#			1---DP103-1-FLMbeta-GFP-GSM1167541	1---DP103-3-FLMbeta-GFP-GSM1167547	1---DP104-1-FLMdelta-GFP-GSM1167543	1---DP104-4-FLMdelta-GFP-GSM1167544	1---DP96-1-FLMbeta-control-GSM1167540	1---DP96-4-FLMbeta-control-GSM1167546	1---DP97-1-FLMdelta-control-GSM1167542	1---DP97-4-FLMdelta-control-GSM1167545	1---FLM-control-3-DP34-GSM1167553	1---gFLM-GFP-replicate-1-DP28-GSM1167551	1---gFLM-GFP-replicate-2-DP28-GSM1167549	1---gFLM-GFP-replicate-3-DP28-GSM1167552	1---gFLM-control-1-DP34-GSM1167550	1---gFLM-control-2-DP34-GSM1167548	10---Col-ChIP-GSM958792	10---Col-ChIP-replicate-2-GSM958794	10---NRPE1-ChIP-GSM958793	10---NRPE1-ChIP-dms3-mutant-GSM958797	10---NRPE1-ChIP-drd1-mutant-GSM958796	10---NRPE1-ChIP-rdm1-mutant-GSM958798	10---NRPE1-ChIP-replicate-2-GSM958795	11---Col-0-ChIP-Seq-GSM865710	11---PIF4-ChIP-Seq-GSM865709	12---APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586	12---PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585	12---negative-control-AP1-GR-ap1-cal-GSM940587	13---REVOLUTA-GSM657970	13---REVOLUTA-ctr-GSM657971	14---H3-dividing-rep1-GSM897704	14---H3-dividing-rep2-GSM897705	14---H3-non-dividing-rep1-GSM897714	14---H3-non-dividing-rep2-GSM897717	14---H3.1-dividing-rep1-GSM897702	14---H3.1-dividing-rep2-GSM897703	14---H3.1-non-dividing-rep1-GSM897710	14---H3.1-non-dividing-rep2-GSM897713	14---H3.3-dividing-rep1-GSM897700	14---H3.3-dividing-rep2-GSM897701	14---H3.3-non-dividing-rep1-GSM897708	14---H3.3-non-dividing-rep2-GSM897709	14---IgG-dividing-rep1-GSM897706	14---IgG-dividing-rep2-GSM897707	14---IgG-non-dividing-rep1-GSM897720	14---IgG-non-dividing-rep2-GSM897722	15---PIF5ox-input-GSM861509	15---PIF5ox-shade-ChIPSeq-GSM861508	16---TOC1_ChIPSeq-GSM878068	16---input-DNA-GSM878069	17---HTR13-Myc-ChIP-seq-GSM856055	17---HTR5-Myc-ChIP-seq-GSM856054	17---input-genomic-DNA-for-HTR13-GSM856057	17---input-genomic-DNA-for-HTR5-GSM856056	18---FHY3-Dark-GSM761689	18---FHY3-Far-Red-GSM761690	19---LEAFY-ctrl-rep1-GSM605654	19---LEAFY-ctrl-rep2-GSM605655	19---LEAFY-samp-rep1-GSM605656	19---LEAFY-samp-rep2-GSM605657	2---AGAMOUS-GFP-AP1-GR-ap1-cal-Rep1-GSM1120014	2---AGAMOUS-GFP-AP1-GR-ap1-cal-Rep2-GSM1120015	2---negative-control-AP1-GR-ap1-cal-Rep1-GSM1120016	2---negative-control-AP1-GR-ap1-cal-Rep2-GSM1120017	20---H3K4me3_ChIPSeq-GSM554340	20---H3K9ac_ChIPseq-GSM554339	20---H3_ChIPseq-GSM554341	21---AMS_ChIPSeq-GSM424618	22---APETALA2-chip_rep1-GSM532325	22---APETALA2-chip_rep2-GSM532326	22---APETALA2-ctrl_rep1-GSM532327	22---APETALA2-ctrl_rep2-GSM532328	23---APETALA1-GR_2h_induced_sample_1-GSM506208	23---APETALA1-GR_2h_induced_sample_2-GSM506209	23---APETALA1-GR_uninduced_control_1-GSM506210	23---APETALA1-GR_uninduced_control_2-GSM506211	24---SEPALLATA3-ChIPSeq_ag_3-GSM364943	24---SEPALLATA3-ChIPSeq_sep3_3-GSM364941	24---SEPALLATA3-ChIPSeq_wt_1-GSM364939	24---SEPALLATA3-ChIPSeq_wt_2-GSM364940	24---SEPALLATA3-ChIPSeq_wt_3-GSM364942	3---NRPD1-Columbia-ChIP-GSM1103230	3---NRPD1-Columbia-ChIP-replicate-2-GSM1103232	3---NRPD1-shh1-PolIV-ChIP-replicate-2-GSM1103234	3---PolIV-ChIP-GSM1103231	3---PolIV-ChIP-replicate-2-GSM1103233	4---SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.unique.chr-RPM	4---SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.unique.chr-RPM	4---SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.unique.chr-RPM	4---SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.unique.chr-RPM	4---SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.unique.chr-RPM	4---SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.unique.chr-RPM	5---gSOC1-GFP-replicate-1-GSM1116506.unique.chr-RPM	5---gSOC1-GFP-replicate-2-GSM1116508.unique.chr-RPM	5---gSOC1-GFP-replicate-3-GSM1116510.unique.chr-RPM	5---gSOC1-negative-1-GSM1116505.unique.chr-RPM	5---gSOC1-negative-2-GSM1116507.unique.chr-RPM	5---gSOC1-negative-3-GSM1116509.unique.chr-RPM	6---PIF3-P3M-ChIP-1-GSM958269.unique.chr-RPM	6---PIF3-P3M-ChIP-2-GSM958270.unique.chr-RPM	6---PIF3-P3M-ChIP-3-GSM958271.unique.chr-RPM	6---PIF3-P3M-ChIP-4-GSM958272.unique.chr-RPM	6---PIF3-WT-negative-ChIP-1-GSM958273.unique.chr-RPM	6---PIF3-WT-negative-ChIP-2-GSM958274.unique.chr-RPM	6---PIF3-WT-negative-ChIP-3-GSM958275.unique.chr-RPM	6---PIF3-WT-negative-ChIP-4-GSM958276.unique.chr-RPM	7---Col-0-H3-rep1-GSM1009228	7---Col-0-H3-rep2-GSM1009229	7---Col-0-Mnase-GSM941537	7---nrpe1-H3-rep1-GSM1009230	7---nrpe1-H3-rep2-GSM1009231	7---nrpe1-Mnase-GSM941538	8---CHROMOMETHYLASE3_ChIPseq-GSM956128	8---Col_ChIPseq-GSM956129	9---AGO4-ChIP-GSM867184	9---AGO4-input-GSM867185	9---WT_AGO4-ChIP-GSM867182	9---WT_AGO4-input-GSM867183	9---nrpe1_AGO4_ChIP-GSM867186	9---nrpe1_AGO4_ChIP-input-GSM867187
chloroplast	1	154478	72189.717136	65457.1364095	93075.7337896	85993.062608	111971.755839	71661.6509798	125677.881345	92449.3654672	121562.779366	91762.7287154	59897.6927187	134924.017058	117933.824792	84102.1021894	69314.066977	101599.416812	79776.1444594	81152.3380791	75563.2295523	159193.634388	155990.294313	228290.12919	131888.758305	33479.5134336	37610.3414384	54931.9868957	157182.035695	166508.665409	281.858338898	2074.3985374	2483.95151545	5124.79367629	1434.23290957	4631.1914201	960.344385558	7921.06118566	1072.61604783	3667.6202008	1743.24828207	4708.93722439	35681.739654	51792.6480842	264872.187537	73353.2290211	70358.238351	54893.9389854	21316.5425298	92084.8016448	596.379495514	337.981062907	100133.227785	81145.9109841	442479.124949	497011.969027	11638.7563062	342643.637712	4082.96135022	68926.1151478	64901.4366366	34349.2361752	54931.9868957	40471.8444669	22613.8106131	1803.11277545	1442.25059878	60983.9700361	15865.50087	19953.5449436	13109.4071646	19951.8001406	28845.1844499	27520.7384594	51375.0771474	45004.3828512	36942.2702915	76015.5533925	NaN	24039.9601322	65210.1031259	148678.018325	73988.3502816	68270.5564669	124519.64434	95532.6563663	82433.8108876	57421.4016634	39048.8752165	20661.5640109	10209.3011705	15931.9174504	125006.764875	62334.2350874	248797.181136	170912.524808	117505.039137	248849.023504	124854.382709	86932.7134067	113465.46215	58007.3719301	123393.919782	79118.4150618	115198.28461	52817.0325296	325.243685002	121.837686012	6968.00331042	1306.78847438	245.965161471	2732.58604054	285492.819294	240160.664281	24538.3826146	48180.012965	20677.6813335	45564.6127346	25149.42339	51793.6168647
chrI-NC_003070	1	30427671	238992.671043	240289.667973	232506.837345	232683.166567	226164.324461	236190.373736	224776.268657	231528.838063	222682.277562	237613.238896	245116.812047	222081.32406	227790.912556	232723.531206	228839.294751	215113.344319	225936.436579	227598.954304	227697.712389	208123.646522	203514.516517	187950.12525	223292.398911	239014.286613	239469.025517	234126.139627	207391.599938	204339.476192	191375.873183	230985.392282	244480.831493	236078.764177	231805.253236	242830.490911	216748.179924	240131.454502	247365.472129	253301.107484	254560.24185	256444.773374	195159.455489	225865.197727	159361.694967	226961.388776	225701.816164	238528.32204	240553.642309	219918.723547	233622.687265	257799.294865	218675.171704	226065.867567	139243.189619	122599.765077	241030.428465	159936.781607	250485.452186	246468.554868	229014.516961	240225.025144	234126.139627	234424.475315	246509.640281	265505.447939	243463.594451	230450.292674	229677.938968	235281.731834	230943.685134	238804.998352	245549.860869	249107.407171	226016.606361	234081.584359	246881.682613	223542.623125	NaN	251117.721534	237361.395109	210507.746725	235438.916928	235759.339351	214158.930619	226935.616057	224512.168735	224687.048734	232994.126144	234955.72522	230082.799844	229026.599164	225387.582216	247713.501454	192111.379891	206547.95374	232464.752209	188728.758741	208399.791774	217608.100412	216437.306916	227774.654997	207669.186584	219999.1617	217693.866095	228247.23073	236122.005123	203042.38887	231364.81357	237743.884789	235988.265001	225343.050834	156264.386847	179027.869047	241243.629018	236496.24607	233729.645272	236337.5635	231813.169211	235962.561818
chrII-NC_003071	1	19698289	145414.536218	147578.596032	142700.06906	145759.640205	139415.522011	146770.496826	136336.079651	142875.191727	140637.058024	143009.843183	144135.181422	138994.271094	140090.05856	142886.320771	149328.49261	143515.778175	148726.506774	144342.638659	145592.864901	126258.105148	140107.965284	119889.667595	134378.406978	149976.90031	149193.70663	152408.680122	131018.029876	129418.839756	159976.4369	166764.502585	157033.317759	164500.255087	159821.66687	161335.541682	158820.440162	160630.864077	155211.586095	154711.038397	151037.742547	152754.208148	153094.64683	155508.870835	107992.696431	151191.788584	147721.321004	150934.698722	158366.169618	147704.739538	170805.857553	156868.214264	142838.076706	146072.87517	86935.2434542	76830.4013851	158730.045768	103238.016221	154398.384947	143253.561208	155825.164864	153361.054521	152408.680122	152569.299027	150629.697594	151271.379577	163528.842685	150360.545765	159111.102909	159990.851013	159133.773686	156536.572529	162870.34525	165006.699303	156926.741716	166960.63433	151462.743539	150000.84063	NaN	153764.926364	151330.773195	133040.496458	149529.150523	151720.949193	143523.202599	149934.407734	148050.540246	149480.309442	160572.027993	163662.815762	164434.827444	164508.42401	132373.262329	144106.801844	117368.740706	127402.1931	135074.060359	117625.513262	140642.229268	143778.287446	141634.810824	147590.405517	139701.235618	145237.605391	138666.528374	146930.273906	169238.254063	172682.367315	164130.675128	167858.311821	166171.051643	164283.184902	117642.769623	121320.806069	151498.6208	143664.580597	165140.421835	154951.114269	162062.41303	151952.5363
chrIII-NC_003074	1	23459830	183492.05133	185209.834421	178771.62259	180919.259415	175549.187661	184647.848434	171629.286772	178905.935123	173235.776757	178489.45034	187648.230718	168924.011118	173497.058607	181955.303586	188553.774511	179288.117455	183750.308392	182894.11867	183962.467947	158247.939702	167233.855592	149605.111318	170708.442144	188118.389215	185087.90741	177301.245328	156853.107566	155364.058164	225141.571216	216129.474501	211508.111071	210780.612982	216195.940158	207990.70051	215786.815967	208908.530953	209844.674546	209500.87128	209046.883962	204620.324846	226882.843709	199864.560069	160522.861518	189246.69175	191785.245763	190320.709877	202308.438614	187018.351308	211168.006033	203238.087493	180971.394821	183925.117045	107447.209027	94027.73469	209835.908074	130956.099027	205607.355596	182697.972408	169999.454882	189260.243529	177301.245328	186770.923906	201774.716573	200713.419283	204478.927543	187478.848772	219582.664729	208679.069545	214954.122348	203024.754536	187555.864637	184733.423949	185530.849892	184028.090243	189382.676812	187105.085115	NaN	190653.392801	180840.246261	164962.226171	181640.570092	183137.991694	172047.481638	177820.414213	184830.145078	195994.066304	196127.876478	203006.41825	215558.137308	211081.654312	171991.073973	185590.070593	143121.898329	160100.819131	174393.878316	142558.89699	175304.75554	192322.63907	177664.656499	200491.868442	177791.689468	192837.906284	177256.6481	206603.493276	210989.047126	238826.293384	214503.333457	208033.101623	211766.815019	219040.685192	138421.756753	145130.381508	192947.727924	195088.239755	203340.644898	192936.151929	203973.147757	191151.228929
chrIV-NC_003075	1	18585056	140987.270162	141635.415388	138132.099528	139273.186322	134217.5264	141418.180059	131816.268223	137571.821041	134259.916631	137334.877054	140249.352154	131238.89637	133590.238009	137947.684122	142341.864456	135371.664918	138038.978787	138739.266825	139595.920858	124378.158305	125518.010149	110110.613865	131217.091086	143675.880349	141510.011723	138290.511702	103522.750505	103178.897794	178700.915558	158192.07419	158107.517068	157751.405909	161523.967534	155158.920051	171067.356837	155966.72072	157205.943621	150306.83474	155924.893629	152716.59105	163749.259956	148532.457752	110024.737896	144803.66888	145335.24349	146280.851884	152012.285845	140176.540578	158537.450972	151559.291922	136190.919567	139234.933911	83074.5395384	73168.597447	152527.894052	96458.1892638	155087.075114	139738.096887	134730.624374	144702.416008	138290.511702	142802.964566	152454.689425	153408.147532	157794.030268	143430.708195	149473.973449	151069.143389	151194.928264	150723.847439	147757.169852	149500.74306	139817.599293	148033.216346	149697.787594	140090.103931	NaN	152060.1557	144323.641381	127755.6804	141129.856194	142593.2127	132487.149706	138229.283314	140559.997357	143692.298303	151117.477918	154917.426334	156389.351277	157472.76859	127839.89436	139567.883008	109600.284834	119919.125268	131542.055006	109849.369049	129471.509692	133341.791282	132851.961302	137231.17329	129505.439396	135122.070308	130473.916037	136587.947285	157956.48762	161387.378213	158450.628724	158692.646281	159291.669464	162871.276375	112019.87929	112683.55532	161207.421851	150304.302277	154677.810292	148355.956728	155756.625127	146490.385681
chrM	1	366924	6152.81434452	6406.21964536	7870.41192602	7063.18613175	9366.06238731	7716.36320155	9895.67659939	9869.63056197	7576.26359299	3411.15276069	9395.64307791	5834.76389032	5016.5293125	13081.9605165	12384.8845062	27072.8482912	17726.9403948	19147.4207126	21624.607236	34078.8618834	20596.8654408	31408.7083791	13465.7178304	29404.759821	32803.3348125	34852.0704873	12880.2460146	14134.2018331	1698.05203143	2771.58189323	2437.40667316	2620.02568395	2407.21088177	2244.57534336	1984.82913545	3015.91178579	1280.42441804	1524.96398772	1824.33759949	1388.45672095	24994.7969602	6354.14995818	41288.7265873	6234.32562782	9053.46004359	4068.63119081	6078.91061647	9732.68892116	2374.17155697	636.087059403	20500.515911	17315.1330407	16670.8336641	27291.1856402	3760.89004766	21848.1615906	1578.29934658	4376.20310902	42292.3333073	22252.4534003	34852.0704873	28877.616672	3006.46037053	194.32373753	1114.71465834	16615.6704847	11989.2127371	7559.2681801	11637.0255501	10309.6233311	12289.9996679	6075.94360003	37072.7394293	8635.38344115	8811.87328133	17894.4018107	NaN	5517.60762567	8384.17590699	20607.9994237	7050.66332589	7187.4702068	14652.522335	7335.13003895	15773.5750914	19667.4256049	4973.36237572	2742.06119438	4383.46092186	3983.7682901	19554.0955453	4466.18727181	19252.4297391	31356.5913495	7448.12012015	24928.5662461	31737.6912211	28698.621945	21900.0451957	23525.431086	32405.7445305	27740.6426309	24678.2732063	22468.1996783	1760.28008797	4158.25666276	4755.97260015	1777.44298815	2033.72747806	4206.88122288	38753.4287905	39280.9431767	2271.65854346	8841.60177832	2906.35029299	5817.32654292	3608.69764203	8240.42090399
chrV-NC_003076	1	26975502	212770.939767	213423.130131	206943.225762	208308.498752	203315.62124	211595.086764	199868.538753	206799.218016	200045.928067	208378.709052	213557.087862	198002.71641	202081.378163	207303.097608	209237.622189	198038.830029	206044.684614	206125.26275	205963.197116	189719.654052	187038.492704	172745.644403	195049.184745	216330.270258	214325.67247	208089.365838	231152.230406	227055.860852	242825.292773	223082.576012	223948.86442	223144.142485	226811.72841	225808.580084	234632.033589	223425.456776	228019.283143	226987.563909	225862.65213	227366.708637	200437.257402	212082.115574	155937.095064	208208.907361	210044.675185	214972.847302	219364.010467	203364.154463	222895.447124	229561.043334	200690.693506	206240.162284	124149.859749	109070.346734	222476.077288	144919.114578	228760.47146	214539.496372	203236.468974	215849.571222	208089.365838	214082.876048	223010.985144	227104.169156	228177.639795	210679.964073	214299.606338	217466.391096	219027.057854	220648.403673	215131.575273	218055.044457	203260.386161	213256.708429	216820.96587	205351.391996	NaN	222846.235843	212549.665021	194447.832497	211222.492656	211330.480387	198611.068762	204212.492276	203839.762605	209057.449948	215166.253874	220053.989229	218942.122033	217994.868184	197847.326702	216221.320742	169748.085366	183760.792604	201572.094852	167459.872208	189589.639796	197317.846438	196045.757114	205379.094738	189532.784622	199944.198625	196032.483578	206345.822596	223608.682295	219781.477869	219826.573211	224587.824023	224502.506234	221522.335433	151404.959401	162395.780598	226292.559248	217425.016558	219527.446077	216037.274297	217636.523843	214409.249503