cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep1-GSM1618741.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_rep2-GSM1618742.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep1-GSM1618745.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_rep2-GSM1618746.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_mock_14h_rep2-GSM1618749.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_mock_14h_rep2-GSM1618749.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_Bc_14h_rep2-GSM1618750.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_Bc_14h_rep2-GSM1618750.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &