-NC_003075:9443322-9443522	97	7.09e-05	TAGGGTCAGA	TCCACGTGAA	GTTCACATGC
chrII-NC_003071:14450955-14451155	94	7.09e-05	AATGAAGAAG	ATCACGTGCC	ATGCACCTGA
chrV-NC_003076:16451031-16451231	72	7.74e-05	CGTTTACCTT	GTCACGTGAG	CAACCCAAAC
chrII-NC_003071:19227465-19227665	102	7.74e-05	CGCTGGACAC	GTCACGCGTC	AATTTTTGTA
chrIII-NC_003074:12453857-12454057	94	7.74e-05	AGGGTGAGAG	GTCACGTGAG	GGAGTAAAGA
chrV-NC_003076:266618-266818	97	8.31e-05	CGCGACTAAG	GTGACGTGGA	AAGGCCGGCC
chrV-NC_003076:23773879-23774079	97	8.31e-05	GGTGTTTTGT	GTGACGTGGA	TGAAAGGTAA
chrIII-NC_003074:877449-877649	94	9.16e-05	AAAGTAAGAT	TGCACGTGTA	CACTGTTCCA
chrIV-NC_003075:10600009-10600209	94	1.00e-04	ATGGTCCATA	CCCACGTGCA	TGGGAACTGT
chrIV-NC_003075:14141422-14141622	97	1.00e-04	CCCCTCTCTG	TACACGTGGG	TCCCACTAAG
chrII-NC_003071:19015799-19015999	116	1.00e-04	ACGCCATCGT	GCGACGTGAA	AATTGGAGAA
chrIII-NC_003074:4358519-4358719	101	1.00e-04	AGAAGCACGT	GTGACGTGTT	GAGCAGATAA
chrIV-NC_003075:14331411-14331611	94	1.18e-04	TACGGTCACT	TTCACGTGCA	AAAAGCCCAA
chrIII-NC_003074:16301670-16301870	131	1.28e-04	GTGCGTGTGA	GTCACGCGAC	CCCAATATTT
chrIV-NC_003075:17048860-17049060	94	1.36e-04	ATTGGCCATG	TTCACGTGCT	CTAGTGGGCC
chrII-NC_003071:19491297-19491497	71	1.36e-04	TTTTCTTTGT	GAGACGTGTG	TCCTCGTCAA
chrIII-NC_003074:2056022-2056222	94	1.36e-04	AAACGAAAGG	ATGACGTGTC	ATATTACTAT
chrI-NC_003070:30267504-30267704	97	1.43e-04	TTGAACAAAA	ATCACGTGAT	TGAGAGATAA
chrI-NC_003070:10353875-10354075	97	1.43e-04	TAAAAAGGTA	TGCACGTGAA	CGCTAAAAGA
chrIII-NC_003074:4359967-4360167	97	1.43e-04	TTTAAGACGA	GGGACGTGGT	TTGAGAAACA
chrII-NC_003071:9770677-9770877	97	1.51e-04	AAAAATCTAC	TCGACGTGGA	GCGACCAGTG
chrIII-NC_003074:2348858-2349058	97	1.51e-04	TTGTTATGTG	TCGACGTGGA	AGTAACACGT
chrI-NC_003070:26043093-26043293	185	1.59e-04	TTATTTAAGT	TAGACGTGTA	TTCCT
chrIII-NC_003074:5236683-5236883	94	1.67e-04	TTCCTGAAAT	TGCACGTGTG	AGTCAGCATG
chrIII-NC_003074:5236747-5236947	30	1.67e-04	TTCCTGAAAT	TGCACGTGTG	AGTCAGCATG
chrI-NC_003070:5070745-5070945	34	1.79e-04	TCCACATCAA	TTCACGCGTC	ACATAAACAA
chrII-NC_003071:12185823-12186023	94	1.79e-04	ACTGTCTACA	AGGACGTGTC	ATGTCTTGGT
chrIII-NC_003074:9373252-9373452	97	1.79e-04	GTTGGCCCGC	CGCACGTGAT	CGAGCCTATC
chrIV-NC_003075:18318587-18318787	97	1.88e-04	GATCTCTCCT	CACACGTGCG	TCTGTTATTT
chrIII-NC_003074:338008-338208	51	1.96e-04	TTCTCGACAC	ACGACGTGTT	GATGCTCGCA
chrI-NC_003070:16713723-16713923	97	2.07e-04	CATGCATAAA	TTGACGTGGT	GACTTCGTGG
chrI-NC_003070:5968015-5968215	94	2.07e-04	AGAAGAAGAA	ATCACGTGAG	TATTGTTGGT
chrIV-NC_003075:8100451-8100651	39	2.19e-04	TACACTGTAT	CTGACGTGTT	TTTGAGTTGA
chrIV-NC_003075:2661596-2661796	94	2.30e-04	AGAATCAAAA	CCCACGCGCC	TCTCGTCTTC
chrIII-NC_003074:21448653-21448853	94	2.30e-04	ACGGATTTCA	CCCACGCGCC	CCCTTTTTGG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name	Lowest p-value	Motif Location
chrIII-NC_003074:22859396-22859596	1.86e-05
chrIII-NC_003074:2056022-2056222	1.36e-04
chrIII-NC_003074:2348858-2349058	1.51e-04
chrIII-NC_003074:20476530-20476730	2.98e-05
chrIII-NC_003074:7503344-7503544	2.74e-05
chrIII-NC_003074:21448653-21448853	2.30e-04
chrIII-NC_003074:9373252-9373452	1.79e-04
chrIII-NC_003074:21969467-21969667	2.98e-05
chrIII-NC_003074:338008-338208	1.96e-04
chrIII-NC_003074:8213415-8213615	5.77e-05
chrIII-NC_003074:20251636-20251836	2.98e-05
chrIII-NC_003074:4359967-4360167	1.43e-04
chrIII-NC_003074:16301670-16301870	1.28e-04
chrIII-NC_003074:877449-877649	9.16e-05
chrIII-NC_003074:4358519-4358719	1.00e-04
chrIII-NC_003074:18855259-18855459	4.26e-05
chrIII-NC_003074:5470385-5470585	5.91e-06
chrIII-NC_003074:19620573-19620773	6.29e-05
chrIII-NC_003074:1175197-1175397	1.17e-05
chrIII-NC_003074:8943216-8943416	4.26e-05
chrIII-NC_003074:9717966-9718166	5.91e-06
chrIII-NC_003074:12453857-12454057	7.74e-05
chrIII-NC_003074:5236747-5236947	1.67e-04
chrIII-NC_003074:16755545-16755745	2.65e-06
chrIII-NC_003074:5236683-5236883	1.67e-04
chrII-NC_003071:7935107-7935307	1.19e-06
chrII-NC_003071:18882618-18882818	5.91e-06
chrII-NC_003071:19114215-19114415	1.12e-05
chrII-NC_003071:17189231-17189431	5.91e-06
chrII-NC_003071:560631-560831	4.30e-06
chrII-NC_003071:12108197-12108397	4.30e-06
chrII-NC_003071:12173602-12173802	8.84e-06
chrII-NC_003071:19227465-19227665	7.74e-05
chrII-NC_003071:19491297-19491497	1.36e-04
chrII-NC_003071:15099380-15099580	1.17e-05
chrII-NC_003071:14450955-14451155	7.09e-05
chrII-NC_003071:9770677-9770877	1.51e-04
chrII-NC_003071:17975979-17976179	8.84e-06
chrII-NC_003071:19015799-19015999	1.00e-04
chrII-NC_003071:8544091-8544291	8.84e-06
chrII-NC_003071:12185823-12186023	1.79e-04
chrII-NC_003071:17796012-17796212	2.98e-05
chrII-NC_003071:18423231-18423431	4.26e-05
chrI-NC_003070:8166392-8166592	5.91e-06
chrI-NC_003070:364212-364412	2.02e-05
chrI-NC_003070:17253659-17253859	5.91e-06
chrI-NC_003070:16467893-16468093	4.57e-07
chrI-NC_003070:30371959-30372159	5.01e-05
chrI-NC_003070:6867963-6868163	5.77e-05
chrI-NC_003070:23126552-23126752	1.92e-06
chrI-NC_003070:23286838-23287038	6.29e-05
chrI-NC_003070:26164321-26164521	1.86e-05
chrI-NC_003070:6174484-6174684	8.84e-06
chrI-NC_003070:26043093-26043293	1.59e-04
chrI-NC_003070:5968015-5968215	2.07e-04
chrI-NC_003070:27294385-27294585	2.37e-05
chrI-NC_003070:25335093-25335293	1.50e-05
chrI-NC_003070:10860458-10860658	1.19e-06
chrI-NC_003070:10353875-10354075	1.43e-04
chrI-NC_003070:18627576-18627776	8.84e-06
chrI-NC_003070:5070745-5070945	1.79e-04
chrI-NC_003070:18942515-18942715	1.92e-06
chrI-NC_003070:30267504-30267704	1.43e-04
chrI-NC_003070:22877423-22877623	4.30e-06
chrI-NC_003070:6899616-6899816	4.57e-07
chrI-NC_003070:30249255-30249455	1.17e-05
chrI-NC_003070:1773727-1773927	8.84e-06
chrI-NC_003070:7930555-7930755	5.91e-06
chrI-NC_003070:21043046-21043246	8.84e-06
chrI-NC_003070:16713723-16713923	2.07e-04
chrI-NC_003070:8596542-8596742	1.19e-06
chrI-NC_003070:4132322-4132522	2.02e-05
chrI-NC_003070:6174672-6174872	1.19e-06
chrI-NC_003070:21133615-21133815	3.43e-05
chrI-NC_003070:7270500-7270700	4.26e-05
chrI-NC_003070:26164485-26164685	5.91e-06
chrI-NC_003070:28143859-28144059	4.57e-07
chrI-NC_003070:28315795-28315995	1.50e-05
chrI-NC_003070:1953781-1953981	2.74e-05
chrIV-NC_003075:13685900-13686100	1.19e-06
chrIV-NC_003075:17535190-17535390	3.43e-05
chrIV-NC_003075:14141422-14141622	1.00e-04
chrIV-NC_003075:6752985-6753185	2.74e-05
chrIV-NC_003075:14118209-14118409	8.84e-06
chrIV-NC_003075:18318587-18318787	1.88e-04
chrIV-NC_003075:16256073-16256273	6.65e-06
chrIV-NC_003075:16656874-16657074	3.43e-05
chrIV-NC_003075:8100451-8100651	2.19e-04
chrIV-NC_003075:2661596-2661796	2.30e-04
chrIV-NC_003075:17048860-17049060	1.36e-04
chrIV-NC_003075:18472024-18472224	1.12e-05
chrIV-NC_003075:10600009-10600209	1.00e-04
chrIV-NC_003075:14331411-14331611	1.18e-04
chrIV-NC_003075:13016235-13016435	4.30e-06
chrIV-NC_003075:15231300-15231500	1.50e-05
chrIV-NC_003075:17334368-17334568	8.84e-06
chrIV-NC_003075:9443322-9443522	7.09e-05
chrIV-NC_003075:7369585-7369785	8.84e-06
chrV-NC_003076:16135188-16135388	5.77e-05
chrV-NC_003076:1375822-1376022	4.57e-07
chrV-NC_003076:26806403-26806603	5.01e-05
chrV-NC_003076:24836685-24836885	5.91e-06
chrV-NC_003076:2985446-2985646	3.88e-05
chrV-NC_003076:25086812-25087012	3.88e-05
chrV-NC_003076:8376625-8376825	6.29e-05
chrV-NC_003076:8359800-8360000	5.91e-06
chrV-NC_003076:16635429-16635629	1.86e-05
chrV-NC_003076:16451031-16451231	7.74e-05
chrV-NC_003076:23773879-23774079	8.31e-05
chrV-NC_003076:9133236-9133436	2.65e-06
chrV-NC_003076:766920-767120	7.09e-05
chrV-NC_003076:1212725-1212925	7.09e-05
chrV-NC_003076:18358999-18359199	3.43e-05
chrV-NC_003076:4460424-4460624	5.77e-05
chrV-NC_003076:26155-26355	6.29e-05
chrV-NC_003076:8376552-8376752	1.19e-06
chrV-NC_003076:5205507-5205707	8.84e-06
chrV-NC_003076:448654-448854	5.01e-05
chrV-NC_003076:266618-266818	8.31e-05
chrV-NC_003076:24476843-24477043	5.77e-05
chrV-NC_003076:25158624-25158824	1.19e-06
		0 50 100 150 200

Time 69.3 secs.

Motif 2

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Summary

Sequence Logo

E-value	7.6e-025
Width	10
Sites	115

Standard Reverse Complement

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Orientation: SSC: Format: Width: cm Height: cm

Regular expression

AAA[ATG][AG][GA]A[AG]A[GA]

Further Analysis

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:24953160-24953360	11	1.14e-06	CGCTGCGGCA	AAAGAGAGAG	AGAGAGAGAG
chrII-NC_003071:19100983-19101183	110	1.14e-06	GCATTGAGAG	AAAGAGAGAG	AGAGATGGTG
chrIII-NC_003074:20121130-20121330	42	1.14e-06	AGTGAAATAG	AAAGAGAGAG	ATGGAGTTGA
chrV-NC_003076:23785171-23785371	172	4.78e-06	GAGTTAAAAA	AAAAAGAGAG	AAGTAGGCAG
chrII-NC_003071:12946397-12946597	129	4.78e-06	AAGAGAAAAG	AAAGAGAAAG	AGACAAGAGA
chrII-NC_003071:12321522-12321722	64	4.78e-06	AACTGGGGAT	AAAGAGAAAG	GTTAGATAAT
chrIII-NC_003074:2056022-2056222	165	4.78e-06	CTGACAGGGC	AAAAAGAGAG	GGGCCAAAAA
chrV-NC_003076:266618-266818	174	7.68e-06	ATTACAGAAA	AAAAAGAAAG	GAGGAAAAAG
chrIV-NC_003075:13017928-13018128	46	7.68e-06	ATTAGTATAA	AAAAAGAAAG	TAAAACTTGA
chrI-NC_003070:21043046-21043246	76	7.68e-06	CGTAAATACA	AAAAAGAAAG	CGACAGATGC
chrIV-NC_003075:13854216-13854416	117	1.43e-05	TAGCAACTGC	AAATAGAAAG	GTCATGTAGT
chrIV-NC_003075:8100451-8100651	127	1.43e-05	CACACAACAT	AAATAGAAAG	TTTTATTATC
chrIV-NC_003075:13023435-13023635	167	1.43e-05	CTTTAGTGGA	AAATAGAAAG	TAAAGCTTGA
chrI-NC_003070:8598740-8598940	134	1.43e-05	TCGTTACCCA	AAATAGAAAG	ATGGAGTTAT
chrI-NC_003070:20876436-20876636	101	1.43e-05	TATTTGACTG	AAATAGAAAG	TAGAAACATA
chrI-NC_003070:3108015-3108215	66	1.43e-05	AAATTTCCTA	AAATAGAAAG	ACTATGAAAC
chrIII-NC_003074:5470385-5470585	58	1.43e-05	GAGAGGCAAC	AAAGAGAGAA	GAAAATAGAC
chrIII-NC_003074:8943976-8944176	93	1.43e-05	TAAAAAAGGA	AAAGAGAGAA	TAGTTGTAAG
chrV-NC_003076:24935013-24935213	49	2.08e-05	ACCTCTTCAT	AAAAAGAGAA	GCTTTAATCT
chrI-NC_003070:28315795-28315995	4	2.08e-05	AAAC	AAAAAGAGAA	ATACGAGCCG
chrI-NC_003070:27294385-27294585	9	2.08e-05	GAGATTAAG	AAAAAGAGAA	GAAAGGGGAG
chrIII-NC_003074:4340381-4340581	66	2.08e-05	AAAGATAAAG	AAAGAGAAAA	AATAATGAAG
chrIII-NC_003074:19276369-19276569	37	2.08e-05	CGAGAGAAGA	AAAAAGAGAA	AATGGGCCCA
chrV-NC_003076:756609-756809	190	2.77e-05	GTGAAAGAAG	AAAAAGAAAA
chrV-NC_003076:21723045-21723245	16	2.77e-05	GTTGATTTAA	AAAAAGAAAA	TATAAAACTA
chrII-NC_003071:18423231-18423431	125	2.77e-05	AGTTTAAAAA	AAAAAGAAAA	AAGTAGGGCA
chrII-NC_003071:17819771-17819971	46	2.77e-05	GTAGGGCAAT	AAAAAGAAAA	GGAGAATAAA
chrV-NC_003076:3865585-3865785	114	3.02e-05	GTTTTGCCTA	AAAAGGAAAG	TTGTCAAGGA
chrIV-NC_003075:12051681-12051881	81	3.02e-05	AAGAAACCAA	AAAAGGAAAG	AAGAAGAATC
chrIV-NC_003075:272143-272343	3	3.02e-05	ATC	AGAGAGAGAG	AGAGATTTTT
chrI-NC_003070:12228596-12228796	45	3.02e-05	AAACATGGCA	AGAGAGAGAG	GAGAGAAATT
chrI-NC_003070:26043093-26043293	41	3.02e-05	TATTAATGTA	AGAGAGAGAG	AGAAGTGAAA
chrI-NC_003070:7930400-7930600	107	3.02e-05	GATTAGCCGA	AAAAGGAAAG	TATGAGATGC
chrI-NC_003070:364212-364412	171	3.02e-05	TAGAGAAAGA	AGAGAGAGAG	AGAGTTGGCG
chrI-NC_003070:8166392-8166592	116	3.02e-05	AGATGCTATA	AGAGAGAGAG	GAAAGAAATG
chrII-NC_003071:17508903-17509103	28	3.02e-05	ACAAAAGGGG	AGAGAGAGAG	AGAGAGTTGA
chrIII-NC_003074:8943216-8943416	120	3.02e-05	TCATTGGGCT	AGAGAGAGAG	AGAGTATAAA
chrIII-NC_003074:17739733-17739933	0	3.02e-05		AGAGAGAGAG	AGAGAGACGG
chrIII-NC_003074:1976038-1976238	18	3.02e-05	AAATATGAAT	AGAGAGAGAG	ACTACACTAT
chrV-NC_003076:18215713-18215913	20	3.25e-05	AGAGAGACAG	AGAGAGAAAG	ATAGATTGAT
chrV-NC_003076:10356668-10356868	39	3.73e-05	AATAATAGCA	AGAAAGAAAG	CATTGGAGTG
chrV-NC_003076:24239953-24240153	53	4.31e-05	TGACTGATCG	AAATAGAAAA	TCACATATAT
chrV-NC_003076:23391751-23391951	58	4.31e-05	GAGACTCCCA	AAATAGAAAA	TTTGTACAAA
chrV-NC_003076:7265855-7266055	38	4.31e-05	TGGCAAAAAA	AAATAGAAAA	TGTCTTTTCT
chrV-NC_003076:2985446-2985646	0	4.31e-05		AAATGGAGAG	GACTGTTTTA
chrI-NC_003070:29406817-29407017	57	4.31e-05	TTAGGTCTAA	AAATAGAAAA	GAGTAGTAGT
chrIII-NC_003074:19837055-19837255	80	4.31e-05	CCGATATAGA	AAATAGAAAA	TTGCACACTT
chrV-NC_003076:15460593-15460793	89	4.61e-05	TCACTTCTTA	AAATGGAAAG	TTAGTTACTC
chrV-NC_003076:7524647-7524847	86	4.61e-05	ACTCTCACGT	AAATGGAAAG	CGCGTGTCTG
chrIV-NC_003075:17395740-17395940	74	4.61e-05	AGATTTACAA	AAATGGAAAG	TCTTTGGACC
chrI-NC_003070:25736387-25736587	99	4.61e-05	AGATCAACAA	AAATGGAAAG	CAAAGACCAA
chrI-NC_003070:16713584-16713784	84	4.61e-05	GACAAACCAA	AAATGGAAAG	AAACAATTCT
chrIII-NC_003074:20988101-20988301	31	4.61e-05	AGAAATTATC	AAAGGGAGAA	GGAGCGATCG
chrII-NC_003071:641561-641761	2	5.08e-05	AA	AAAGGGAAAA	ACACATTTCT
chrIII-NC_003074:3003367-3003567	63	5.08e-05	TTATTTCCAA	AAAGGGAAAA	TCTAATGAAA
chrII-NC_003071:8544091-8544291	64	5.85e-05	TATTTTAGCT	AAAAGGAAAA	AGTGACACGT
chrII-NC_003071:17975979-17976179	187	5.85e-05	TTACATTTAT	AAAAGGAAAA	AAC
chrIII-NC_003074:21969467-21969667	38	5.85e-05	TGGTATTCTT	AAAAGGAAAA	AATGAGGGAC
chrIV-NC_003075:16860561-16860761	112	6.84e-05	CCAAATCTTG	AAAAAAAGAG	TCATTTTTTC
chrIV-NC_003075:18318587-18318787	171	6.84e-05	TTTCTTTGTG	AAAGAAAAAG	AAGAAGTTTA
chrIII-NC_003074:16301670-16301870	75	6.84e-05	AGAGTCGCAG	AGAAAGAGAA	TAATAGAAAC
chrV-NC_003076:26807915-26808115	182	7.81e-05	AATAATTAAA	AAAAAAAAAG	CCTTTGCA
chrIV-NC_003075:10600009-10600209	14	7.81e-05	GATAAAAATG	AGAAAGAAAA	ATAAGGAAGA
chrIV-NC_003075:7349242-7349442	168	7.81e-05	CTCCCAACCA	AAAAAAAAAG	ATAACTAATT
chrIV-NC_003075:17397611-17397811	5	7.81e-05	AAATG	AAAAAAAAAG	GGGTAAATGG
chrII-NC_003071:8760319-8760519	6	7.81e-05	AAAAAA	AAAAAAAAAG	GCGATGATGA
chrV-NC_003076:5962181-5962381	152	8.34e-05	TATTATTTGG	AAGGAGAAAG	CAATGTTATT
chrV-NC_003076:25900220-25900420	10	8.88e-05	TGACCAAAAG	AAGAAGAAAG	TGTGATTCTG
chrIV-NC_003075:1494888-1495088	149	8.88e-05	CCTGCAAATT	AAGAAGAAAG	AACTGGAGAA
chrI-NC_003070:5968015-5968215	10	8.88e-05	GTTTATTATT	AAAGAGCGAG	GGAAAGAGAG
chrV-NC_003076:24239588-24239788	107	9.59e-05	TGGTCCTATC	AAATAAAGAG	TGTTGGTCCA
chrI-NC_003070:28804880-28805080	142	9.59e-05	TGGACGGGTA	AAAAAGCGAG	TACACAAAAA
chrI-NC_003070:18942515-18942715	149	1.10e-04	TAAAAAGAGC	AAAGAAAGAA	ACAACAAAGA
chrII-NC_003071:14450955-14451155	56	1.10e-04	TCACTTCTAA	AAATAAAAAG	TGAAATTATT
chrIII-NC_003074:19620573-19620773	60	1.10e-04	GATGGGCCGT	AAATAAAAAG	CCTAGTCACG
chrV-NC_003076:25972709-25972909	139	1.25e-04	TTATTATTTC	AAAAAGACAG	ATGACCTAAC
chrV-NC_003076:973984-974184	65	1.42e-04	TGATTTGGTG	AAGGAGAGAA	AGTGGTGACG
chrV-NC_003076:14755579-14755779	89	1.42e-04	GTCTTCAATG	AAAAAAAAAA	CCATTTATCC
chrIV-NC_003075:11971410-11971610	22	1.42e-04	TTTTTTACAC	AAAAAAAAAA	AAAAACAATT
chrI-NC_003070:6899616-6899816	174	1.42e-04	CAAAAGTTAC	AAAGGAAAAG	CTGTGGACCT
chrI-NC_003070:23412259-23412459	187	1.42e-04	TCTCAGCAAT	AAAAAAAAAA	ATG
chrI-NC_003070:24732448-24732648	2	1.42e-04	AA	AGAAGGAGAA	TTATGGGATT
chrII-NC_003071:16505491-16505691	115	1.42e-04	AAGAGGAAGA	AGAAGGAGAA	GAAGAAGAAG
chrII-NC_003071:15099380-15099580	42	1.42e-04	CCAATCAACC	AAAAAAAAAA	ACTCGTCTTT
chrI-NC_003070:7930555-7930755	121	1.53e-04	GACCTGTTCT	AGAGAAAGAG	GTGCGTTATT
chrIII-NC_003074:4606158-4606358	50	1.53e-04	TAATAAAAAC	AAGAAGAGAA	TAGATGATGA
chrII-NC_003071:10628311-10628511	97	1.64e-04	ATATTTCCAA	AAATAGCAAG	TTCTTGTAAT
chrIV-NC_003075:17798664-17798864	63	1.82e-04	TGATAAGCAA	AAATAGACAG	AAGATGACAG
chrII-NC_003071:11689161-11689361	42	1.82e-04	TGTGTGTTAT	AAAGAGCAAA	CACTTGATAT
chrII-NC_003071:17189231-17189431	160	1.82e-04	CCAAGCTTTA	AAATAAAGAA	AGTTCTTAAA
chrIII-NC_003074:7503344-7503544	121	1.82e-04	CAATAATGGA	AGGGAGAGAG	CAAGAGCCAA
chrIV-NC_003075:12769653-12769853	114	2.02e-04	GCACATGGCC	ACAAAGAAAG	TTGGTTAGTT
chrI-NC_003070:28467619-28467819	79	2.02e-04	TCCTTTTCCT	AAAGAGACAA	ATTTGCCCCT
chrI-NC_003070:22877423-22877623	113	2.02e-04	ATTAATAAGC	AAATAAAAAA	CACACCAAAC
chrIII-NC_003074:4358519-4358719	43	2.02e-04	ATTCTGGAGG	AAATAAAAAA	ACAAAAACAA
chrIII-NC_003074:1395996-1396196	2	2.02e-04	AA	ACAAAGAAAG	CTGGGCCATG
chrI-NC_003070:28143859-28144059	68	2.16e-04	GATATAATGC	AAAAAGACAA	AAGAGAGTTG
chrI-NC_003070:21517777-21517977	102	2.16e-04	AAGAATCTAT	AAAAGGCAAG	TAAAATCAGA
chrI-NC_003070:10353875-10354075	5	2.16e-04	TTGAG	AAAAAGACAA	GCTCTAATTT
chrV-NC_003076:25086812-25087012	140	2.30e-04	CTCCGGATAT	AGAAAGCGAG	GATCTAGGAC
chrIV-NC_003075:17409244-17409444	157	2.30e-04	ATTTACATAA	AAGTAGAAAA	TCTCGTGGTC
chrI-NC_003070:29399321-29399521	85	2.30e-04	GAAAAAGAAT	AAAAGAAGAA	GACTTACTAT
chrV-NC_003076:9133236-9133436	140	2.46e-04	TTCTTGCCGA	AAGTGGAAAG	AAAGATATGG
chrI-NC_003070:24760580-24760780	116	2.46e-04	GATGAATCCA	AAGTGGAAAG	TATTGGACCC
chrII-NC_003071:12326803-12327003	13	2.46e-04	TCTCCAACAT	AAAAGAAAAA	CACTTACTTA
chrIII-NC_003074:2016186-2016386	49	2.46e-04	TATTAGGGAC	ACATAGAGAG	ACGTACACGG
chrIV-NC_003075:11425880-11426080	7	2.84e-04	AATAAAC	ACAAAGAGAA	TCCAATACGC
chrV-NC_003076:3857021-3857221	38	3.04e-04	GGTTTCCCCC	AAATGAAGAA	AGGAGGAATC
chrV-NC_003076:7266265-7266465	132	3.04e-04	TGGGAATTTA	AGGAAGAGAA	TCCATATGAC
chrI-NC_003070:20084599-20084799	168	3.04e-04	TTGTAGTACA	AAATGAAGAA	AGGATGACGA
chrI-NC_003070:18627576-18627776	184	3.04e-04	CAACGTCGAA	AAAGGGCAAA	CATCGA
chrIII-NC_003074:19453239-19453439	158	3.35e-04	AGCTGACCAA	AAAAAACGAG	CATCTACGTT
chrIII-NC_003074:11386965-11387165	181	3.35e-04	TTTTTTATTC	AGATAAAGAA	AATGAGTGT
chrV-NC_003076:9628962-9629162	154	3.53e-04	TTCTATTTCC	AGATAAAAAA	ACTTTACTCA
chrIII-NC_003074:20988214-20988414	39	3.88e-04	AAATTGGGGA	AGAAGAAGAA	GAAGGCTTTA

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:2056022-2056222	4.78e-06
chrIII-NC_003074:19276369-19276569	2.08e-05
chrIII-NC_003074:1395996-1396196	2.02e-04
chrIII-NC_003074:1976038-1976238	3.02e-05
chrIII-NC_003074:2016186-2016386	2.46e-04
chrIII-NC_003074:7503344-7503544	1.82e-04
chrIII-NC_003074:4340381-4340581	2.08e-05
chrIII-NC_003074:21969467-21969667	5.85e-05
chrIII-NC_003074:11386965-11387165	3.35e-04
chrIII-NC_003074:19837055-19837255	4.31e-05
chrIII-NC_003074:20121130-20121330	1.14e-06
chrIII-NC_003074:16301670-16301870	6.84e-05
chrIII-NC_003074:8943976-8944176	1.43e-05
chrIII-NC_003074:17739733-17739933	3.02e-05
chrIII-NC_003074:4358519-4358719	2.02e-04
chrIII-NC_003074:5470385-5470585	1.43e-05
chrIII-NC_003074:19620573-19620773	1.10e-04
chrIII-NC_003074:4606158-4606358	1.53e-04
chrIII-NC_003074:8943216-8943416	3.02e-05
chrIII-NC_003074:20988101-20988301	4.61e-05
chrIII-NC_003074:19453239-19453439	3.35e-04
chrIII-NC_003074:3003367-3003567	5.08e-05
chrIII-NC_003074:20988214-20988414	3.88e-04
chrII-NC_003071:17508903-17509103	3.02e-05
chrII-NC_003071:17189231-17189431	1.82e-04
chrII-NC_003071:19100983-19101183	1.14e-06
chrII-NC_003071:12326803-12327003	2.46e-04
chrII-NC_003071:8760319-8760519	7.81e-05
chrII-NC_003071:12321522-12321722	4.78e-06
chrII-NC_003071:11689161-11689361	1.82e-04
chrII-NC_003071:10628311-10628511	1.64e-04
chrII-NC_003071:15099380-15099580	1.42e-04
chrII-NC_003071:14450955-14451155	1.10e-04
chrII-NC_003071:641561-641761	5.08e-05
chrII-NC_003071:12946397-12946597	4.78e-06
chrII-NC_003071:17819771-17819971	2.77e-05
chrII-NC_003071:17975979-17976179	5.85e-05
chrII-NC_003071:16505491-16505691	1.42e-04
chrII-NC_003071:8544091-8544291	5.85e-05
chrII-NC_003071:18423231-18423431	2.77e-05
chrI-NC_003070:8166392-8166592	3.02e-05
chrI-NC_003070:364212-364412	3.02e-05
chrI-NC_003070:7930400-7930600	3.02e-05
chrI-NC_003070:24732448-24732648	1.42e-04
chrI-NC_003070:23412259-23412459	1.42e-04
chrI-NC_003070:26043093-26043293	3.02e-05
chrI-NC_003070:5968015-5968215	8.88e-05
chrI-NC_003070:24760580-24760780	2.46e-04
chrI-NC_003070:27294385-27294585	2.08e-05
chrI-NC_003070:10353875-10354075	2.16e-04
chrI-NC_003070:18627576-18627776	3.04e-04
chrI-NC_003070:29406817-29407017	4.31e-05
chrI-NC_003070:29399321-29399521	2.30e-04
chrI-NC_003070:18942515-18942715	1.10e-04
chrI-NC_003070:3108015-3108215	1.43e-05
chrI-NC_003070:20876436-20876636	1.43e-05
chrI-NC_003070:28804880-28805080	9.59e-05
chrI-NC_003070:22877423-22877623	2.02e-04
chrI-NC_003070:6899616-6899816	1.42e-04
chrI-NC_003070:8598740-8598940	1.43e-05
chrI-NC_003070:28467619-28467819	2.02e-04
chrI-NC_003070:20084599-20084799	3.04e-04
chrI-NC_003070:16713584-16713784	4.61e-05
chrI-NC_003070:12228596-12228796	3.02e-05
chrI-NC_003070:21517777-21517977	2.16e-04
chrI-NC_003070:7930555-7930755	1.53e-04
chrI-NC_003070:21043046-21043246	7.68e-06
chrI-NC_003070:25736387-25736587	4.61e-05
chrI-NC_003070:28143859-28144059	2.16e-04
chrI-NC_003070:28315795-28315995	2.08e-05
chrIV-NC_003075:13017928-13018128	7.68e-06
chrIV-NC_003075:13023435-13023635	1.43e-05
chrIV-NC_003075:17395740-17395940	4.61e-05
chrIV-NC_003075:18318587-18318787	6.84e-05
chrIV-NC_003075:11425880-11426080	2.84e-04
chrIV-NC_003075:272143-272343	3.02e-05
chrIV-NC_003075:17397611-17397811	7.81e-05
chrIV-NC_003075:8100451-8100651	1.43e-05
chrIV-NC_003075:12769653-12769853	2.02e-04
chrIV-NC_003075:13854216-13854416	1.43e-05
chrIV-NC_003075:16860561-16860761	6.84e-05
chrIV-NC_003075:7349242-7349442	7.81e-05
chrIV-NC_003075:1494888-1495088	8.88e-05
chrIV-NC_003075:10600009-10600209	7.81e-05
chrIV-NC_003075:11971410-11971610	1.42e-04
chrIV-NC_003075:17798664-17798864	1.82e-04
chrIV-NC_003075:17409244-17409444	2.30e-04
chrIV-NC_003075:12051681-12051881	3.02e-05
chrV-NC_003076:18215713-18215913	3.25e-05
chrV-NC_003076:7266265-7266465	3.04e-04
chrV-NC_003076:3865585-3865785	3.02e-05
chrV-NC_003076:7524647-7524847	4.61e-05
chrV-NC_003076:2985446-2985646	4.31e-05
chrV-NC_003076:25086812-25087012	2.30e-04
chrV-NC_003076:7265855-7266055	4.31e-05
chrV-NC_003076:21723045-21723245	2.77e-05
chrV-NC_003076:24935013-24935213	2.08e-05
chrV-NC_003076:23785171-23785371	4.78e-06
chrV-NC_003076:26807915-26808115	7.81e-05
chrV-NC_003076:25972709-25972909	1.25e-04
chrV-NC_003076:25900220-25900420	8.88e-05
chrV-NC_003076:24239588-24239788	9.59e-05
chrV-NC_003076:9133236-9133436	2.46e-04
chrV-NC_003076:24953160-24953360	1.14e-06
chrV-NC_003076:14755579-14755779	1.42e-04
chrV-NC_003076:23391751-23391951	4.31e-05
chrV-NC_003076:10356668-10356868	3.73e-05
chrV-NC_003076:15460593-15460793	4.61e-05
chrV-NC_003076:24239953-24240153	4.31e-05
chrV-NC_003076:756609-756809	2.77e-05
chrV-NC_003076:9628962-9629162	3.53e-04
chrV-NC_003076:5962181-5962381	8.34e-05
chrV-NC_003076:266618-266818	7.68e-06
chrV-NC_003076:973984-974184	1.42e-04
chrV-NC_003076:3857021-3857221	3.04e-04
		0 50 100 150 200

Time 132.2 secs.

Motif 3

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Summary

Sequence Logo

E-value	4.2e-044
Width	10
Sites	155

Standard Reverse Complement

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Orientation: SSC: Format: Width: cm Height: cm

Regular expression

T[TC]T[CT][TC][TC]T[TC]T[TC]

Further Analysis

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:25158624-25158824	170	3.06e-06	CACATGGCTG	TTTCTTTCTT	ATGTTGAGAG
chrV-NC_003076:900190-900390	155	3.06e-06	TAAGATTCGA	TTTCTTTCTT	TTTTCAGCAA
chrV-NC_003076:7673076-7673276	4	3.06e-06	CTCC	TTTCTTTCTT	TAGTTAAGAG
chrV-NC_003076:7265855-7266055	53	3.06e-06	GAAAATGTCT	TTTCTTTCTT	TCATTAAACT
chrII-NC_003071:7934198-7934398	67	3.06e-06	GTAACGTTTT	TTTCTTTCTT	TCTTCTCTCT
chrV-NC_003076:7266265-7266465	97	9.90e-06	ATAAATTTAC	TTTCTTTTTT	GGGCATGGGG
chrIV-NC_003075:17334368-17334568	179	9.90e-06	AATTCGGATC	TTTCCTTCTT	CTTTTTTTTC
chrIV-NC_003075:17048860-17049060	155	9.90e-06	TAATTGTTAC	TTTCTTTTTT	GGTCAGTTGG
chrIV-NC_003075:8203258-8203458	88	9.90e-06	ACCCCTTTAC	TTTCTTTTTT	TTCTGGTGGT
chrI-NC_003070:26097575-26097775	72	9.90e-06	TCAACGCGTC	TTTCCTTCTT	GATTCTGTTA
chrI-NC_003070:8596542-8596742	177	9.90e-06	TTTATAAATT	TTTCTTTTTT	ACTTATAAAA
chrI-NC_003070:23238411-23238611	114	9.90e-06	TGTATCGTGC	TTTCTTTTTT	GGGTCGTCGA
chrII-NC_003071:19015799-19015999	46	9.90e-06	TTTTTCTTCC	TTTCTTTTTT	GGATTCTCCT
chrII-NC_003071:8760319-8760519	129	9.90e-06	GACAAAACCG	TTTCTTTTTT	GGGCGTTAGT
chrIII-NC_003074:22141193-22141393	9	9.90e-06	ACGTTTTCA	TTTCTTTTTT	CGATTTAGTA
chrV-NC_003076:5962181-5962381	112	1.30e-05	TCTCTATAGT	TTTCCTTTTT	GGGCAATGTA
chrV-NC_003076:7960250-7960450	54	1.30e-05	TCTTTACTTT	TTTCCTTTTT	CAACTCGCAT
chrV-NC_003076:26807915-26808115	74	1.30e-05	TGCATTTTTC	TTTCCTTTTT	CATGATAGCA
chrI-NC_003070:25320229-25320429	96	1.30e-05	AAAATTCAAG	TTTCCTTTTT	TAGATTTTGA
chrI-NC_003070:21517777-21517977	125	1.30e-05	AATCAGAAAG	TTTCCTTTTT	TAGAAACTAT
chrI-NC_003070:23734604-23734804	89	1.30e-05	GTATCAGAGC	TTTCCTTTTT	TAGAACTATC
chrI-NC_003070:11472862-11473062	108	1.30e-05	GATTCTGAAG	TTTCCTTTTT	TGTTTTGAAA
chrI-NC_003070:24331613-24331813	184	1.30e-05	TAGAAATTAT	TTTCCTTTTT	TGGGGT
chrII-NC_003071:13036795-13036995	46	1.30e-05	GTGTCTCTCA	TTTCCTTTTT	TGACTCTTCT
chrII-NC_003071:8813586-8813786	89	1.30e-05	AGCAGAGTAC	TTTCCTTTTT	AACCGAACCA
chrII-NC_003071:19114215-19114415	138	1.30e-05	AAGGCTTCCC	TTTCCTTTTT	TAACGGATAA
chrII-NC_003071:13036732-13036932	109	1.30e-05	GTGTCTCTCA	TTTCCTTTTT	TGACTCTTCT
chrIII-NC_003074:5216309-5216509	96	1.30e-05	GCAAAAGAAT	TTTCCTTTTT	TGGTTTCTCT
chrIII-NC_003074:5216276-5216476	129	1.30e-05	GCAAAAGAAT	TTTCCTTTTT	TGGTTTCTCT
chrV-NC_003076:5177754-5177954	35	1.68e-05	CTACTTTTTC	TCTCTTTCTT	CCTCAATAAG
chrI-NC_003070:27294385-27294585	125	1.68e-05	TATGGAATGT	TTTCTCTCTT	CCGCTTCCTT
chrIV-NC_003075:7369585-7369785	158	2.53e-05	AGATCTGTCT	TCTCTTTTTT	GTCTTTCTCT
chrII-NC_003071:14193902-14194102	73	2.53e-05	ACGGGTCCAC	TTTCTCTTTT	ACCCAAATAT
chrII-NC_003071:17819771-17819971	129	2.53e-05	AGCCCATACC	TCTCTTTTTT	CCTCTAAACA
chrIII-NC_003074:20988214-20988414	78	2.53e-05	AGGACGTTGG	TCTCCTTCTT	CACCCACTTG
chrII-NC_003071:16111201-16111401	78	3.10e-05	CGATCGAAAA	TTTCCCTTTT	TGAGAAATGT
chrIII-NC_003074:17223729-17223929	118	3.10e-05	TCCAACATTG	TTTCCCTTTT	GAACCACCTG
chrIII-NC_003074:18763347-18763547	107	3.10e-05	TAAAAATAAC	TCTCCTTTTT	TGTTTGTTCA
chrV-NC_003076:26155-26355	157	4.45e-05	GCTTTCTCTC	TCTCTCTCTT	CTCATACTTC
chrIV-NC_003075:13023617-13023817	121	4.45e-05	GGAACCCATC	TTTCTGTTTT	TGGAAAATCG
chrIV-NC_003075:13854216-13854416	75	4.45e-05	CTTTTATAGC	TTTCCTTTTC	AGGAAAGTAT
chrI-NC_003070:1143756-1143956	109	4.45e-05	AAGCTTACTA	TTTCCGTCTT	TCCACGCTAT
chrI-NC_003070:6174672-6174872	143	4.45e-05	ATTTCTGCTT	TCTCTCTCTT	TTTCGTCTTC
chrI-NC_003070:1143820-1144020	45	4.45e-05	AAGCTTACTA	TTTCCGTCTT	TCCACGCTAT
chrI-NC_003070:28955713-28955913	162	4.45e-05	AAGAAGATAC	TTTCCTTTTC	TGGGTCTCAC
chrII-NC_003071:9580055-9580255	133	4.45e-05	CTTGTCACTC	TCTCTCTCTT	CTTTAAAGTC
chrIII-NC_003074:10094903-10095103	43	4.45e-05	GTTCTTTTTT	TTTCCTTTTC	TAAAATACCA
chrV-NC_003076:26805534-26805734	102	5.39e-05	AAAAACTCCC	TCTCCCTCTT	TCTCTCTACG
chrV-NC_003076:24239588-24239788	135	5.39e-05	CAAGATGATT	TTTTTTTCTT	TTTGACAGCA
chrIV-NC_003075:17736542-17736742	157	5.39e-05	GGTTGTTGAC	TTTTTTTCTT	ATGTCGTTGT
chrIV-NC_003075:18318587-18318787	157	5.39e-05	GTGATTTTAT	TTTTTTTCTT	TGTGAAAGAA
chrI-NC_003070:28315795-28315995	128	5.39e-05	TTTGACAAAC	TTTTTTTCTT	GGACCACTAA
chrI-NC_003070:5137983-5138183	2	5.39e-05	TT	TTTTTTTCTT	TGATGAATTT
chrIII-NC_003074:16301670-16301870	99	5.39e-05	AGAAACCCGG	TTTCCGTTTT	TAGTAATGTT
chrIII-NC_003074:20251636-20251836	10	5.39e-05	ACAAATTGTT	TTTTTTTCTT	TGATCGTTCA
chrIII-NC_003074:21969467-21969667	6	5.39e-05	TTCCCC	TTTTTTTCTT	TCCTTCTAAT
chrV-NC_003076:15997367-15997567	0	6.85e-05		TTTTTTTTTT	GGTTGTGTAT
chrV-NC_003076:756609-756809	75	6.85e-05	TAATAACCTC	TTTTTTTTTT	CTAATTTTGG
chrV-NC_003076:9515557-9515757	145	6.85e-05	TCCCCACATT	TTTCTCTCTC	CTTTATTATG
chrV-NC_003076:21437588-21437788	70	6.85e-05	AATCTTTCTA	TTTCTCTCTC	TCTCTCTCTC
chrV-NC_003076:10356668-10356868	16	6.85e-05	TGGTTAAAGA	TTTTTTTTTT	AAAAATAATA
chrIV-NC_003075:12769653-12769853	34	6.85e-05	ACTTTCAAAG	TTTTCTTCTT	CCTTTCGTTC
chrI-NC_003070:22512251-22512451	0	6.85e-05		TTTTTTTTTT	TGGTGGATTC
chrI-NC_003070:24760580-24760780	4	6.85e-05	AAGC	TTTTTTTTTT	TTTTTTTGAT
chrII-NC_003071:18188065-18188265	98	6.85e-05	GTGTAACATA	TCTCTTTCTC	TGTAAGGTGT
chrIII-NC_003074:665060-665260	72	6.85e-05	TTAGACTACA	TTTTTTTTTT	TTGGGGGCAA
chrIV-NC_003075:14266719-14266919	137	8.18e-05	ATGGGCCCAA	TTTTCTTTTT	AAAGCCAAAC
chrI-NC_003070:6746757-6746957	143	8.18e-05	CTTTGCTAGA	TCTCTTTTTC	TCTGTTTTGA
chrI-NC_003070:22343054-22343254	171	8.18e-05	TAATTTTTTT	TCTCCTTCTC	CCCGGCGAAT
chrIII-NC_003074:5236683-5236883	142	8.18e-05	TTTAGAATCA	TTTCTTTCCT	AAAATAGTAA
chrIII-NC_003074:5236747-5236947	78	8.18e-05	TTTAGAATCA	TTTCTTTCCT	AAAATAGTAA
chrIII-NC_003074:611194-611394	123	8.18e-05	TATTTGCAAC	TCTCTGTCTT	CTCTACTACG
chrI-NC_003070:4132322-4132522	126	9.29e-05	TTTGCCGTAC	TTTCTTTCGT	CAAGCTTGAC
chrII-NC_003071:17508903-17509103	165	9.29e-05	TCTTCTTTAG	TTTCTTTTCT	AACCTTTTTT
chrIII-NC_003074:21153604-21153804	168	9.29e-05	GCACAAATAG	TCTCTGTTTT	TTGAAACTCG
chrV-NC_003076:5011856-5012056	176	1.08e-04	TTAAATTAAT	TTTCCTTTCT	TCTCTGCTAC
chrIV-NC_003075:9443322-9443522	56	1.08e-04	CGGACACACC	TTTCTTTTGT	TAGACGCAGT
chrIV-NC_003075:13016235-13016435	77	1.08e-04	GAACGCGGAG	TTTCTGTCTC	TGTGAATGCC
chrIV-NC_003075:2661596-2661796	117	1.08e-04	CGTCTTCGTC	TTTTTCTCTT	CACCAAAAAC
chrIV-NC_003075:11604485-11604685	139	1.08e-04	TTTAAAGTGT	TTTTTCTCTT	CCCCCGACAA
chrV-NC_003076:973984-974184	43	1.27e-04	TTCACTTAGC	TCTCTCTCTC	TGTGATTTGG
chrV-NC_003076:16451031-16451231	186	1.27e-04	TCTCCTCTAA	TCTTCTTCTT	TAGT
chrV-NC_003076:20781642-20781842	60	1.27e-04	GCGGTTCGGT	TCTTCTTCTT	CTTCTTCCTC
chrV-NC_003076:24935013-24935213	2	1.27e-04	CT	TTTTTCTTTT	CCAGAATTAG
chrIV-NC_003075:10600009-10600209	128	1.27e-04	TATCTATATG	TTTCCTTTGT	TGTTCTTTTC
chrIV-NC_003075:17535190-17535390	15	1.27e-04	AATATATAAT	TCTTTTTTTT	ATTTCTGCAG
chrI-NC_003070:28292956-28293156	57	1.27e-04	TTCTTAGAGT	TTTCTGTTTC	CTTATTTGGG
chrI-NC_003070:3108015-3108215	157	1.27e-04	CAATTCCAAA	TCTCTCTCTC	TCTCTCTCTC
chrI-NC_003070:25743975-25744175	167	1.27e-04	CTTTGCCAAT	TCTTCTTCTT	CTTCTTCCTT
chrI-NC_003070:7930400-7930600	36	1.27e-04	GGATCTTGAA	TCTTCTTCTT	GTTCTGTTTT
chrII-NC_003071:15099380-15099580	157	1.27e-04	TTTCCACGAC	TCTCTCTCTC	TCTCTCTCTC
chrIII-NC_003074:4732955-4733155	105	1.27e-04	CGTAACTTAG	TCTTCTTCTT	AGGGGTATTA
chrV-NC_003076:9480398-9480598	164	1.44e-04	TCTCTCCCAC	TCTCCCTCTC	ACGCGACCTG
chrV-NC_003076:8359800-8360000	167	1.44e-04	AGACTAAATA	TCTTCTTTTT	TCCTTGTCTC
chrIV-NC_003075:13475395-13475595	27	1.44e-04	GCGATTGACA	TCTCTCTTTC	CTTGTCTTTG
chrII-NC_003071:18749207-18749407	106	1.44e-04	ATTACCCATC	TCTTCTTTTT	TGAAGAGTAT
chrI-NC_003070:7930555-7930755	55	1.69e-04	TTTCGCTTGT	TTTCTATTTT	AAGAGTTAAG
chrI-NC_003070:26038263-26038463	91	1.69e-04	AGACACATTA	TTTCTATTTT	GAAAAGAATA
chrII-NC_003071:14450955-14451155	168	1.69e-04	CTCTACTCTG	TTTTCTTCTC	GTAAACAGAA
chrII-NC_003071:12849576-12849776	19	1.69e-04	GGATCGGAAG	TTTCTATTTT	TGTGTATATA
chrIII-NC_003074:21448653-21448853	21	1.69e-04	GAATGACGCT	TTTTCTTCTC	ACTACCATCA
chrV-NC_003076:22649608-22649808	176	1.93e-04	AACAACCAAA	TTTTTGTTTT	TCCAAAACAA
chrIV-NC_003075:14331411-14331611	127	1.93e-04	GTGAATACAG	TTTTTGTTTT	AAGCCCATTT
chrIV-NC_003075:17798664-17798864	154	1.93e-04	GTTTTATACT	TTTCTCTTGT	AAACTAAAAA
chrI-NC_003070:17253659-17253859	72	1.93e-04	TATTTCAGAG	TTTCTCTTGT	GACACGACTT
chrIII-NC_003074:822690-822890	84	1.93e-04	GGTGCATGCT	TTTCCATTTT	TAGTCATTTG
chrV-NC_003076:7833316-7833516	67	2.10e-04	TGGACCCAAC	TCTTCCTCTT	TGATCATTAG
chrII-NC_003071:17975979-17976179	161	2.10e-04	TGGTCCAATG	TTTCTTTCGC	TTGGACTTAC
chrII-NC_003071:7935107-7935307	135	2.10e-04	TCATTCAGTT	TCTTCCTCTT	CTTTCCAGAA
chrIV-NC_003075:16256073-16256273	24	2.26e-04	CCCCAAACTG	TTTCTGTTCT	GTAGTGTTCT
chrIV-NC_003075:16613081-16613281	178	2.26e-04	ACTCCAAAAG	TTTCTTTTGC	GATGCTTTGA
chrII-NC_003071:8544091-8544291	3	2.26e-04	TCT	TTTCTGTTCT	CAATTTTATT
chrV-NC_003076:25972709-25972909	180	2.52e-04	TGTATGGACT	TTTTTTTCCT	TCAAATTATA
chrIV-NC_003075:13023435-13023635	51	2.52e-04	GACAAAAATA	TCTCTCTCGT	TACCTCTCGC
chrIV-NC_003075:33765-33965	116	2.52e-04	GATAGTGTTT	TTTCTGTTGT	TTTTGTAAAG
chrI-NC_003070:25877584-25877784	11	2.52e-04	ATACATGAAG	TCTTTGTCTT	CTTACCAAAA
chrIII-NC_003074:2016186-2016386	174	2.52e-04	TTTAATGGGC	TCTTTTTTTC	ATAAACCCGT
chrII-NC_003071:6920409-6920609	17	2.78e-04	AAAACTCTTG	TTTTCCTTTC	AAAGATTTAG
chrV-NC_003076:9628962-9629162	143	3.02e-04	AGCAGGTTTC	TTTCTATTTC	CAGATAAAAA
chrV-NC_003076:16450886-16451086	112	3.02e-04	TAGATGGATA	TTTTCTTTCT	AATTATGGAT
chrV-NC_003076:10459004-10459204	150	3.02e-04	ACTTCGATTA	TTTCTATTTC	TGTTCATATT
chrIV-NC_003075:14118209-14118409	146	3.02e-04	ACGCATGCCA	TTTCTATTTC	CGGTTCCTGC
chrI-NC_003070:24732448-24732648	85	3.02e-04	ATGTCCTAAG	TTTTCTTTCT	ATTTCGATTC
chrII-NC_003071:18811073-18811273	138	3.02e-04	TACACATCTT	TTTCCCTCCC	ATAAATATCT
chrIII-NC_003074:10163215-10163415	39	3.02e-04	CAGAAACTGG	TTTTCTTTCT	ATTTTGGTAT
chrII-NC_003071:19491297-19491497	61	3.20e-04	CCACATTCGA	TTTTCTTTGT	GAGACGTGTG
chrIII-NC_003074:1976038-1976238	73	3.20e-04	AATTAGAAAG	TCTCTGTTCT	CCTCCTCCAC
chrV-NC_003076:5205507-5205707	34	3.67e-04	AGCTCTCTTA	TCTTTTTCGT	GGTCAGAAAT
chrIV-NC_003075:6752985-6753185	141	3.67e-04	TGAATATTTA	TTTTTATTTT	TGACAGCTAT
chrII-NC_003071:10628311-10628511	184	3.67e-04	AGGATTCAAA	TTTCTGTTCC	TTTCCT
chrIII-NC_003074:8213415-8213615	17	3.67e-04	AAAATATAAA	TTTTTATTTT	TTAAAATATT
chrV-NC_003076:4734829-4735029	4	3.96e-04	TTCG	TTTTTTTCCC	TCATGTAAAT
chrIV-NC_003075:6771910-6772110	9	3.96e-04	TAGTAAAAC	TCTTTGTCTC	GTAAACATTG
chrIV-NC_003075:6771834-6772034	85	3.96e-04	TTAGTAAAAC	TCTTTGTCTC	GTAAACATTG
chrI-NC_003070:11454805-11455005	86	3.96e-04	GGATGAGAGC	TCTTTGTCTC	TGCGTGTCAA
chrII-NC_003071:17189231-17189431	127	3.96e-04	TAACGTCAAT	TTTTTCTTGT	CCCATGAAAT
chrIII-NC_003074:4606158-4606358	11	3.96e-04	TAACTCTTCA	TTTTCATTTT	AATTAATTCG
chrIII-NC_003074:8943976-8944176	29	3.96e-04	AAGAGAATAG	TTTTTCTTGT	CCAAATCAAT
chrIII-NC_003074:2348858-2349058	125	3.96e-04	GTAACGTAGT	TCTCTCTCGC	GTGCATTGAA
chrV-NC_003076:24886947-24887147	64	4.20e-04	TTAGAGAAAA	TTTCTATTCT	AGTATTAGTC
chrIV-NC_003075:7349242-7349442	42	4.20e-04	GAAAATTATA	TTTTCCTTGT	CCATTTTCAA
chrIV-NC_003075:13685900-13686100	153	4.20e-04	ACTACTAGGG	TTTTTTTTCC	GGCACGTGTA
chrI-NC_003070:30249255-30249455	132	4.20e-04	CTTGTAACCG	TTTCTATCGT	TGACTTTGAC
chrV-NC_003076:448654-448854	84	4.66e-04	CACAATTAAA	TTTTTGTTGT	CCATACACGT
chrII-NC_003071:18786456-18786656	144	4.66e-04	CAAGTATATC	TCTTTATTTT	TACTACGCGA
chrII-NC_003071:11689161-11689361	70	4.66e-04	ATTAAATATA	TTTTTGTTGT	TCATTCCCAA
chrIII-NC_003074:22859396-22859596	145	4.66e-04	AATTATTGCT	TTTTCTTTGC	CAGTTAAAAC
chrI-NC_003070:28467619-28467819	134	4.83e-04	AAGTCAACGC	TCTTTCTTGT	ATTTTGTCTT
chrV-NC_003076:24953160-24953360	160	5.04e-04	ATTTCTTAAT	TTTTTATTTC	TATCTAATTT
chrIV-NC_003075:6906145-6906345	15	5.04e-04	TGGTCGATGC	TCTTTGTCCT	TACATCGGTC
chrI-NC_003070:8563015-8563215	135	5.04e-04	TCTGCTGCGA	TCTCCATCCT	CCTCATCCGA
chrI-NC_003070:6867963-6868163	154	5.04e-04	CTACTTCTTG	TCTCCATCCT	TTCCAACCGA
chrIV-NC_003075:11425880-11426080	58	5.24e-04	CTATCGACTT	TTTTCCTTCC	GTTAATCAAG
chrI-NC_003070:5018083-5018283	190	5.36e-04	GTAATCTATT	TTTTTGTCCC
chrIII-NC_003074:4732789-4732989	85	5.62e-04	AACCCTTCGG	TTTTCGTTCC	GGTTTTGATT

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:5216276-5216476	1.30e-05
chrIII-NC_003074:22859396-22859596	4.66e-04
chrIII-NC_003074:4732955-4733155	1.27e-04
chrIII-NC_003074:2348858-2349058	3.96e-04
chrIII-NC_003074:1976038-1976238	3.20e-04
chrIII-NC_003074:2016186-2016386	2.52e-04
chrIII-NC_003074:21448653-21448853	1.69e-04
chrIII-NC_003074:21969467-21969667	5.39e-05
chrIII-NC_003074:4732789-4732989	5.62e-04
chrIII-NC_003074:8213415-8213615	3.67e-04
chrIII-NC_003074:20251636-20251836	5.39e-05
chrIII-NC_003074:18763347-18763547	3.10e-05
chrIII-NC_003074:5216309-5216509	1.30e-05
chrIII-NC_003074:10163215-10163415	3.02e-04
chrIII-NC_003074:16301670-16301870	5.39e-05
chrIII-NC_003074:8943976-8944176	3.96e-04
chrIII-NC_003074:21153604-21153804	9.29e-05
chrIII-NC_003074:665060-665260	6.85e-05
chrIII-NC_003074:10094903-10095103	4.45e-05
chrIII-NC_003074:4606158-4606358	3.96e-04
chrIII-NC_003074:17223729-17223929	3.10e-05
chrIII-NC_003074:611194-611394	8.18e-05
chrIII-NC_003074:5236747-5236947	8.18e-05
chrIII-NC_003074:22141193-22141393	9.90e-06
chrIII-NC_003074:20988214-20988414	2.53e-05
chrIII-NC_003074:822690-822890	1.93e-04
chrIII-NC_003074:5236683-5236883	8.18e-05
chrII-NC_003071:7934198-7934398	3.06e-06
chrII-NC_003071:13036732-13036932	1.30e-05
chrII-NC_003071:7935107-7935307	2.10e-04
chrII-NC_003071:17508903-17509103	9.29e-05
chrII-NC_003071:19114215-19114415	1.30e-05
chrII-NC_003071:17189231-17189431	3.96e-04
chrII-NC_003071:12849576-12849776	1.69e-04
chrII-NC_003071:8760319-8760519	9.90e-06
chrII-NC_003071:16111201-16111401	3.10e-05
chrII-NC_003071:18188065-18188265	6.85e-05
chrII-NC_003071:11689161-11689361	4.66e-04
chrII-NC_003071:19491297-19491497	3.20e-04
chrII-NC_003071:10628311-10628511	3.67e-04
chrII-NC_003071:18786456-18786656	4.66e-04
chrII-NC_003071:8813586-8813786	1.30e-05
chrII-NC_003071:15099380-15099580	1.27e-04
chrII-NC_003071:6920409-6920609	2.78e-04
chrII-NC_003071:14450955-14451155	1.69e-04
chrII-NC_003071:17819771-17819971	2.53e-05
chrII-NC_003071:17975979-17976179	2.10e-04
chrII-NC_003071:18749207-18749407	1.44e-04
chrII-NC_003071:19015799-19015999	9.90e-06
chrII-NC_003071:8544091-8544291	2.26e-04
chrII-NC_003071:18811073-18811273	3.02e-04
chrII-NC_003071:9580055-9580255	4.45e-05
chrII-NC_003071:14193902-14194102	2.53e-05
chrII-NC_003071:13036795-13036995	1.30e-05
chrI-NC_003070:22343054-22343254	8.18e-05
chrI-NC_003070:17253659-17253859	1.93e-04
chrI-NC_003070:6867963-6868163	5.04e-04
chrI-NC_003070:7930400-7930600	1.27e-04
chrI-NC_003070:5137983-5138183	5.39e-05
chrI-NC_003070:24331613-24331813	1.30e-05
chrI-NC_003070:24732448-24732648	3.02e-04
chrI-NC_003070:28955713-28955913	4.45e-05
chrI-NC_003070:24760580-24760780	6.85e-05
chrI-NC_003070:27294385-27294585	1.68e-05
chrI-NC_003070:5018083-5018283	5.36e-04
chrI-NC_003070:1143820-1144020	4.45e-05
chrI-NC_003070:25743975-25744175	1.27e-04
chrI-NC_003070:3108015-3108215	1.27e-04
chrI-NC_003070:6746757-6746957	8.18e-05
chrI-NC_003070:11454805-11455005	3.96e-04
chrI-NC_003070:26038263-26038463	1.69e-04
chrI-NC_003070:11472862-11473062	1.30e-05
chrI-NC_003070:28467619-28467819	4.83e-04
chrI-NC_003070:23734604-23734804	1.30e-05
chrI-NC_003070:30249255-30249455	4.20e-04
chrI-NC_003070:23238411-23238611	9.90e-06
chrI-NC_003070:8563015-8563215	5.04e-04
chrI-NC_003070:25877584-25877784	2.52e-04
chrI-NC_003070:21517777-21517977	1.30e-05
chrI-NC_003070:7930555-7930755	1.69e-04
chrI-NC_003070:22512251-22512451	6.85e-05
chrI-NC_003070:8596542-8596742	9.90e-06
chrI-NC_003070:4132322-4132522	9.29e-05
chrI-NC_003070:26097575-26097775	9.90e-06
chrI-NC_003070:6174672-6174872	4.45e-05
chrI-NC_003070:1143756-1143956	4.45e-05
chrI-NC_003070:25320229-25320429	1.30e-05
chrI-NC_003070:28292956-28293156	1.27e-04
chrI-NC_003070:28315795-28315995	5.39e-05
chrIV-NC_003075:13685900-13686100	4.20e-04
chrIV-NC_003075:11604485-11604685	1.08e-04
chrIV-NC_003075:33765-33965	2.52e-04
chrIV-NC_003075:17535190-17535390	1.27e-04
chrIV-NC_003075:13475395-13475595	1.44e-04
chrIV-NC_003075:13023435-13023635	2.52e-04
chrIV-NC_003075:6752985-6753185	3.67e-04
chrIV-NC_003075:14118209-14118409	3.02e-04
chrIV-NC_003075:18318587-18318787	5.39e-05
chrIV-NC_003075:11425880-11426080	5.24e-04
chrIV-NC_003075:14266719-14266919	8.18e-05
chrIV-NC_003075:16613081-16613281	2.26e-04
chrIV-NC_003075:16256073-16256273	2.26e-04
chrIV-NC_003075:12769653-12769853	6.85e-05
chrIV-NC_003075:2661596-2661796	1.08e-04
chrIV-NC_003075:8203258-8203458	9.90e-06
chrIV-NC_003075:13854216-13854416	4.45e-05
chrIV-NC_003075:17048860-17049060	9.90e-06
chrIV-NC_003075:7349242-7349442	4.20e-04
chrIV-NC_003075:10600009-10600209	1.27e-04
chrIV-NC_003075:13023617-13023817	4.45e-05
chrIV-NC_003075:6771834-6772034	3.96e-04
chrIV-NC_003075:17736542-17736742	5.39e-05
chrIV-NC_003075:17798664-17798864	1.93e-04
chrIV-NC_003075:6906145-6906345	5.04e-04
chrIV-NC_003075:6771910-6772110	3.96e-04
chrIV-NC_003075:14331411-14331611	1.93e-04
chrIV-NC_003075:13016235-13016435	1.08e-04
chrIV-NC_003075:17334368-17334568	9.90e-06
chrIV-NC_003075:9443322-9443522	1.08e-04
chrIV-NC_003075:7369585-7369785	2.53e-05
chrV-NC_003076:22649608-22649808	1.93e-04
chrV-NC_003076:5177754-5177954	1.68e-05
chrV-NC_003076:7266265-7266465	9.90e-06
chrV-NC_003076:10459004-10459204	3.02e-04
chrV-NC_003076:7265855-7266055	3.06e-06
chrV-NC_003076:8359800-8360000	1.44e-04
chrV-NC_003076:24935013-24935213	1.27e-04
chrV-NC_003076:20781642-20781842	1.27e-04
chrV-NC_003076:7673076-7673276	3.06e-06
chrV-NC_003076:24886947-24887147	4.20e-04
chrV-NC_003076:900190-900390	3.06e-06
chrV-NC_003076:26807915-26808115	1.30e-05
chrV-NC_003076:25972709-25972909	2.52e-04
chrV-NC_003076:9480398-9480598	1.44e-04
chrV-NC_003076:16451031-16451231	1.27e-04
chrV-NC_003076:24239588-24239788	5.39e-05
chrV-NC_003076:24953160-24953360	5.04e-04
chrV-NC_003076:7960250-7960450	1.30e-05
chrV-NC_003076:10356668-10356868	6.85e-05
chrV-NC_003076:26155-26355	4.45e-05
chrV-NC_003076:21437588-21437788	6.85e-05
chrV-NC_003076:4734829-4735029	3.96e-04
chrV-NC_003076:9515557-9515757	6.85e-05
chrV-NC_003076:16450886-16451086	3.02e-04
chrV-NC_003076:5011856-5012056	1.08e-04
chrV-NC_003076:756609-756809	6.85e-05
chrV-NC_003076:26805534-26805734	5.39e-05
chrV-NC_003076:5205507-5205707	3.67e-04
chrV-NC_003076:15997367-15997567	6.85e-05
chrV-NC_003076:9628962-9629162	3.02e-04
chrV-NC_003076:448654-448854	4.66e-04
chrV-NC_003076:5962181-5962381	1.30e-05
chrV-NC_003076:7833316-7833516	2.10e-04
chrV-NC_003076:973984-974184	1.27e-04
chrV-NC_003076:25158624-25158824	3.06e-06
		0 50 100 150 200

Time 193.9 secs.

Motif 4

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Summary

Sequence Logo

E-value	2.2e-022
Width	8
Sites	124

Standard Reverse Complement

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Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[TG]GG[TGA]CC[AC][ATC]

Further Analysis

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:23773879-23774079	170	4.75e-06	ACGGTGGATA	TGGGCCAC	GAATCTGGTT
chrI-NC_003070:6560769-6560969	180	4.75e-06	TTGATTGAGA	TGGGCCAC	ATGAGAATCA
chrI-NC_003070:18321436-18321636	48	4.75e-06	GGATCAAAGA	TGGGCCAC	GATTCGTCAA
chrIII-NC_003074:1175197-1175397	163	4.75e-06	AAACACAACT	TGGGCCAC	CACTACTACT
chrV-NC_003076:16451031-16451231	123	2.30e-05	CACTAGCAAA	TGGGCCAA	GGTTAGTAGG
chrV-NC_003076:18215713-18215913	145	2.30e-05	TTTTTCCATG	TGGTCCAC	TTATTTATCC
chrI-NC_003070:1953781-1953981	39	2.30e-05	GCCCCAAAAG	TGGTCCAC	ACATCGCATC
chrI-NC_003070:9763126-9763326	98	2.30e-05	AACTTCGTTA	TGGTCCAC	TTACGGCCGG
chrI-NC_003070:1773727-1773927	144	2.30e-05	CGAATGAATA	TGGGCCAA	CAAAAAGCCA
chrV-NC_003076:24476843-24477043	86	4.02e-05	ATGGGCCTAG	TGGGCCCA	ATGATCACGT
chrV-NC_003076:9515557-9515757	132	4.02e-05	ACGTCCAGTC	TGGTCCCC	ACATTTTTCT
chrIV-NC_003075:14331411-14331611	55	4.02e-05	GCCCAACATG	TGGGCCCA	ACGGTGTCTC
chrIV-NC_003075:8203258-8203458	45	4.02e-05	TTTTTAACAT	TGGTCCCC	AATATGTTTT
chrIV-NC_003075:14266719-14266919	128	4.02e-05	TAGAAATACA	TGGGCCCA	ATTTTCTTTT
chrI-NC_003070:4132322-4132522	73	4.02e-05	GTGAGTAATT	TGGGCCCA	CTCCAATATA
chrI-NC_003070:22512251-22512451	105	4.02e-05	TATTATTTAG	TGGTCCCC	ATTCAATTAT
chrI-NC_003070:18942515-18942715	171	4.02e-05	AACAAAGACA	TGGTCCCC	AACAATAATC
chrII-NC_003071:19100983-19101183	160	4.02e-05	ATTTATCATA	TGGTCCCC	TCGTTTTATA
chrIII-NC_003074:20251636-20251836	112	4.02e-05	GTGGCAAATA	TGGGCCCA	CAGCTATAGA
chrIII-NC_003074:1395996-1396196	13	4.02e-05	CAAAGAAAGC	TGGGCCAT	GTCTGCATTT
chrIII-NC_003074:19276369-19276569	49	4.02e-05	AAAGAGAAAA	TGGGCCCA	ATCTTAAGAC
chrV-NC_003076:973984-974184	168	5.72e-05	AATTTGGAAC	TGGGCCCT	CACAAATCAC
chrV-NC_003076:266618-266818	38	5.72e-05	GGACCAGTAA	TGGGCCCT	ACTGAGTCAC
chrV-NC_003076:24239588-24239788	120	5.72e-05	TAAAGAGTGT	TGGTCCAA	GATGATTTTT
chrV-NC_003076:24886947-24887147	0	5.72e-05		TGGTCCAA	TAATGTTTCT
chrIV-NC_003075:7369585-7369785	118	5.72e-05	GGGCCTTAGA	TGGGCCCT	TCTTGCTAAA
chrIV-NC_003075:13685900-13686100	87	5.72e-05	TTACGGATAG	TGGTCCAA	CTGACACGTG
chrI-NC_003070:25736387-25736587	31	5.72e-05	GTCTATATAA	TGGTCCAA	TTTCAAGATC
chrI-NC_003070:1880787-1880987	1	5.72e-05	G	TGGTCCAA	TGATTTTGTA
chrII-NC_003071:17975979-17976179	151	5.72e-05	TTTGGCTTTT	TGGTCCAA	TGTTTCTTTC
chrIII-NC_003074:12453857-12454057	166	5.72e-05	CCATTTTTAT	TGGTCCAA	CCCAACTACG
chrIII-NC_003074:4606158-4606358	125	5.72e-05	AAATATCCCT	TGGTCCAA	AGGTCTTTCC
chrV-NC_003076:2561208-2561408	107	8.47e-05	ATAAAATGTA	TGGACCAC	ATTGTTTCCT
chrIV-NC_003075:17409244-17409444	172	8.47e-05	GAAAATCTCG	TGGTCCAT	CTAAAAATGT
chrIV-NC_003075:10600009-10600209	85	8.47e-05	GGGAATCAAA	TGGTCCAT	ACCCACGTGC
chrIV-NC_003075:8100451-8100651	12	8.47e-05	ATAACAAATC	TGGTCCAT	GTGTCCACGT
chrI-NC_003070:26164485-26164685	14	8.47e-05	ACGTGTGGAT	TGGTCCAT	CACAACTCAC
chrI-NC_003070:28292956-28293156	174	8.47e-05	TAGATGGCGG	TGGTCCAT	TTAAAATACT
chrI-NC_003070:26043093-26043293	127	8.47e-05	GTCTCTTTAT	TGGTCCAT	GATTAGATTC
chrI-NC_003070:26164321-26164521	178	8.47e-05	ACGTGTGGAT	TGGTCCAT	CACAACTCAC
chrI-NC_003070:72146-72346	48	8.47e-05	ACTTTCTCGA	TGGTCCAT	GGGCCTTAGA
chrII-NC_003071:16505491-16505691	31	8.47e-05	GCACAAGCCC	TGGACCAC	CAACATTCTC
chrII-NC_003071:12946397-12946597	192	8.47e-05	TTTCAGTATT	TGGACCAC
chrII-NC_003071:11941166-11941366	143	8.47e-05	TCAATGCTAA	TGGACCAC	ACACATATAT
chrII-NC_003071:17508903-17509103	58	8.47e-05	GAAGTGAAAG	TGGTCCAT	GATTACAAGT
chrIII-NC_003074:822690-822890	18	8.47e-05	TATATAGGTA	TGGTCCCA	ATCGCAGCTA
chrIII-NC_003074:9717966-9718166	140	8.47e-05	TGTCTTTTAT	TGGTCCAT	ACTATTTTGG
chrIII-NC_003074:8943216-8943416	158	8.47e-05	AAATCTAAAT	TGGACCAC	CTGATGTCTC
chrV-NC_003076:3857021-3857221	132	1.00e-04	GATAGGAGTG	TGGTCCCT	TGTTTGTATC
chrIV-NC_003075:17334368-17334568	127	1.00e-04	GCACGAGCTG	TGGTCCCT	TCCCCGTTGT
chrIV-NC_003075:18472024-18472224	25	1.00e-04	CACTGGTTGA	TGGTCCCT	ATTTGTCCAA
chrIV-NC_003075:14141422-14141622	58	1.14e-04	GAAAGATGGA	TGGACCAA	AGGACGTGTG
chrII-NC_003071:12185823-12186023	52	1.14e-04	TGTGGTCACA	TGGACCAA	AACGCGTAAT
chrV-NC_003076:7833316-7833516	57	1.43e-04	GAAATAGCCT	TGGACCCA	ACTCTTCCTC
chrV-NC_003076:24239953-24240153	111	1.43e-04	CGGTACGTTA	GGGTCCAC	AAGGAAGAAC
chrV-NC_003076:7266265-7266465	192	1.43e-04	AAGTACAGTG	GGGTCCAC
chrIV-NC_003075:17319773-17319973	148	1.43e-04	GACGAAACGA	TGGACCAT	GTGAGGTTCA
chrIV-NC_003075:14863096-14863296	1	1.43e-04	A	GGGGCCAA	TCTTTCCTGA
chrI-NC_003070:8598740-8598940	91	1.43e-04	TAGACGGACA	GGGTCCAC	GTCAAGACGT
chrI-NC_003070:4082490-4082690	115	1.43e-04	ATGTACTTTA	GGGTCCAC	ATTCACGAGG
chrI-NC_003070:24760580-24760780	129	1.43e-04	TGGAAAGTAT	TGGACCCA	AACTGGAGAC
chrI-NC_003070:23126552-23126752	57	1.43e-04	GGCTGGTATG	TGGACCCA	CTTTCAAATG
chrII-NC_003071:14193902-14194102	65	1.43e-04	TGACAGCTAC	GGGTCCAC	TTTCTCTTTT
chrII-NC_003071:10628311-10628511	70	1.43e-04	AAATCGAGTA	TGGACCCA	AAGCTCTCTA
chrIII-NC_003074:20121130-20121330	71	1.43e-04	AAGAAGTAAA	GGGTCCAC	TTGAGTTACT
chrIII-NC_003074:9373252-9373452	9	1.43e-04	AATAAAATT	TGGACCCA	GAGGTGAGAA
chrIII-NC_003074:7503344-7503544	190	1.43e-04	AGCTCCGGTC	TGGACCAT	TT
chrIV-NC_003075:17798664-17798864	106	1.77e-04	ATCAAATTGT	GGGTCCAA	TTGAATATAA
chrII-NC_003071:641561-641761	158	1.77e-04	ACGGTGCTGG	TGGGCCTC	TTGTCTTGTT
chrIII-NC_003074:2011442-2011642	15	1.77e-04	ACGCTCAAAC	TGGGCCTC	ATCTTTGTAG
chrV-NC_003076:10356668-10356868	104	1.99e-04	ATTTGGAAGT	GGGTCCCA	TAAAAAATAT
chrIV-NC_003075:17048860-17049060	108	1.99e-04	CGTGCTCTAG	TGGGCCAG	AATATCATAA
chrI-NC_003070:7270500-7270700	168	1.99e-04	GACGGTTCCT	GGGTCCCA	CATGCCATGA
chrI-NC_003070:21043046-21043246	171	1.99e-04	CGACCATATC	GGGTCCCA	CACTTCCAAT
chrI-NC_003070:25877584-25877784	122	1.99e-04	GATGAGGTTT	GGGTCCAT	ACTTAACAGT
chrII-NC_003071:12941156-12941356	146	1.99e-04	AAGCAAGGCA	GGGTCCCA	CGAGTGGTGA
chrII-NC_003071:19227465-19227665	164	1.99e-04	CCATGCACGC	GGGACCAC	GTACGCGTGA
chrIII-NC_003074:3885203-3885403	18	1.99e-04	GCAAGAGTCT	GGGACCAC	GAGAGACTCT
chrIII-NC_003074:20478277-20478477	27	1.99e-04	AACTTTATCC	GGGTCCAT	TCATAGAGTG
chrI-NC_003070:1953904-1954104	155	2.25e-04	CAAATCCAAT	TGGTCCTC	AAGTACGTTG
chrI-NC_003070:5018083-5018283	84	2.25e-04	ATTTCCAAAT	GGGTCCCT	CCGGCATGCC
chrII-NC_003071:18423231-18423431	169	2.25e-04	GCAGCTGTCG	TGGGCCCG	GGAGACAAGG
chrII-NC_003071:17819771-17819971	165	2.25e-04	AAAAATTGGA	TGGTCCTC	CTTCAATGCT
chrII-NC_003071:12849576-12849776	108	2.25e-04	CGTTTTTAAA	TGGGCCTA	TATATTAAAT
chrIII-NC_003074:17223729-17223929	33	2.25e-04	CCAATAATTA	TGGGCCTA	GTCCATTTAC
chrV-NC_003076:20014837-20015037	55	2.48e-04	TAAAAGACGA	TGGGCCTT	AACAAGAAAA
chrV-NC_003076:23840693-23840893	84	2.48e-04	GAGACAAATG	GGGACCAA	CTAGTTGAGG
chrV-NC_003076:23762535-23762735	140	2.48e-04	AAATTACAAA	TGGGCCTT	ATCCAAACTA
chrIV-NC_003075:1494888-1495088	129	2.48e-04	TTTAAGCGGT	GGGACCAA	AACCTGCAAA
chrIV-NC_003075:33765-33965	186	2.48e-04	ACACCAACGG	TGGGCCTT	TTTTTC
chrI-NC_003070:16713723-16713923	169	2.48e-04	TAGAATTCTC	TGGTCCAG	CCCTTGATCC
chrI-NC_003070:28804880-28805080	15	2.48e-04	TTTAATTAAA	TGGGCCTT	TTATCTGCCC
chrI-NC_003070:29121010-29121210	108	2.48e-04	AAAATTAGTA	GGGACCAA	AACTAAACAA
chrI-NC_003070:28953600-28953800	65	2.48e-04	ATCATAGAAA	TGGGCCTT	TATGTCACCA
chrII-NC_003071:14851801-14852001	144	2.48e-04	TAATTTCCAT	TGGGCCTT	GTGCTTTGTG
chrIII-NC_003074:5216309-5216509	53	2.48e-04	CAAGCTTACA	TGGGCCTT	AATGACACGC
chrIII-NC_003074:19837055-19837255	119	2.48e-04	GTACTTTTAT	TGGGCCTT	ATATCAACTC
chrIII-NC_003074:21969467-21969667	53	2.48e-04	GAAAAAATGA	GGGACCAA	CGGTCATATT
chrIII-NC_003074:2016186-2016386	158	2.48e-04	GCCGTTTCAA	TGGGCCTT	TAATGGGCTC
chrIII-NC_003074:5216276-5216476	86	2.48e-04	CAAGCTTACA	TGGGCCTT	AATGACACGC
chrV-NC_003076:25900220-25900420	158	2.77e-04	AATTGAAAGA	GGGACCAT	GAGAGCACAT
chrIV-NC_003075:9443322-9443522	145	2.77e-04	GTCATCCTGT	TGGTCCCG	CTTTATTAAC
chrIV-NC_003075:13017928-13018128	143	2.77e-04	GCTCTCTTGT	GGGACCCA	TATTTCTGTT
chrI-NC_003070:26097575-26097775	103	2.77e-04	GACCCAGACT	GGGACCCA	AACCCAGACC
chrI-NC_003070:22877423-22877623	64	2.77e-04	TTACTTTACG	GGGACCAT	GCACTATACT
chrI-NC_003070:364212-364412	20	2.77e-04	CTAAAAATAG	GGGACCCA	CGCCATTACC
chrIII-NC_003074:4340381-4340581	104	2.77e-04	AATCATACGT	GGGACCCA	CATGACATAA
chrV-NC_003076:24240069-24240269	32	3.02e-04	CGATGAGTAT	GGGACCCT	GGTGGTGACA
chrIV-NC_003075:272143-272343	130	3.02e-04	GGGCTAATTT	TGGTCCTT	TTGGAAAGAT
chrI-NC_003070:6899616-6899816	187	3.02e-04	GGAAAAGCTG	TGGACCTC	TCTGC
chrIII-NC_003074:11386965-11387165	18	3.02e-04	GATCAGATGG	TGGACCTC	ACAGAGATTT
chrV-NC_003076:588900-589100	157	3.17e-04	ATTTTCACTT	TGGACCAG	TGTTATTTTC
chrI-NC_003070:24732448-24732648	55	3.17e-04	GAGTTACTTG	TGGACCAG	TGTGAGCCAA
chrI-NC_003070:5137983-5138183	122	3.17e-04	TGTCTATTAG	TGGCCCAC	TCTAAAATCT
chrII-NC_003071:17796012-17796212	148	3.17e-04	TGGATATGAT	TGGCCCAC	CACTCAAAAA
chrIV-NC_003075:13023617-13023817	16	3.40e-04	AGTGACGTAT	GGGGCCAG	TGAAGGCTGG
chrI-NC_003070:6311195-6311395	141	3.40e-04	CAAACGGGTT	TGGACCCG	AAATAGATCC
chrII-NC_003071:12173602-12173802	55	3.40e-04	TTTGTTACGG	TGGACCTA	ATGATTTTAT
chrIV-NC_003075:6752985-6753185	86	3.94e-04	TTCTAAGAAG	TGGCCCAT	TTCATCACGT
chrIV-NC_003075:12379981-12380181	164	3.94e-04	AAGATGGTCA	TGGCCCAT	AGATGTATGC
chrII-NC_003071:13036732-13036932	11	3.94e-04	CAGATTTAGT	TGGCCCAT	TAATGTACAG
chrV-NC_003076:23391751-23391951	180	4.26e-04	TAAACAAATA	TGGGCCTG	TATGGGCCGA
chrIV-NC_003075:17397611-17397811	43	4.26e-04	ATAGTTTTTG	TGGGCCTG	TTTTTTTGGA
chrIV-NC_003075:15231300-15231500	16	4.54e-04	AATTAGAGAA	GGGCCCCC	AAATGTTTGG

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:5216276-5216476	2.48e-04
chrIII-NC_003074:19276369-19276569	4.02e-05
chrIII-NC_003074:1395996-1396196	4.02e-05
chrIII-NC_003074:2016186-2016386	2.48e-04
chrIII-NC_003074:7503344-7503544	1.43e-04
chrIII-NC_003074:4340381-4340581	2.77e-04
chrIII-NC_003074:9373252-9373452	1.43e-04
chrIII-NC_003074:21969467-21969667	2.48e-04
chrIII-NC_003074:20478277-20478477	1.99e-04
chrIII-NC_003074:11386965-11387165	3.02e-04
chrIII-NC_003074:20251636-20251836	4.02e-05
chrIII-NC_003074:19837055-19837255	2.48e-04
chrIII-NC_003074:5216309-5216509	2.48e-04
chrIII-NC_003074:20121130-20121330	1.43e-04
chrIII-NC_003074:2011442-2011642	1.77e-04
chrIII-NC_003074:4606158-4606358	5.72e-05
chrIII-NC_003074:17223729-17223929	2.25e-04
chrIII-NC_003074:1175197-1175397	4.75e-06
chrIII-NC_003074:8943216-8943416	8.47e-05
chrIII-NC_003074:9717966-9718166	8.47e-05
chrIII-NC_003074:12453857-12454057	5.72e-05
chrIII-NC_003074:3885203-3885403	1.99e-04
chrIII-NC_003074:822690-822890	8.47e-05
chrII-NC_003071:13036732-13036932	3.94e-04
chrII-NC_003071:17508903-17509103	8.47e-05
chrII-NC_003071:12849576-12849776	2.25e-04
chrII-NC_003071:19100983-19101183	4.02e-05
chrII-NC_003071:12173602-12173802	3.40e-04
chrII-NC_003071:19227465-19227665	1.99e-04
chrII-NC_003071:10628311-10628511	1.43e-04
chrII-NC_003071:14851801-14852001	2.48e-04
chrII-NC_003071:11941166-11941366	8.47e-05
chrII-NC_003071:641561-641761	1.77e-04
chrII-NC_003071:12946397-12946597	8.47e-05
chrII-NC_003071:17819771-17819971	2.25e-04
chrII-NC_003071:17975979-17976179	5.72e-05
chrII-NC_003071:12941156-12941356	1.99e-04
chrII-NC_003071:16505491-16505691	8.47e-05
chrII-NC_003071:12185823-12186023	1.14e-04
chrII-NC_003071:14193902-14194102	1.43e-04
chrII-NC_003071:17796012-17796212	3.17e-04
chrII-NC_003071:18423231-18423431	2.25e-04
chrI-NC_003070:364212-364412	2.77e-04
chrI-NC_003070:72146-72346	8.47e-05
chrI-NC_003070:23126552-23126752	1.43e-04
chrI-NC_003070:28953600-28953800	2.48e-04
chrI-NC_003070:18321436-18321636	4.75e-06
chrI-NC_003070:26164321-26164521	8.47e-05
chrI-NC_003070:5137983-5138183	3.17e-04
chrI-NC_003070:24732448-24732648	3.17e-04
chrI-NC_003070:26043093-26043293	8.47e-05
chrI-NC_003070:24760580-24760780	1.43e-04
chrI-NC_003070:29121010-29121210	2.48e-04
chrI-NC_003070:5018083-5018283	2.25e-04
chrI-NC_003070:18942515-18942715	4.02e-05
chrI-NC_003070:4082490-4082690	1.43e-04
chrI-NC_003070:28804880-28805080	2.48e-04
chrI-NC_003070:22877423-22877623	2.77e-04
chrI-NC_003070:1880787-1880987	5.72e-05
chrI-NC_003070:6899616-6899816	3.02e-04
chrI-NC_003070:8598740-8598940	1.43e-04
chrI-NC_003070:6311195-6311395	3.40e-04
chrI-NC_003070:1773727-1773927	2.30e-05
chrI-NC_003070:6560769-6560969	4.75e-06
chrI-NC_003070:25877584-25877784	1.99e-04
chrI-NC_003070:21043046-21043246	1.99e-04
chrI-NC_003070:16713723-16713923	2.48e-04
chrI-NC_003070:25736387-25736587	5.72e-05
chrI-NC_003070:22512251-22512451	4.02e-05
chrI-NC_003070:4132322-4132522	4.02e-05
chrI-NC_003070:26097575-26097775	2.77e-04
chrI-NC_003070:1953904-1954104	2.25e-04
chrI-NC_003070:9763126-9763326	2.30e-05
chrI-NC_003070:7270500-7270700	1.99e-04
chrI-NC_003070:28292956-28293156	8.47e-05
chrI-NC_003070:26164485-26164685	8.47e-05
chrI-NC_003070:1953781-1953981	2.30e-05
chrIV-NC_003075:13685900-13686100	5.72e-05
chrIV-NC_003075:13017928-13018128	2.77e-04
chrIV-NC_003075:12379981-12380181	3.94e-04
chrIV-NC_003075:33765-33965	2.48e-04
chrIV-NC_003075:14141422-14141622	1.14e-04
chrIV-NC_003075:14863096-14863296	1.43e-04
chrIV-NC_003075:6752985-6753185	3.94e-04
chrIV-NC_003075:272143-272343	3.02e-04
chrIV-NC_003075:14266719-14266919	4.02e-05
chrIV-NC_003075:17397611-17397811	4.26e-04
chrIV-NC_003075:17319773-17319973	1.43e-04
chrIV-NC_003075:8100451-8100651	8.47e-05
chrIV-NC_003075:8203258-8203458	4.02e-05
chrIV-NC_003075:17048860-17049060	1.99e-04
chrIV-NC_003075:18472024-18472224	1.00e-04
chrIV-NC_003075:1494888-1495088	2.48e-04
chrIV-NC_003075:10600009-10600209	8.47e-05
chrIV-NC_003075:13023617-13023817	3.40e-04
chrIV-NC_003075:17798664-17798864	1.77e-04
chrIV-NC_003075:17409244-17409444	8.47e-05
chrIV-NC_003075:14331411-14331611	4.02e-05
chrIV-NC_003075:15231300-15231500	4.54e-04
chrIV-NC_003075:17334368-17334568	1.00e-04
chrIV-NC_003075:9443322-9443522	2.77e-04
chrIV-NC_003075:7369585-7369785	5.72e-05
chrV-NC_003076:18215713-18215913	2.30e-05
chrV-NC_003076:7266265-7266465	1.43e-04
chrV-NC_003076:588900-589100	3.17e-04
chrV-NC_003076:23762535-23762735	2.48e-04
chrV-NC_003076:23840693-23840893	2.48e-04
chrV-NC_003076:24886947-24887147	5.72e-05
chrV-NC_003076:16451031-16451231	2.30e-05
chrV-NC_003076:25900220-25900420	2.77e-04
chrV-NC_003076:24239588-24239788	5.72e-05
chrV-NC_003076:23773879-23774079	4.75e-06
chrV-NC_003076:20014837-20015037	2.48e-04
chrV-NC_003076:23391751-23391951	4.26e-04
chrV-NC_003076:10356668-10356868	1.99e-04
chrV-NC_003076:24240069-24240269	3.02e-04
chrV-NC_003076:9515557-9515757	4.02e-05
chrV-NC_003076:24239953-24240153	1.43e-04
chrV-NC_003076:2561208-2561408	8.47e-05
chrV-NC_003076:7833316-7833516	1.43e-04
chrV-NC_003076:266618-266818	5.72e-05
chrV-NC_003076:973984-974184	5.72e-05
chrV-NC_003076:3857021-3857221	1.00e-04
chrV-NC_003076:24476843-24477043	4.02e-05
		0 50 100 150 200

Time 254.2 secs.

Motif 5

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Summary

Sequence Logo

E-value	2.6e-002
Width	8
Sites	22

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

[ATG][GA]CGCGTG

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrI-NC_003070:8596542-8596742	34	2.97e-06	AGGTGGAGAT	GGCGCGTG	TGCGATGAGT
chrI-NC_003070:23734604-23734804	62	2.97e-06	GTTTGTGTAT	GGCGCGTG	TGGTATATCG
chrIII-NC_003074:20988214-20988414	98	2.97e-06	CACCCACTTG	GGCGCGTG	TATTTCACGC
chrIII-NC_003074:21448653-21448853	112	2.97e-06	CCCCCTTTTT	GGCGCGTG	CTTTCACATT
chrV-NC_003076:4734829-4735029	94	7.72e-06	AATTGCAAGG	AGCGCGTG	GAAACGGATC
chrV-NC_003076:24953160-24953360	75	7.72e-06	TGAAGAAACA	AGCGCGTG	ACGAAAGAGA
chrV-NC_003076:26786389-26786589	67	7.72e-06	TCTTCAGAGA	AGCGCGTG	GAGGTTCTAA
chrI-NC_003070:4548671-4548871	30	7.72e-06	GCTGGATTTA	AGCGCGTG	AACTCCACCT
chrI-NC_003070:28804880-28805080	163	7.72e-06	ACACAAAAAG	AGCGCGTG	GTTTGACTTA
chrI-NC_003070:23286838-23287038	37	7.72e-06	GCATAAGGTA	AGCGCGTG	TTTGTAACAT
chrI-NC_003070:364212-364412	150	7.72e-06	TAGAGATAGC	AGCGCGTG	AGGTAGAGAA
chrIII-NC_003074:2011442-2011642	97	7.72e-06	CTCAATTTAG	AGCGCGTG	GGTATGTTTA
chrV-NC_003076:26155-26355	86	1.25e-05	GATTATAACA	TGCGCGTG	GGAGGCACGT
chrV-NC_003076:10459004-10459204	33	1.25e-05	CCACACGGGT	TGCGCGTG	AGAAACCACG
chrII-NC_003071:14193902-14194102	113	1.25e-05	TTCTTTTACT	TGCGCGTG	AACTTTCAAA
chrII-NC_003071:8760319-8760519	57	1.25e-05	CGGTTTCGTA	TGCGCGTG	GTGGCCACGC
chrV-NC_003076:7960250-7960450	105	1.73e-05	ATGTTACACC	GACGCGTG	GTCAATCTCT
chrIII-NC_003074:8943216-8943416	185	1.73e-05	CTCACACGAG	GACGCGTG	GTTATAC
chrI-NC_003070:21133615-21133815	156	2.49e-05	GGCCATTGCT	AACGCGTG	GCTTGGACGT
chrV-NC_003076:18358999-18359199	94	3.25e-05	ATTATTTGTC	TACGCGTG	TCTCTTTGAA
chrII-NC_003071:14851801-14852001	90	3.25e-05	ATTGACGAGA	TACGCGTG	ACAATGTCCA
chrII-NC_003071:19227465-19227665	173	3.25e-05	CGGGACCACG	TACGCGTG	ATAAAGTCTT

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:21448653-21448853	2.97e-06
chrIII-NC_003074:2011442-2011642	7.72e-06
chrIII-NC_003074:8943216-8943416	1.73e-05
chrIII-NC_003074:20988214-20988414	2.97e-06
chrII-NC_003071:8760319-8760519	1.25e-05
chrII-NC_003071:19227465-19227665	3.25e-05
chrII-NC_003071:14851801-14852001	3.25e-05
chrII-NC_003071:14193902-14194102	1.25e-05
chrI-NC_003070:364212-364412	7.72e-06
chrI-NC_003070:23286838-23287038	7.72e-06
chrI-NC_003070:28804880-28805080	7.72e-06
chrI-NC_003070:4548671-4548871	7.72e-06
chrI-NC_003070:23734604-23734804	2.97e-06
chrI-NC_003070:8596542-8596742	2.97e-06
chrI-NC_003070:21133615-21133815	2.49e-05
chrV-NC_003076:10459004-10459204	1.25e-05
chrV-NC_003076:26786389-26786589	7.72e-06
chrV-NC_003076:24953160-24953360	7.72e-06
chrV-NC_003076:7960250-7960450	1.73e-05
chrV-NC_003076:18358999-18359199	3.25e-05
chrV-NC_003076:26155-26355	1.25e-05
chrV-NC_003076:4734829-4735029	7.72e-06
		0 50 100 150 200

Time 312.9 secs.

Motif 6

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Summary

Sequence Logo

E-value	1.9e+001
Width	10
Sites	53

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

AAA[AT]T[AG]G[AT]AA

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:24239588-24239788	81	7.61e-06	TGTCTTGACA	AAAATAGAAA	CATTTGTGGT
chrI-NC_003070:16713584-16713784	105	7.61e-06	AACAATTCTA	AAAATGGAAA	GAGTCTTTGG
chrI-NC_003070:29406817-29407017	88	7.61e-06	TCCAAGTAGG	AAAATAGAAA	AGTGAGATAG
chrI-NC_003070:29121010-29121210	80	7.61e-06	TGTGTGCACA	AAAATAGAAA	TAATGGGCAA
chrI-NC_003070:24331613-24331813	170	7.61e-06	CTTCTTTTTT	AAAATAGAAA	TTATTTTCCT
chrIII-NC_003074:22141193-22141393	66	7.61e-06	TCAACGAACT	AAAATAGAAA	TATACTACTA
chrIII-NC_003074:4606158-4606358	88	7.61e-06	ATGAGTGACT	AAAATGGAAA	TTTATGCACT
chrIII-NC_003074:665060-665260	37	7.61e-06	CTCGACACCG	AAAATAGAAA	CCGCACCAAC
chrIII-NC_003074:20121130-20121330	90	7.61e-06	TGAGTTACTA	AAAATGGAAA	GTATTGCCTA
chrIII-NC_003074:4829131-4829331	86	7.61e-06	TGCTAATATA	AAAATGGAAA	TAATCAAGTG
chrV-NC_003076:2561208-2561408	56	1.53e-05	TGCCATGGAA	AAATTGGAAA	GTTCAGATCC
chrV-NC_003076:14755579-14755779	109	1.53e-05	CCATTTATCC	AAATTAGAAA	TTGTTTGGTA
chrIV-NC_003075:6771910-6772110	39	1.53e-05	TTCGATGATG	AAATTAGAAA	GTTCTCACTC
chrIV-NC_003075:6771834-6772034	115	1.53e-05	TTCGATGATG	AAATTAGAAA	GTTCTCACTC
chrII-NC_003071:19015799-19015999	73	1.53e-05	CCTCCATGCA	AAATTGGAAA	GCCCTAAGAC
chrII-NC_003071:18095440-18095640	134	1.53e-05	AAATCAACCA	AAATTAGAAA	AATCCAACTC
chrIII-NC_003074:11386965-11387165	142	1.53e-05	ACAATCAACC	AAATTAGAAA	GTGTAGAGGA
chrIII-NC_003074:1976038-1976238	62	1.53e-05	AGACTTTCCT	AAATTAGAAA	GTCTCTGTTC
chrIV-NC_003075:18472024-18472224	124	2.29e-05	CGGAAAATTA	AAAATAGTAA	TTGACACGTC
chrIV-NC_003075:16860561-16860761	86	2.29e-05	TCTTCTACCG	AAAATGGTAA	TGCTGACCAA
chrIV-NC_003075:12379981-12380181	91	2.29e-05	TCAAAAAACA	AAAATAGTAA	ACAATCACAT
chrI-NC_003070:19070051-19070251	116	2.29e-05	ATGGAGTACC	AAAATAGTAA	TATGTTCCAT
chrII-NC_003071:11771575-11771775	132	2.29e-05	AACATTTCCA	AAAATGGTAA	GTCCAAGAAT
chrII-NC_003071:9770577-9770777	53	2.29e-05	TTGATGTACC	AAAATAGTAA	GTGATTCCAA
chrIII-NC_003074:5236683-5236883	152	2.29e-05	TTTCTTTCCT	AAAATAGTAA	CAATTCACAC
chrIII-NC_003074:5236747-5236947	88	2.29e-05	TTTCTTTCCT	AAAATAGTAA	CAATTCACAC
chrII-NC_003071:12946397-12946597	117	2.77e-05	CCAAAAGTTG	AAAAGAGAAA	AGAAAGAGAA
chrIII-NC_003074:2056022-2056222	16	2.77e-05	GATGTTTACG	AAAAGAGAAA	ACAAACAAAC
chrV-NC_003076:5962181-5962381	180	3.53e-05	TTTATAGAAT	AAAATACAAA	CAGAAGTTTG
chrIV-NC_003075:16613081-16613281	48	4.77e-05	TTGTCCTTCA	AAATTAGTAA	TAGTCATTGT
chrI-NC_003070:23412259-23412459	132	4.77e-05	TCCAAGATAT	AAATTGGTAA	GGTCCACGCG
chrI-NC_003070:8166392-8166592	7	4.77e-05	TATTTTG	AAAATTGAAA	TGTATACTAA
chrII-NC_003071:11941166-11941366	27	4.77e-05	AAACTGAGCC	AAATTAGTAA	GACAAACACA
chrV-NC_003076:15997367-15997567	131	6.00e-05	GACAATATCA	AAAAAGGAAA	CATTTAACAA
chrIV-NC_003075:1494888-1495088	98	6.00e-05	ACCCAGAACG	AAAAAGGAAA	CTTTTTCCTA
chrII-NC_003071:17819771-17819971	78	6.00e-05	GGGATTACCA	AAAAAGGAAA	GTTTCCAAAA
chrIII-NC_003074:20379053-20379253	163	6.48e-05	TCCAATAGGT	AAAAGAGTAA	CCTTTTTTCT
chrIII-NC_003074:18855259-18855459	32	6.48e-05	CAAGATACCC	AAAAGGGTAA	AACGACACGC
chrV-NC_003076:23762535-23762735	130	7.71e-05	ATATGTTTAC	AAATTACAAA	TGGGCCTTAT
chrV-NC_003076:5529995-5530195	117	7.71e-05	CTCACCGAGA	AAAACAGAAA	AAGCTGCTAT
chrI-NC_003070:4082490-4082690	92	7.71e-05	TTATTGACCA	AAAACGGAAA	CTGATGTACT
chrIII-NC_003074:21153604-21153804	127	7.71e-05	CGAACACGAC	AAATTGCAAA	AGAATAAAAA
chrIII-NC_003074:2011442-2011642	151	7.71e-05	GCCGCCAGAC	AAATTGCAAA	CCGAAATTGA
chrI-NC_003070:24760580-24760780	59	8.19e-05	ATATTTCTAT	AAATTTGAAA	ATAAACAATT
chrI-NC_003070:24732448-24732648	29	9.43e-05	ATTAGAAGTG	AAAATTGTAA	CCACAAGAGT
chrV-NC_003076:10356668-10356868	81	1.11e-04	AACCATTCCC	AAATAGGAAA	AACATTTGGA
chrV-NC_003076:6833045-6833245	137	1.11e-04	TTTAATCCTT	AAAAGACAAA	ATATCTTTAA
chrV-NC_003076:9480398-9480598	61	1.11e-04	AAATTTGCCA	AAAGTGGAAA	CATGTCGACC
chrI-NC_003070:11472862-11473062	60	1.11e-04	AATAAAGCCC	AAAAGACAAA	AATCTAAAGT
chrV-NC_003076:4460424-4460624	184	1.24e-04	TATTCCCTTC	AAAATGGGAA	TATTAT
chrV-NC_003076:7833316-7833516	187	1.58e-04	CTGTGACCCA	AAAATTCAAA	GGA
chrV-NC_003076:9515557-9515757	91	1.58e-04	ATTCGAAAAC	AAAATTCAAA	TAGTGTGAAT
chrII-NC_003071:6920409-6920609	65	1.58e-04	AACATCATCA	AGAATAGAAA	TCTCTTCGTA

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:2056022-2056222	2.77e-05
chrIII-NC_003074:1976038-1976238	1.53e-05
chrIII-NC_003074:4829131-4829331	7.61e-06
chrIII-NC_003074:11386965-11387165	1.53e-05
chrIII-NC_003074:20121130-20121330	7.61e-06
chrIII-NC_003074:2011442-2011642	7.71e-05
chrIII-NC_003074:21153604-21153804	7.71e-05
chrIII-NC_003074:18855259-18855459	6.48e-05
chrIII-NC_003074:665060-665260	7.61e-06
chrIII-NC_003074:20379053-20379253	6.48e-05
chrIII-NC_003074:4606158-4606358	7.61e-06
chrIII-NC_003074:5236747-5236947	2.29e-05
chrIII-NC_003074:22141193-22141393	7.61e-06
chrIII-NC_003074:5236683-5236883	2.29e-05
chrII-NC_003071:18095440-18095640	1.53e-05
chrII-NC_003071:11941166-11941366	4.77e-05
chrII-NC_003071:9770577-9770777	2.29e-05
chrII-NC_003071:6920409-6920609	1.58e-04
chrII-NC_003071:12946397-12946597	2.77e-05
chrII-NC_003071:17819771-17819971	6.00e-05
chrII-NC_003071:19015799-19015999	1.53e-05
chrII-NC_003071:11771575-11771775	2.29e-05
chrI-NC_003070:8166392-8166592	4.77e-05
chrI-NC_003070:19070051-19070251	2.29e-05
chrI-NC_003070:24331613-24331813	7.61e-06
chrI-NC_003070:24732448-24732648	9.43e-05
chrI-NC_003070:23412259-23412459	4.77e-05
chrI-NC_003070:24760580-24760780	8.19e-05
chrI-NC_003070:29121010-29121210	7.61e-06
chrI-NC_003070:29406817-29407017	7.61e-06
chrI-NC_003070:4082490-4082690	7.71e-05
chrI-NC_003070:11472862-11473062	1.11e-04
chrI-NC_003070:16713584-16713784	7.61e-06
chrIV-NC_003075:12379981-12380181	2.29e-05
chrIV-NC_003075:16613081-16613281	4.77e-05
chrIV-NC_003075:16860561-16860761	2.29e-05
chrIV-NC_003075:18472024-18472224	2.29e-05
chrIV-NC_003075:1494888-1495088	6.00e-05
chrIV-NC_003075:6771834-6772034	1.53e-05
chrIV-NC_003075:6771910-6772110	1.53e-05
chrV-NC_003076:5529995-5530195	7.71e-05
chrV-NC_003076:23762535-23762735	7.71e-05
chrV-NC_003076:9480398-9480598	1.11e-04
chrV-NC_003076:24239588-24239788	7.61e-06
chrV-NC_003076:14755579-14755779	1.53e-05
chrV-NC_003076:6833045-6833245	1.11e-04
chrV-NC_003076:10356668-10356868	1.11e-04
chrV-NC_003076:4460424-4460624	1.24e-04
chrV-NC_003076:9515557-9515757	1.58e-04
chrV-NC_003076:15997367-15997567	6.00e-05
chrV-NC_003076:2561208-2561408	1.53e-05
chrV-NC_003076:5962181-5962381	3.53e-05
chrV-NC_003076:7833316-7833516	1.58e-04
		0 50 100 150 200

Time 371.5 secs.

Motif 7

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Summary

Sequence Logo

E-value	1.9e+001
Width	9
Sites	10

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

CACCAACCA

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrIV-NC_003075:17798664-17798864	179	2.32e-06	AAAAATGTGA	CACCAACCA	AAGATCTCGC
chrI-NC_003070:1143756-1143956	138	2.32e-06	TAAGCTGCTC	CACCAACCA	ATTAAAACAC
chrI-NC_003070:6560769-6560969	161	2.32e-06	CCCCACAAAT	CACCAACCA	TTGATTGAGA
chrI-NC_003070:20876436-20876636	1	2.32e-06	T	CACCAACCA	TTAGTCTTTT
chrI-NC_003070:1143820-1144020	74	2.32e-06	TAAGCTGCTC	CACCAACCA	ATTAAAACAC
chrII-NC_003071:19015799-19015999	96	2.32e-06	CTAAGACGAA	CACCAACCA	TACGCCATCG
chrII-NC_003071:19491297-19491497	45	2.32e-06	TCGGTCGTAG	CACCAACCA	CATTCGATTT
chrIII-NC_003074:665060-665260	50	2.32e-06	ATAGAAACCG	CACCAACCA	AAATTAGACT
chrIII-NC_003074:2016186-2016386	128	2.32e-06	AAGTGATCAC	CACCAACCA	CTTCTTATCA
chrIII-NC_003074:5470385-5470585	124	6.02e-06	TATTGGAATC	CACAAACCA	AAGTCACTAG

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:2016186-2016386	2.32e-06
chrIII-NC_003074:665060-665260	2.32e-06
chrIII-NC_003074:5470385-5470585	6.02e-06
chrII-NC_003071:19491297-19491497	2.32e-06
chrII-NC_003071:19015799-19015999	2.32e-06
chrI-NC_003070:1143820-1144020	2.32e-06
chrI-NC_003070:20876436-20876636	2.32e-06
chrI-NC_003070:6560769-6560969	2.32e-06
chrI-NC_003070:1143756-1143956	2.32e-06
chrIV-NC_003075:17798664-17798864	2.32e-06
		0 50 100 150 200

Time 429.5 secs.

Motif 8

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Summary

Sequence Logo

E-value	1.1e+003
Width	10
Sites	40

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

CTTTC[TC]A[TA]TT

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrI-NC_003070:7930400-7930600	76	3.04e-06	GTGAATGAGA	CTTTCTATTT	TTGGGAGTAG
chrII-NC_003071:8813586-8813786	67	3.04e-06	CATCTTTCAT	CTTTCTATTT	CTAGCAGAGT
chrIII-NC_003074:5216309-5216509	116	3.04e-06	TGGTTTCTCT	CTTTCTATTT	CCAATCAATA
chrIII-NC_003074:5216276-5216476	149	3.04e-06	TGGTTTCTCT	CTTTCTATTT	CCAATCAATA
chrV-NC_003076:973984-974184	152	6.07e-06	GCCAGGTCAG	CTTTCTAATT	TGGAACTGGG
chrV-NC_003076:20014837-20015037	140	6.07e-06	TAAAGTAGAG	CTTTCTAATT	CGAGCAAGTA
chrI-NC_003070:72146-72346	121	6.07e-06	ATATCCAAAA	CTTTCTAATT	TGGTTAGAGG
chrIII-NC_003074:5470385-5470585	80	6.07e-06	AAATAGACGT	CTTTCTAATT	GGAGTTTGTC
chrIII-NC_003074:21153604-21153804	90	6.07e-06	AATCTTTGGA	CTTTCTAATT	TTGGGAACAT
chrII-NC_003071:9580055-9580255	106	7.96e-06	ACACGATTTA	CTTTCCATTT	CAGTCGTCTT
chrV-NC_003076:1375822-1376022	129	9.84e-06	CGTCACCTGG	CTTTCCAATT	TCCAAATAAA
chrI-NC_003070:27294385-27294585	106	9.84e-06	CAGCCAAATT	CTTTCCAATT	ATGGAATGTT
chrIII-NC_003074:19837055-19837255	97	9.84e-06	AAATTGCACA	CTTTCCAATT	TAGTACTTTT
chrII-NC_003071:18095440-18095640	106	1.29e-05	AAGCCAAAAT	GTTTCTATTT	ATAAATCAAA
chrIII-NC_003074:17223729-17223929	166	1.29e-05	GCTCTGTTTT	GTTTCTATTT	TCATGACTTT
chrIII-NC_003074:10094903-10095103	21	1.29e-05	TTTATAAAAA	GTTTCTATTT	TCGTTCTTTT
chrIII-NC_003074:4358519-4358719	26	1.59e-05	TTTAGAAATA	GTTTCTAATT	CTGGAGGAAA
chrIII-NC_003074:4359967-4360167	170	1.59e-05	GGAACTATAA	GTTTCTAATT	TTAGGACTTA
chrI-NC_003070:28292956-28293156	6	2.57e-05	TCTTTT	CTTTCTATAT	ATTAAAAGTG
chrI-NC_003070:11472862-11473062	149	2.57e-05	TGATTCTAAA	GTTTCCATTT	GTTTTGTTTT
chrI-NC_003070:4548671-4548871	90	2.57e-05	TCCATGGATA	CTTTCTATAT	TTGGAAAGTT
chrI-NC_003070:25335093-25335293	174	2.57e-05	TTTACTCGCA	TTTTCTATTT	ATGTTTAAAG
chrII-NC_003071:14489582-14489782	111	2.57e-05	ACCCCGCTTA	CTTTCTATAT	CTGTACACTT
chrV-NC_003076:8376552-8376752	157	3.55e-05	GCATGGAAGA	TTTTCTAATT	ATACAACTCA
chrV-NC_003076:8376625-8376825	84	3.55e-05	GCATGGAAGA	TTTTCTAATT	ATACAACTCA
chrIV-NC_003075:17409244-17409444	87	3.55e-05	ACTATCACGA	GTTTCCAATT	TGGGAAAAAG
chrI-NC_003070:28467619-28467819	34	3.55e-05	TAGGGCCTAT	TTTTCTAATT	GGCCCGTATA
chrI-NC_003070:5018083-5018283	66	3.55e-05	CGGTTGCAAT	CTTTCTAAAT	TTCCAAATGG
chrV-NC_003076:266618-266818	59	4.16e-05	GAGTCACGGC	CTTTCTTTTT	ACTTTTTTTA
chrI-NC_003070:29399321-29399521	97	4.16e-05	AAGAAGAAGA	CTTACTATTT	TTGGATATTT
chrIII-NC_003074:19453239-19453439	104	4.16e-05	CACGACACGA	CTTACTATTT	GGAGTCATGG
chrIII-NC_003074:1846867-1847067	79	4.16e-05	GATTTCCCAA	CTTACTATTT	TTGGAAGAAA
chrI-NC_003070:5968015-5968215	183	4.35e-05	ATTCGGAAAG	CTTTCTACTT	CGGGAAA
chrV-NC_003076:26807915-26808115	44	5.25e-05	CACCTGTACT	CTTTCTTATT	TTGGTATCTT
chrV-NC_003076:26806403-26806603	140	5.55e-05	GTATCTACCT	CTTTCAAATT	TACAAGTACT
chrIV-NC_003075:12769653-12769853	147	5.55e-05	TAATTAGTTA	CTTTCAAATT	TTAAATAAAT
chrIII-NC_003074:20121130-20121330	156	6.05e-05	AAGTGATAAA	TTTTCCATTT	ATGTAAACTG
chrIV-NC_003075:7369585-7369785	170	6.24e-05	TCTTTTTTGT	CTTTCTCTTT	CGCATTATCT
chrV-NC_003076:448654-448854	29	6.91e-05	CATTTTACAA	CCTTCTATTT	TTGAGAGACC
chrI-NC_003070:6174672-6174872	173	7.48e-05	GTTTAGGACT	CTTTCCTTTT	ATAGAACAGT

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:5216276-5216476	3.04e-06
chrIII-NC_003074:19837055-19837255	9.84e-06
chrIII-NC_003074:4359967-4360167	1.59e-05
chrIII-NC_003074:5216309-5216509	3.04e-06
chrIII-NC_003074:1846867-1847067	4.16e-05
chrIII-NC_003074:20121130-20121330	6.05e-05
chrIII-NC_003074:4358519-4358719	1.59e-05
chrIII-NC_003074:21153604-21153804	6.07e-06
chrIII-NC_003074:5470385-5470585	6.07e-06
chrIII-NC_003074:10094903-10095103	1.29e-05
chrIII-NC_003074:17223729-17223929	1.29e-05
chrIII-NC_003074:19453239-19453439	4.16e-05
chrII-NC_003071:18095440-18095640	1.29e-05
chrII-NC_003071:8813586-8813786	3.04e-06
chrII-NC_003071:14489582-14489782	2.57e-05
chrII-NC_003071:9580055-9580255	7.96e-06
chrI-NC_003070:72146-72346	6.07e-06
chrI-NC_003070:7930400-7930600	3.04e-06
chrI-NC_003070:5968015-5968215	4.35e-05
chrI-NC_003070:27294385-27294585	9.84e-06
chrI-NC_003070:25335093-25335293	2.57e-05
chrI-NC_003070:5018083-5018283	3.55e-05
chrI-NC_003070:29399321-29399521	4.16e-05
chrI-NC_003070:4548671-4548871	2.57e-05
chrI-NC_003070:11472862-11473062	2.57e-05
chrI-NC_003070:28467619-28467819	3.55e-05
chrI-NC_003070:6174672-6174872	7.48e-05
chrI-NC_003070:28292956-28293156	2.57e-05
chrIV-NC_003075:12769653-12769853	5.55e-05
chrIV-NC_003075:17409244-17409444	3.55e-05
chrIV-NC_003075:7369585-7369785	6.24e-05
chrV-NC_003076:1375822-1376022	9.84e-06
chrV-NC_003076:26806403-26806603	5.55e-05
chrV-NC_003076:8376625-8376825	3.55e-05
chrV-NC_003076:26807915-26808115	5.25e-05
chrV-NC_003076:20014837-20015037	6.07e-06
chrV-NC_003076:8376552-8376752	3.55e-05
chrV-NC_003076:448654-448854	6.91e-05
chrV-NC_003076:266618-266818	4.16e-05
chrV-NC_003076:973984-974184	6.07e-06
		0 50 100 150 200

Time 487.4 secs.

Motif 9

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Summary

Sequence Logo

E-value	7.3e-001
Width	10
Sites	20

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

C[CG]ACGTCA[TG]C

Further Analysis

Submit this motif to

Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:973984-974184	95	4.51e-07	ATGGTGGGTC	CCACGTCATC	TTGAGATTTT
chrI-NC_003070:4082490-4082690	175	4.51e-07	CAACTTGTAG	CCACGTCATC	TTAAGTCAAA
chrII-NC_003071:12326803-12327003	95	4.51e-07	CACAAAATCA	CCACGTCATC	AATCCTTGTC
chrIV-NC_003075:6906145-6906345	95	7.31e-07	CTCGCTCTCT	CCACGTCAGC	AACTCTTGCC
chrI-NC_003070:26164321-26164521	147	7.31e-07	ACATCTAAGC	CCACGTCAGC	TGTAATACAC
chrII-NC_003071:12108197-12108397	95	7.31e-07	CAAAATAGTG	CCACGTCAGC	AACTAACAGG
chrIV-NC_003075:16256073-16256273	81	1.18e-06	TGGTTAGTGT	CGACGTCATC	ACTTCTGACA
chrI-NC_003070:23126552-23126752	126	2.47e-06	CAACTTGTCA	CCACGTCATT	ATTTCTGACT
chrII-NC_003071:7935107-7935307	120	2.47e-06	TTCCTTCTCC	CCACGTCATT	CAGTTTCTTC
chrV-NC_003076:1212725-1212925	64	4.21e-06	TCAACGGTGT	CGACGTCACC	GGGATTCATA
chrV-NC_003076:25086812-25087012	66	6.28e-06	GCTTCAATGG	CCACGTAATC	AACTGACATG
chrI-NC_003070:7340458-7340658	95	6.28e-06	CGTGGCTCTG	CCACGTAATC	TTAGACCGGC
chrIII-NC_003074:11386965-11387165	74	6.28e-06	TTCGGTCTAT	CGACGTCATT	CCTGTGGGTG
chrV-NC_003076:4460424-4460624	80	8.92e-06	AGGTGTAAAA	GCACGTCAGC	AAGAGAAAAC
chrI-NC_003070:28804880-28805080	95	1.04e-05	ACCCATCCCT	CCACGTCATA	ACTACACGCG
chrIII-NC_003074:17739733-17739933	150	1.04e-05	AATATGGGCG	TGACGTCATC	TCCAATCTTT
chrII-NC_003071:8813586-8813786	168	1.17e-05	TATTCTTAAA	CGACGTCATG	TAATCTCTCC
chrII-NC_003071:560631-560831	180	1.17e-05	TTCTCGTTTC	CGACGTCGGC	CGTTTCTTTT
chrI-NC_003070:30371959-30372159	42	1.29e-05	ATCACAAAGT	CCATGTCATC	TGTCACCTAC
chrI-NC_003070:6311195-6311395	171	1.38e-05	CAATAATAAA	TGACGTCAGC	CCAAATGTCG

Block Diagrams

Name	Lowest p-value	Motif Location
chrIII-NC_003074:11386965-11387165	6.28e-06
chrIII-NC_003074:17739733-17739933	1.04e-05
chrII-NC_003071:7935107-7935307	2.47e-06
chrII-NC_003071:560631-560831	1.17e-05
chrII-NC_003071:12326803-12327003	4.51e-07
chrII-NC_003071:12108197-12108397	7.31e-07
chrII-NC_003071:8813586-8813786	1.17e-05
chrI-NC_003070:30371959-30372159	1.29e-05
chrI-NC_003070:7340458-7340658	6.28e-06
chrI-NC_003070:23126552-23126752	2.47e-06
chrI-NC_003070:26164321-26164521	7.31e-07
chrI-NC_003070:4082490-4082690	4.51e-07
chrI-NC_003070:28804880-28805080	1.04e-05
chrI-NC_003070:6311195-6311395	1.38e-05
chrIV-NC_003075:16256073-16256273	1.18e-06
chrIV-NC_003075:6906145-6906345	7.31e-07
chrV-NC_003076:25086812-25087012	6.28e-06
chrV-NC_003076:1212725-1212925	4.21e-06
chrV-NC_003076:4460424-4460624	8.92e-06
chrV-NC_003076:973984-974184	4.51e-07
		0 50 100 150 200

Time 545 secs.

Motif 10

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Summary

Sequence Logo

E-value	3.4e+003
Width	10
Sites	4

Standard Reverse Complement

Download LOGO

Orientation: SSC: Format: Width: cm Height: cm

Regular expression

CTCACCGGTC

Further Analysis

Submit this motif to

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Data Formats

View the motif in PSPM Format

PSSM Format

BLOCKS Format

FASTA Format

Raw Format

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Sites

Click on any row to highlight sequence in all motifs.

Name	Start	p-value	Sites
chrV-NC_003076:8344069-8344269	49	2.82e-07	CATTTAACAT	CTCACCGGTC	TGGTTCGGTC
chrI-NC_003070:28467619-28467819	182	2.82e-07	ATACACTCCA	CTCACCGGTC	TGTCACCA
chrI-NC_003070:16467893-16468093	144	2.82e-07	ACGTTCGATG	CTCACCGGTC	GCGTCTTTAT
chrII-NC_003071:18786456-18786656	8	2.82e-07	ATCTATCC	CTCACCGGTC	TTCCGCTAAA

Block Diagrams

Name	Lowest p-value	Motif Location
chrII-NC_003071:18786456-18786656	2.82e-07
chrI-NC_003070:16467893-16468093	2.82e-07
chrI-NC_003070:28467619-28467819	2.82e-07
chrV-NC_003076:8344069-8344269	2.82e-07
		0 50 100 150 200

Time 602.3 secs.

All Motifs

Top

Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1

Motif 2

Motif 3

Motif 4

Motif 5

Motif 6

Motif 7

Motif 8

Motif 9

Motif 10

Name	Combined p-value	Motif Location
chrIII-NC_003074:5216276-5216476	1.44e-03
chrIII-NC_003074:22859396-22859596	5.91e-02
chrIII-NC_003074:2056022-2056222	5.84e-04
chrIII-NC_003074:19276369-19276569	6.41e-04
chrIII-NC_003074:20476530-20476730	1.96e-01
chrIII-NC_003074:1395996-1396196	1.38e-01
chrIII-NC_003074:1976038-1976238	4.39e-04
chrIII-NC_003074:2016186-2016386	1.42e-04
chrIII-NC_003074:7503344-7503544	3.85e-03
chrIII-NC_003074:4340381-4340581	7.04e-02
chrIII-NC_003074:21448653-21448853	3.44e-03
chrIII-NC_003074:21969467-21969667	3.84e-06
chrIII-NC_003074:8213415-8213615	1.21e-01
chrIII-NC_003074:4829131-4829331	1.10e-01
chrIII-NC_003074:11386965-11387165	4.27e-04
chrIII-NC_003074:20251636-20251836	4.69e-04
chrIII-NC_003074:19837055-19837255	4.55e-04
chrIII-NC_003074:18763347-18763547	1.98e-01
chrIII-NC_003074:4359967-4360167	1.61e-01
chrIII-NC_003074:5216309-5216509	1.97e-03
chrIII-NC_003074:10163215-10163415	2.76e-02
chrIII-NC_003074:1846867-1847067	1.05e-01
chrIII-NC_003074:20121130-20121330	1.31e-04
chrIII-NC_003074:2011442-2011642	1.38e-03
chrIII-NC_003074:16301670-16301870	2.21e-03
chrIII-NC_003074:8943976-8944176	6.35e-03
chrIII-NC_003074:877449-877649	1.89e-02
chrIII-NC_003074:17739733-17739933	2.31e-03
chrIII-NC_003074:4358519-4358719	7.83e-04
chrIII-NC_003074:21153604-21153804	1.53e-02
chrIII-NC_003074:18855259-18855459	1.10e-02
chrIII-NC_003074:665060-665260	4.47e-04
chrIII-NC_003074:5470385-5470585	6.67e-07
chrIII-NC_003074:19620573-19620773	1.20e-03
chrIII-NC_003074:10094903-10095103	5.90e-02
chrIII-NC_003074:20379053-20379253	3.29e-01
chrIII-NC_003074:4606158-4606358	4.16e-03
chrIII-NC_003074:17223729-17223929	3.74e-03
chrIII-NC_003074:1175197-1175397	1.97e-03
chrIII-NC_003074:8943216-8943416	2.56e-05
chrIII-NC_003074:9717966-9718166	2.97e-03
chrIII-NC_003074:611194-611394	5.69e-01
chrIII-NC_003074:12453857-12454057	3.38e-02
chrIII-NC_003074:5236747-5236947	2.12e-03
chrIII-NC_003074:22141193-22141393	1.46e-03
chrIII-NC_003074:20988101-20988301	8.53e-02
chrIII-NC_003074:19453239-19453439	2.52e-01
chrIII-NC_003074:16755545-16755745	1.62e-02
chrIII-NC_003074:3003367-3003567	2.65e-02
chrIII-NC_003074:20988214-20988414	2.36e-04
chrIII-NC_003074:822690-822890	1.38e-02
chrIII-NC_003074:5236683-5236883	1.52e-03
chrII-NC_003071:7934198-7934398	1.65e-02
chrII-NC_003071:13036732-13036932	1.16e-02
chrII-NC_003071:7935107-7935307	5.02e-05
chrII-NC_003071:18882618-18882818	1.43e-02
chrII-NC_003071:17508903-17509103	1.54e-03
chrII-NC_003071:19114215-19114415	1.24e-04
chrII-NC_003071:17189231-17189431	2.52e-03
chrII-NC_003071:560631-560831	1.10e-03
chrII-NC_003071:12849576-12849776	1.79e-02
chrII-NC_003071:19100983-19101183	2.69e-02
chrII-NC_003071:12326803-12327003	4.75e-03
chrII-NC_003071:12108197-12108397	2.48e-05
chrII-NC_003071:8760319-8760519	3.93e-05
chrII-NC_003071:18095440-18095640	8.60e-03
chrII-NC_003071:12173602-12173802	6.77e-02
chrII-NC_003071:16111201-16111401	1.15e-01
chrII-NC_003071:12321522-12321722	6.29e-02
chrII-NC_003071:18188065-18188265	3.20e-02
chrII-NC_003071:19227465-19227665	2.66e-03
chrII-NC_003071:19491297-19491497	1.46e-02
chrII-NC_003071:18786456-18786656	6.10e-05
chrII-NC_003071:8813586-8813786	7.97e-04
chrII-NC_003071:14851801-14852001	1.23e-01
chrII-NC_003071:15099380-15099580	2.84e-04
chrII-NC_003071:11941166-11941366	8.22e-02
chrII-NC_003071:9770577-9770777	5.67e-02
chrII-NC_003071:14450955-14451155	6.04e-04
chrII-NC_003071:641561-641761	9.19e-03
chrII-NC_003071:12946397-12946597	8.21e-03
chrII-NC_003071:17819771-17819971	3.70e-04
chrII-NC_003071:17975979-17976179	1.39e-04
chrII-NC_003071:19015799-19015999	3.98e-06
chrII-NC_003071:16505491-16505691	1.40e-01
chrII-NC_003071:8544091-8544291	9.26e-04
chrII-NC_003071:14489582-14489782	3.85e-02
chrII-NC_003071:11771575-11771775	8.54e-02
chrII-NC_003071:9580055-9580255	3.13e-02
chrII-NC_003071:14193902-14194102	3.21e-06
chrII-NC_003071:17796012-17796212	2.71e-02
chrII-NC_003071:13036795-13036995	6.41e-02
chrII-NC_003071:18423231-18423431	2.02e-04
chrI-NC_003070:8166392-8166592	2.70e-04
chrI-NC_003070:364212-364412	2.69e-06
chrI-NC_003070:22343054-22343254	2.92e-02
chrI-NC_003070:17253659-17253859	2.28e-02
chrI-NC_003070:16467893-16468093	2.07e-04
chrI-NC_003070:30371959-30372159	1.28e-02
chrI-NC_003070:72146-72346	2.62e-02
chrI-NC_003070:7340458-7340658	3.35e-02
chrI-NC_003070:6867963-6868163	3.01e-02
chrI-NC_003070:23126552-23126752	2.18e-06
chrI-NC_003070:23286838-23287038	5.27e-04
chrI-NC_003070:18321436-18321636	1.95e-03
chrI-NC_003070:7930400-7930600	1.10e-03
chrI-NC_003070:19070051-19070251	1.50e-01
chrI-NC_003070:26164321-26164521	1.10e-03
chrI-NC_003070:5137983-5138183	1.07e-01
chrI-NC_003070:24331613-24331813	4.47e-03
chrI-NC_003070:6174484-6174684	1.51e-03
chrI-NC_003070:24732448-24732648	6.00e-05
chrI-NC_003070:23412259-23412459	1.74e-02
chrI-NC_003070:26043093-26043293	8.54e-03
chrI-NC_003070:5968015-5968215	1.30e-02
chrI-NC_003070:28955713-28955913	4.08e-02
chrI-NC_003070:24760580-24760780	6.09e-03
chrI-NC_003070:27294385-27294585	3.90e-06
chrI-NC_003070:25335093-25335293	1.20e-02
chrI-NC_003070:29121010-29121210	3.95e-02
chrI-NC_003070:10860458-10860658	1.76e-02
chrI-NC_003070:5018083-5018283	7.45e-02
chrI-NC_003070:1143820-1144020	1.39e-03
chrI-NC_003070:18627576-18627776	4.42e-03
chrI-NC_003070:29406817-29407017	1.55e-02
chrI-NC_003070:29399321-29399521	3.86e-02
chrI-NC_003070:18942515-18942715	7.12e-05
chrI-NC_003070:3108015-3108215	8.38e-03
chrI-NC_003070:6746757-6746957	1.26e-01
chrI-NC_003070:20876436-20876636	1.73e-04
chrI-NC_003070:4082490-4082690	2.72e-04
chrI-NC_003070:28804880-28805080	2.02e-05
chrI-NC_003070:22877423-22877623	5.89e-03
chrI-NC_003070:1880787-1880987	1.75e-01
chrI-NC_003070:4548671-4548871	1.02e-02
chrI-NC_003070:6899616-6899816	8.54e-04
chrI-NC_003070:8598740-8598940	2.63e-03
chrI-NC_003070:11472862-11473062	9.87e-03
chrI-NC_003070:28467619-28467819	1.70e-04
chrI-NC_003070:6311195-6311395	1.24e-01
chrI-NC_003070:23734604-23734804	4.07e-04
chrI-NC_003070:30249255-30249455	1.33e-01
chrI-NC_003070:1773727-1773927	1.23e-02
chrI-NC_003070:23238411-23238611	7.13e-03
chrI-NC_003070:6560769-6560969	3.50e-03
chrI-NC_003070:16713584-16713784	5.45e-02
chrI-NC_003070:12228596-12228796	1.18e-01
chrI-NC_003070:21517777-21517977	1.90e-03
chrI-NC_003070:7930555-7930755	1.91e-04
chrI-NC_003070:21043046-21043246	4.43e-05
chrI-NC_003070:25736387-25736587	1.76e-03
chrI-NC_003070:22512251-22512451	6.04e-03
chrI-NC_003070:8596542-8596742	5.29e-06
chrI-NC_003070:4132322-4132522	2.67e-04
chrI-NC_003070:26097575-26097775	3.68e-03
chrI-NC_003070:6174672-6174872	1.15e-04
chrI-NC_003070:9763126-9763326	1.82e-02
chrI-NC_003070:21133615-21133815	4.77e-02
chrI-NC_003070:7270500-7270700	3.35e-03
chrI-NC_003070:1143756-1143956	7.09e-04
chrI-NC_003070:25320229-25320429	5.56e-02
chrI-NC_003070:28292956-28293156	1.73e-03
chrI-NC_003070:26164485-26164685	5.71e-03
chrI-NC_003070:28143859-28144059	6.35e-04
chrI-NC_003070:28315795-28315995	2.33e-06
chrI-NC_003070:3664090-3664290	1.15e-01
chrI-NC_003070:1953781-1953981	1.03e-02
chrIV-NC_003075:13685900-13686100	2.28e-04
chrIV-NC_003075:13017928-13018128	3.54e-03
chrIV-NC_003075:12379981-12380181	7.73e-02
chrIV-NC_003075:17535190-17535390	9.91e-03
chrIV-NC_003075:13023435-13023635	4.68e-03
chrIV-NC_003075:17395740-17395940	1.51e-03
chrIV-NC_003075:6752985-6753185	2.42e-03
chrIV-NC_003075:14118209-14118409	8.56e-03
chrIV-NC_003075:18318587-18318787	5.92e-03
chrIV-NC_003075:272143-272343	1.75e-02
chrIV-NC_003075:14266719-14266919	3.39e-02
chrIV-NC_003075:17397611-17397811	1.11e-01
chrIV-NC_003075:16613081-16613281	2.10e-01
chrIV-NC_003075:16256073-16256273	1.62e-04
chrIV-NC_003075:16656874-16657074	7.73e-02
chrIV-NC_003075:8100451-8100651	6.83e-03
chrIV-NC_003075:12769653-12769853	1.07e-02
chrIV-NC_003075:8203258-8203458	2.12e-02
chrIV-NC_003075:13854216-13854416	1.69e-04
chrIV-NC_003075:16860561-16860761	2.08e-01
chrIV-NC_003075:17048860-17049060	2.79e-04
chrIV-NC_003075:18472024-18472224	1.49e-03
chrIV-NC_003075:7349242-7349442	3.98e-02
chrIV-NC_003075:1494888-1495088	3.56e-02
chrIV-NC_003075:10600009-10600209	6.44e-04
chrIV-NC_003075:13023617-13023817	5.34e-02
chrIV-NC_003075:6771834-6772034	3.89e-02
chrIV-NC_003075:17736542-17736742	3.21e-01
chrIV-NC_003075:17798664-17798864	2.79e-03
chrIV-NC_003075:6906145-6906345	4.79e-02
chrIV-NC_003075:17409244-17409444	2.33e-03
chrIV-NC_003075:6771910-6772110	8.30e-02
chrIV-NC_003075:12051681-12051881	2.05e-01
chrIV-NC_003075:14331411-14331611	5.59e-06
chrIV-NC_003075:13016235-13016435	2.94e-02
chrIV-NC_003075:15231300-15231500	1.67e-02
chrIV-NC_003075:17334368-17334568	4.58e-05
chrIV-NC_003075:9443322-9443522	2.90e-02
chrIV-NC_003075:7369585-7369785	1.57e-04
chrV-NC_003076:8344069-8344269	8.42e-03
chrV-NC_003076:16135188-16135388	4.27e-01
chrV-NC_003076:5529995-5530195	1.24e-01
chrV-NC_003076:5177754-5177954	3.54e-02
chrV-NC_003076:1375822-1376022	6.71e-04
chrV-NC_003076:26806403-26806603	1.03e-02
chrV-NC_003076:24836685-24836885	1.44e-05
chrV-NC_003076:18215713-18215913	3.24e-02
chrV-NC_003076:7266265-7266465	2.73e-03
chrV-NC_003076:3865585-3865785	2.01e-01
chrV-NC_003076:10459004-10459204	6.26e-03
chrV-NC_003076:7524647-7524847	7.84e-03
chrV-NC_003076:2985446-2985646	8.98e-02
chrV-NC_003076:23762535-23762735	1.24e-01
chrV-NC_003076:25086812-25087012	2.41e-03
chrV-NC_003076:7265855-7266055	4.98e-04
chrV-NC_003076:8376625-8376825	8.09e-02
chrV-NC_003076:8359800-8360000	3.32e-02
chrV-NC_003076:21723045-21723245	6.25e-02
chrV-NC_003076:24935013-24935213	4.14e-02
chrV-NC_003076:7673076-7673276	2.52e-02
chrV-NC_003076:23785171-23785371	1.66e-02
chrV-NC_003076:24886947-24887147	1.43e-01
chrV-NC_003076:900190-900390	5.67e-03
chrV-NC_003076:26807915-26808115	2.53e-03
chrV-NC_003076:16635429-16635629	1.36e-01
chrV-NC_003076:16451031-16451231	5.44e-04
chrV-NC_003076:25900220-25900420	2.72e-03
chrV-NC_003076:24239588-24239788	4.60e-04
chrV-NC_003076:23773879-23774079	4.40e-02
chrV-NC_003076:20014837-20015037	4.86e-02
chrV-NC_003076:9133236-9133436	1.10e-03
chrV-NC_003076:766920-767120	9.70e-02
chrV-NC_003076:26786389-26786589	1.08e-02
chrV-NC_003076:24953160-24953360	3.88e-05
chrV-NC_003076:14755579-14755779	1.05e-01
chrV-NC_003076:7960250-7960450	2.38e-03
chrV-NC_003076:23391751-23391951	1.34e-03
chrV-NC_003076:10356668-10356868	4.30e-04
chrV-NC_003076:1212725-1212925	1.56e-02
chrV-NC_003076:18358999-18359199	3.16e-03
chrV-NC_003076:4460424-4460624	6.12e-05
chrV-NC_003076:26155-26355	1.07e-03
chrV-NC_003076:21437588-21437788	3.05e-02
chrV-NC_003076:4734829-4735029	6.01e-02
chrV-NC_003076:24240069-24240269	4.83e-03
chrV-NC_003076:8376552-8376752	1.99e-03
chrV-NC_003076:9515557-9515757	1.36e-02
chrV-NC_003076:15460593-15460793	1.52e-02
chrV-NC_003076:16450886-16451086	1.36e-01
chrV-NC_003076:24239953-24240153	5.18e-02
chrV-NC_003076:756609-756809	2.80e-03
chrV-NC_003076:26805534-26805734	3.38e-01
chrV-NC_003076:5205507-5205707	7.71e-02
chrV-NC_003076:15997367-15997567	6.19e-02
chrV-NC_003076:2561208-2561408	1.34e-02
chrV-NC_003076:9628962-9629162	8.80e-03
chrV-NC_003076:448654-448854	3.26e-02
chrV-NC_003076:5962181-5962381	1.20e-04
chrV-NC_003076:266618-266818	1.25e-05
chrV-NC_003076:973984-974184	1.75e-08
chrV-NC_003076:24476843-24477043	1.67e-02
chrV-NC_003076:25158624-25158824	1.97e-04
		0 50 100 150 200

Motif 1

Motif 2

Motif 3

Motif 4

Motif 5

Motif 6

Motif 7

Motif 8

Motif 9

Motif 10

Top

MEME version

4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011)

Reference

Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

show training set...

Training set:

Datafile = 1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events.100bp.fasta
Alphabet = ACGT

Sequence name	Weighting	Length
chrIII-NC_003074:5216276-5216476	1.000000	200
chrIII-NC_003074:2056022-2056222	1.000000	200
chrIII-NC_003074:20476530-20476730	1.000000	200
chrIII-NC_003074:21678736-21678936	1.000000	200
chrIII-NC_003074:4340381-4340581	1.000000	200
chrIII-NC_003074:21969467-21969667	1.000000	200
chrIII-NC_003074:8213415-8213615	1.000000	200
chrIII-NC_003074:4829131-4829331	1.000000	200
chrIII-NC_003074:6019703-6019903	1.000000	200
chrIII-NC_003074:4359967-4360167	1.000000	200
chrIII-NC_003074:1846867-1847067	1.000000	200
chrIII-NC_003074:16301670-16301870	1.000000	200
chrIII-NC_003074:17739733-17739933	1.000000	200
chrIII-NC_003074:18855259-18855459	1.000000	200
chrIII-NC_003074:665060-665260	1.000000	200
chrIII-NC_003074:10094903-10095103	1.000000	200
chrIII-NC_003074:17223729-17223929	1.000000	200
chrIII-NC_003074:9717966-9718166	1.000000	200
chrIII-NC_003074:5236747-5236947	1.000000	200
chrIII-NC_003074:20988101-20988301	1.000000	200
chrIII-NC_003074:3003367-3003567	1.000000	200
chrIII-NC_003074:5236683-5236883	1.000000	200
chrII-NC_003071:7935107-7935307	1.000000	200
chrII-NC_003071:19114215-19114415	1.000000	200
chrII-NC_003071:12849576-12849776	1.000000	200
chrII-NC_003071:12108197-12108397	1.000000	200
chrII-NC_003071:12173602-12173802	1.000000	200
chrII-NC_003071:12321522-12321722	1.000000	200
chrII-NC_003071:11689161-11689361	1.000000	200
chrII-NC_003071:18786456-18786656	1.000000	200
chrII-NC_003071:15099380-15099580	1.000000	200
chrII-NC_003071:6920409-6920609	1.000000	200
chrII-NC_003071:641561-641761	1.000000	200
chrII-NC_003071:17975979-17976179	1.000000	200
chrII-NC_003071:19015799-19015999	1.000000	200
chrII-NC_003071:18811073-18811273	1.000000	200
chrII-NC_003071:11771575-11771775	1.000000	200
chrII-NC_003071:17796012-17796212	1.000000	200
chrI-NC_003070:8166392-8166592	1.000000	200
chrI-NC_003070:17253659-17253859	1.000000	200
chrI-NC_003070:72146-72346	1.000000	200
chrI-NC_003070:23126552-23126752	1.000000	200
chrI-NC_003070:18321436-18321636	1.000000	200
chrI-NC_003070:19070051-19070251	1.000000	200
chrI-NC_003070:24331613-24331813	1.000000	200
chrI-NC_003070:28954498-28954698	1.000000	200
chrI-NC_003070:5968015-5968215	1.000000	200
chrI-NC_003070:27294385-27294585	1.000000	200
chrI-NC_003070:10860458-10860658	1.000000	200
chrI-NC_003070:10353875-10354075	1.000000	200
chrI-NC_003070:29399321-29399521	1.000000	200
chrI-NC_003070:18942515-18942715	1.000000	200
chrI-NC_003070:20876436-20876636	1.000000	200
chrI-NC_003070:2214934-2215134	1.000000	200
chrI-NC_003070:22877423-22877623	1.000000	200
chrI-NC_003070:4548671-4548871	1.000000	200
chrI-NC_003070:11472862-11473062	1.000000	200
chrI-NC_003070:23734604-23734804	1.000000	200
chrI-NC_003070:23238411-23238611	1.000000	200
chrI-NC_003070:6560769-6560969	1.000000	200
chrI-NC_003070:12228596-12228796	1.000000	200
chrI-NC_003070:21043046-21043246	1.000000	200
chrI-NC_003070:22512251-22512451	1.000000	200
chrI-NC_003070:26097575-26097775	1.000000	200
chrI-NC_003070:9763126-9763326	1.000000	200
chrI-NC_003070:1143756-1143956	1.000000	200
chrI-NC_003070:26164485-26164685	1.000000	200
chrI-NC_003070:7065346-7065546	1.000000	200
chrI-NC_003070:28954838-28955038	1.000000	200
chrIV-NC_003075:11604485-11604685	1.000000	200
chrIV-NC_003075:33765-33965	1.000000	200
chrIV-NC_003075:13475395-13475595	1.000000	200
chrIV-NC_003075:17395740-17395940	1.000000	200
chrIV-NC_003075:18318587-18318787	1.000000	200
chrIV-NC_003075:14266719-14266919	1.000000	200
chrIV-NC_003075:16256073-16256273	1.000000	200
chrIV-NC_003075:8100451-8100651	1.000000	200
chrIV-NC_003075:8203258-8203458	1.000000	200
chrIV-NC_003075:17048860-17049060	1.000000	200
chrIV-NC_003075:1494888-1495088	1.000000	200
chrIV-NC_003075:11971410-11971610	1.000000	200
chrIV-NC_003075:17798664-17798864	1.000000	200
chrIV-NC_003075:17409244-17409444	1.000000	200
chrIV-NC_003075:14331411-14331611	1.000000	200
chrIV-NC_003075:17334368-17334568	1.000000	200
chrV-NC_003076:22649608-22649808	1.000000	200
chrV-NC_003076:16135188-16135388	1.000000	200
chrV-NC_003076:1375822-1376022	1.000000	200
chrV-NC_003076:18215713-18215913	1.000000	200
chrV-NC_003076:3865585-3865785	1.000000	200
chrV-NC_003076:2985446-2985646	1.000000	200
chrV-NC_003076:7265855-7266055	1.000000	200
chrV-NC_003076:556014-556214	1.000000	200
chrV-NC_003076:24935013-24935213	1.000000	200
chrV-NC_003076:23785171-23785371	1.000000	200
chrV-NC_003076:26807915-26808115	1.000000	200
chrV-NC_003076:9480398-9480598	1.000000	200
chrV-NC_003076:24239588-24239788	1.000000	200
chrV-NC_003076:9133236-9133436	1.000000	200
chrV-NC_003076:24953160-24953360	1.000000	200
chrV-NC_003076:23391751-23391951	1.000000	200
chrV-NC_003076:10356668-10356868	1.000000	200
chrV-NC_003076:4460424-4460624	1.000000	200
chrV-NC_003076:4734829-4735029	1.000000	200
chrV-NC_003076:9515557-9515757	1.000000	200
chrV-NC_003076:16450886-16451086	1.000000	200
chrV-NC_003076:5011856-5012056	1.000000	200
chrV-NC_003076:16440746-16440946	1.000000	200
chrV-NC_003076:2561208-2561408	1.000000	200
chrV-NC_003076:5962181-5962381	1.000000	200
chrV-NC_003076:973984-974184	1.000000	200
chrV-NC_003076:25158624-25158824	1.000000	200

Sequence name	Weighting	Length
chrIII-NC_003074:22859396-22859596	1.000000	200
chrIII-NC_003074:19276369-19276569	1.000000	200
chrIII-NC_003074:1395996-1396196	1.000000	200
chrIII-NC_003074:2016186-2016386	1.000000	200
chrIII-NC_003074:21448653-21448853	1.000000	200
chrIII-NC_003074:4732789-4732989	1.000000	200
chrIII-NC_003074:9170046-9170246	1.000000	200
chrIII-NC_003074:11386965-11387165	1.000000	200
chrIII-NC_003074:19837055-19837255	1.000000	200
chrIII-NC_003074:5216309-5216509	1.000000	200
chrIII-NC_003074:20121130-20121330	1.000000	200
chrIII-NC_003074:8943976-8944176	1.000000	200
chrIII-NC_003074:4358519-4358719	1.000000	200
chrIII-NC_003074:5920240-5920440	1.000000	200
chrIII-NC_003074:5470385-5470585	1.000000	200
chrIII-NC_003074:20379053-20379253	1.000000	200
chrIII-NC_003074:1175197-1175397	1.000000	200
chrIII-NC_003074:611194-611394	1.000000	200
chrIII-NC_003074:22141193-22141393	1.000000	200
chrIII-NC_003074:19453239-19453439	1.000000	200
chrIII-NC_003074:20988214-20988414	1.000000	200
chrII-NC_003071:7934198-7934398	1.000000	200
chrII-NC_003071:18882618-18882818	1.000000	200
chrII-NC_003071:17189231-17189431	1.000000	200
chrII-NC_003071:19100983-19101183	1.000000	200
chrII-NC_003071:8760319-8760519	1.000000	200
chrII-NC_003071:16111201-16111401	1.000000	200
chrII-NC_003071:18188065-18188265	1.000000	200
chrII-NC_003071:19491297-19491497	1.000000	200
chrII-NC_003071:8813586-8813786	1.000000	200
chrII-NC_003071:11941166-11941366	1.000000	200
chrII-NC_003071:14450955-14451155	1.000000	200
chrII-NC_003071:12946397-12946597	1.000000	200
chrII-NC_003071:18749207-18749407	1.000000	200
chrII-NC_003071:16505491-16505691	1.000000	200
chrII-NC_003071:12185823-12186023	1.000000	200
chrII-NC_003071:9580055-9580255	1.000000	200
chrII-NC_003071:13036795-13036995	1.000000	200
chrI-NC_003070:364212-364412	1.000000	200
chrI-NC_003070:16467893-16468093	1.000000	200
chrI-NC_003070:7340458-7340658	1.000000	200
chrI-NC_003070:23286838-23287038	1.000000	200
chrI-NC_003070:7930400-7930600	1.000000	200
chrI-NC_003070:26164321-26164521	1.000000	200
chrI-NC_003070:6174484-6174684	1.000000	200
chrI-NC_003070:23412259-23412459	1.000000	200
chrI-NC_003070:28955713-28955913	1.000000	200
chrI-NC_003070:25335093-25335293	1.000000	200
chrI-NC_003070:5018083-5018283	1.000000	200
chrI-NC_003070:18627576-18627776	1.000000	200
chrI-NC_003070:5070745-5070945	1.000000	200
chrI-NC_003070:3108015-3108215	1.000000	200
chrI-NC_003070:4082490-4082690	1.000000	200
chrI-NC_003070:30267504-30267704	1.000000	200
chrI-NC_003070:26038263-26038463	1.000000	200
chrI-NC_003070:6899616-6899816	1.000000	200
chrI-NC_003070:28467619-28467819	1.000000	200
chrI-NC_003070:30249255-30249455	1.000000	200
chrI-NC_003070:8563015-8563215	1.000000	200
chrI-NC_003070:25877584-25877784	1.000000	200
chrI-NC_003070:21517777-21517977	1.000000	200
chrI-NC_003070:16713723-16713923	1.000000	200
chrI-NC_003070:8596542-8596742	1.000000	200
chrI-NC_003070:1953904-1954104	1.000000	200
chrI-NC_003070:21133615-21133815	1.000000	200
chrI-NC_003070:25320229-25320429	1.000000	200
chrI-NC_003070:28143859-28144059	1.000000	200
chrI-NC_003070:10014137-10014337	1.000000	200
chrI-NC_003070:1953781-1953981	1.000000	200
chrIV-NC_003075:13017928-13018128	1.000000	200
chrIV-NC_003075:17535190-17535390	1.000000	200
chrIV-NC_003075:13023435-13023635	1.000000	200
chrIV-NC_003075:6752985-6753185	1.000000	200
chrIV-NC_003075:11425880-11426080	1.000000	200
chrIV-NC_003075:17397611-17397811	1.000000	200
chrIV-NC_003075:17319773-17319973	1.000000	200
chrIV-NC_003075:12769653-12769853	1.000000	200
chrIV-NC_003075:13854216-13854416	1.000000	200
chrIV-NC_003075:18472024-18472224	1.000000	200
chrIV-NC_003075:10600009-10600209	1.000000	200
chrIV-NC_003075:6771834-6772034	1.000000	200
chrIV-NC_003075:15948601-15948801	1.000000	200
chrIV-NC_003075:6771910-6772110	1.000000	200
chrIV-NC_003075:13016235-13016435	1.000000	200
chrIV-NC_003075:9443322-9443522	1.000000	200
chrV-NC_003076:8344069-8344269	1.000000	200
chrV-NC_003076:5529995-5530195	1.000000	200
chrV-NC_003076:26806403-26806603	1.000000	200
chrV-NC_003076:7266265-7266465	1.000000	200
chrV-NC_003076:10459004-10459204	1.000000	200
chrV-NC_003076:23762535-23762735	1.000000	200
chrV-NC_003076:8376625-8376825	1.000000	200
chrV-NC_003076:21723045-21723245	1.000000	200
chrV-NC_003076:20781642-20781842	1.000000	200
chrV-NC_003076:24886947-24887147	1.000000	200
chrV-NC_003076:16635429-16635629	1.000000	200
chrV-NC_003076:16451031-16451231	1.000000	200
chrV-NC_003076:23773879-23774079	1.000000	200
chrV-NC_003076:766920-767120	1.000000	200
chrV-NC_003076:14755579-14755779	1.000000	200
chrV-NC_003076:6833045-6833245	1.000000	200
chrV-NC_003076:1212725-1212925	1.000000	200
chrV-NC_003076:26155-26355	1.000000	200
chrV-NC_003076:24240069-24240269	1.000000	200
chrV-NC_003076:15460593-15460793	1.000000	200
chrV-NC_003076:24239953-24240153	1.000000	200
chrV-NC_003076:756609-756809	1.000000	200
chrV-NC_003076:5205507-5205707	1.000000	200
chrV-NC_003076:9628962-9629162	1.000000	200
chrV-NC_003076:7833316-7833516	1.000000	200
chrV-NC_003076:3857021-3857221	1.000000	200

Sequence name	Weighting	Length
chrIII-NC_003074:4732955-4733155	1.000000	200
chrIII-NC_003074:2348858-2349058	1.000000	200
chrIII-NC_003074:1976038-1976238	1.000000	200
chrIII-NC_003074:7503344-7503544	1.000000	200
chrIII-NC_003074:9373252-9373452	1.000000	200
chrIII-NC_003074:338008-338208	1.000000	200
chrIII-NC_003074:20478277-20478477	1.000000	200
chrIII-NC_003074:20251636-20251836	1.000000	200
chrIII-NC_003074:18763347-18763547	1.000000	200
chrIII-NC_003074:10163215-10163415	1.000000	200
chrIII-NC_003074:2011442-2011642	1.000000	200
chrIII-NC_003074:877449-877649	1.000000	200
chrIII-NC_003074:21153604-21153804	1.000000	200
chrIII-NC_003074:4572319-4572519	1.000000	200
chrIII-NC_003074:19620573-19620773	1.000000	200
chrIII-NC_003074:4606158-4606358	1.000000	200
chrIII-NC_003074:8943216-8943416	1.000000	200
chrIII-NC_003074:12453857-12454057	1.000000	200
chrIII-NC_003074:3885203-3885403	1.000000	200
chrIII-NC_003074:16755545-16755745	1.000000	200
chrIII-NC_003074:822690-822890	1.000000	200
chrII-NC_003071:13036732-13036932	1.000000	200
chrII-NC_003071:17508903-17509103	1.000000	200
chrII-NC_003071:560631-560831	1.000000	200
chrII-NC_003071:12326803-12327003	1.000000	200
chrII-NC_003071:18095440-18095640	1.000000	200
chrII-NC_003071:14331269-14331469	1.000000	200
chrII-NC_003071:19227465-19227665	1.000000	200
chrII-NC_003071:10628311-10628511	1.000000	200
chrII-NC_003071:14851801-14852001	1.000000	200
chrII-NC_003071:9770577-9770777	1.000000	200
chrII-NC_003071:9770677-9770877	1.000000	200
chrII-NC_003071:17819771-17819971	1.000000	200
chrII-NC_003071:12941156-12941356	1.000000	200
chrII-NC_003071:8544091-8544291	1.000000	200
chrII-NC_003071:14489582-14489782	1.000000	200
chrII-NC_003071:14193902-14194102	1.000000	200
chrII-NC_003071:18423231-18423431	1.000000	200
chrI-NC_003070:22343054-22343254	1.000000	200
chrI-NC_003070:30371959-30372159	1.000000	200
chrI-NC_003070:6867963-6868163	1.000000	200
chrI-NC_003070:28953600-28953800	1.000000	200
chrI-NC_003070:7142415-7142615	1.000000	200
chrI-NC_003070:5137983-5138183	1.000000	200
chrI-NC_003070:24732448-24732648	1.000000	200
chrI-NC_003070:26043093-26043293	1.000000	200
chrI-NC_003070:24760580-24760780	1.000000	200
chrI-NC_003070:29121010-29121210	1.000000	200
chrI-NC_003070:1143820-1144020	1.000000	200
chrI-NC_003070:29406817-29407017	1.000000	200
chrI-NC_003070:25743975-25744175	1.000000	200
chrI-NC_003070:6746757-6746957	1.000000	200
chrI-NC_003070:11454805-11455005	1.000000	200
chrI-NC_003070:28804880-28805080	1.000000	200
chrI-NC_003070:1880787-1880987	1.000000	200
chrI-NC_003070:8598740-8598940	1.000000	200
chrI-NC_003070:6311195-6311395	1.000000	200
chrI-NC_003070:1773727-1773927	1.000000	200
chrI-NC_003070:20084599-20084799	1.000000	200
chrI-NC_003070:16713584-16713784	1.000000	200
chrI-NC_003070:7930555-7930755	1.000000	200
chrI-NC_003070:25736387-25736587	1.000000	200
chrI-NC_003070:4132322-4132522	1.000000	200
chrI-NC_003070:6174672-6174872	1.000000	200
chrI-NC_003070:7270500-7270700	1.000000	200
chrI-NC_003070:28292956-28293156	1.000000	200
chrI-NC_003070:28315795-28315995	1.000000	200
chrI-NC_003070:3664090-3664290	1.000000	200
chrIV-NC_003075:13685900-13686100	1.000000	200
chrIV-NC_003075:12379981-12380181	1.000000	200
chrIV-NC_003075:14141422-14141622	1.000000	200
chrIV-NC_003075:14863096-14863296	1.000000	200
chrIV-NC_003075:14118209-14118409	1.000000	200
chrIV-NC_003075:272143-272343	1.000000	200
chrIV-NC_003075:16613081-16613281	1.000000	200
chrIV-NC_003075:16656874-16657074	1.000000	200
chrIV-NC_003075:2661596-2661796	1.000000	200
chrIV-NC_003075:16860561-16860761	1.000000	200
chrIV-NC_003075:7349242-7349442	1.000000	200
chrIV-NC_003075:13023617-13023817	1.000000	200
chrIV-NC_003075:17736542-17736742	1.000000	200
chrIV-NC_003075:6906145-6906345	1.000000	200
chrIV-NC_003075:12051681-12051881	1.000000	200
chrIV-NC_003075:15231300-15231500	1.000000	200
chrIV-NC_003075:7369585-7369785	1.000000	200
chrV-NC_003076:2303219-2303419	1.000000	200
chrV-NC_003076:5177754-5177954	1.000000	200
chrV-NC_003076:24836685-24836885	1.000000	200
chrV-NC_003076:588900-589100	1.000000	200
chrV-NC_003076:7524647-7524847	1.000000	200
chrV-NC_003076:25086812-25087012	1.000000	200
chrV-NC_003076:8359800-8360000	1.000000	200
chrV-NC_003076:23840693-23840893	1.000000	200
chrV-NC_003076:7673076-7673276	1.000000	200
chrV-NC_003076:900190-900390	1.000000	200
chrV-NC_003076:25972709-25972909	1.000000	200
chrV-NC_003076:25900220-25900420	1.000000	200
chrV-NC_003076:20014837-20015037	1.000000	200
chrV-NC_003076:26786389-26786589	1.000000	200
chrV-NC_003076:7960250-7960450	1.000000	200
chrV-NC_003076:2027935-2028135	1.000000	200
chrV-NC_003076:18358999-18359199	1.000000	200
chrV-NC_003076:21437588-21437788	1.000000	200
chrV-NC_003076:8376552-8376752	1.000000	200
chrV-NC_003076:75167-75367	1.000000	200
chrV-NC_003076:1855774-1855974	1.000000	200
chrV-NC_003076:26805534-26805734	1.000000	200
chrV-NC_003076:15997367-15997567	1.000000	200
chrV-NC_003076:448654-448854	1.000000	200
chrV-NC_003076:266618-266818	1.000000	200
chrV-NC_003076:24476843-24477043	1.000000	200

Command line summary

meme 1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events.100bp.fasta -maxw 10 -dna -nmotifs 10 -maxsize 200000 -o meme-1-organelles-nucleus-merged-gFLM-GFP-replicate-2-DP28-GSM1167549.36mers.unique-gem.v2.2_GEM_events

Letter frequencies in dataset

A: 0.307 C: 0.192 G: 0.192 T: 0.309

Background letter frequencies (from dataset with add-one prior applied):

A: 0.307 C: 0.192 G: 0.192 T: 0.309

Stopping Reason

Stopped because nmotifs = 10 reached. Program ran on pongo.

show model parameters...

Model parameters

host                  = pongo
type                  = zoops
nmotifs               = 10
evalue_threshold      = inf
object_function       = E-value of product of p-values
min_width             = 8
max_width             = 10
minic                 = 0.00
wg                    = 11
ws                    = 1
endgaps               = yes
minsites              = 2
maxsites              = 334
wnsites               = 0.8
prob                  = 1
spmap                 = uni
spfuzz                = 0.5
prior                 = dirichlet
beta                  = 0.01
maxiter               = 50
distance              = 1e-05
num_sequences         = 334
num_positions         = 66800
seed                  = 0
seqfrac               = 1
strands               = forward
priors_file           = 
reason_for_stopping   = Stopped because nmotifs = 10 reached.

Explanation of MEME Results

Top

The MEME results consist of

The overview of all discovered motifs.
Information on each of the motifs MEME discovered, including:
1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
2. A sequence LOGO.
3. Downloadable LOGO files suitable for publication.
4. A regular expression describing the motif.
5. Some further analysis that can be performed on the motif.
6. A list of data formats describing the motif.
7. The contributing sites of the motif sorted by p-value and aligned with each other.
8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
The version of MEME and the date it was released.
The reference to cite if you use MEME in your research.
A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
The command line summary detailing the parameters with which you ran MEME.
The reason why MEME stopped and the name of the CPU on which it ran.
This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value: The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width: The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites: The number of sites contributing to the construction of the motif.
Log Likelihood Ratio: The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content: The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy: The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).

Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

Firefox 3.5 and above
Safari 4 and above
Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by

            height = f(a,i) * R(i)                              (3)

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS	COLOR
A	RED
C	BLUE
G	ORANGE
T	GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS	COLOR	PROPERTIES
A, C, F, I, L, V, W and M	BLUE	Most hydrophobic[Kyte and Doolittle, 1982]
NQST	GREEN	Polar, non-charged, non-aliphatic residues
DE	MAGENTA	Acidic
KR	RED	Positively charged
H	PINK
G	ORANGE
P	YELLOW
Y	TURQUOISE

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation: Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC: Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format: The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width: The width of the generated image in centimetres.
Height: The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST: Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO: Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM: Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO: Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS: Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.

Data Formats

The extracted data is avaliable in the following formats.

PSPM Format: The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format: The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format: For use with BLOCKS tools.
FASTA Format: The FASTA format as described here.
Raw Format: Just the sites of the sequences that contributed to the motif. One site per line.

Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.