cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_GFP-Trap-GSM1701078.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_Wt-_anti-TRB1-GSM1701080.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &