cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_mock_14h_rep1-GSM1618741.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_mock_14h_rep1-GSM1618741.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_mock_14h_rep2-GSM1618742.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_mock_14h_rep2-GSM1618742.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_mock_14h_input_rep1-GSM1618743.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_mock_14h_input_rep2-GSM1618744.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_Bc_14h_rep1-GSM1618745.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_Bc_14h_rep1-GSM1618745.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_Bc_14h_rep2-GSM1618746.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_Bc_14h_rep2-GSM1618746.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_Bc_14h_input_rep1-GSM1618747.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WK33-HA_Bc_14h_input_rep2-GSM1618748.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT_mock_14h_rep2-GSM1618749.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WT_mock_14h_rep2-GSM1618749.36mers.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/67-organelles-nucleus-merged-k3m2/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT_Bc_14h_rep2-GSM1618750.36mers.bam -p=16 -savp -rf -s=-0:2:400 -out=WT_Bc_14h_rep2-GSM1618750.36mers.QC &