cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_mock_14h_rep1-GSM1618741.36mers.bam SAMstats-WK33-HA_mock_14h_rep1-GSM1618741 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_mock_14h_rep2-GSM1618742.36mers.bam SAMstats-WK33-HA_mock_14h_rep2-GSM1618742 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.bam SAMstats-WK33-HA_mock_14h_input_rep1-GSM1618743 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.bam SAMstats-WK33-HA_mock_14h_input_rep2-GSM1618744 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_Bc_14h_rep1-GSM1618745.36mers.bam SAMstats-WK33-HA_Bc_14h_rep1-GSM1618745 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_Bc_14h_rep2-GSM1618746.36mers.bam SAMstats-WK33-HA_Bc_14h_rep2-GSM1618746 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.bam SAMstats-WK33-HA_Bc_14h_input_rep1-GSM1618747 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.bam SAMstats-WK33-HA_Bc_14h_input_rep2-GSM1618748 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WT_mock_14h_rep2-GSM1618749.36mers.bam SAMstats-WT_mock_14h_rep2-GSM1618749 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/WT_Bc_14h_rep2-GSM1618750.36mers.bam SAMstats-WT_Bc_14h_rep2-GSM1618750 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools