cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TRB1_Wt-_GFP-Trap-GSM1701078.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=TRB1_Wt-_GFP-Trap-GSM1701078.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=TRB1_TRB1-GFP+_GFP-Trap-GSM1701079.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TRB1_Wt-_anti-TRB1-GSM1701080.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=TRB1_Wt-_anti-TRB1-GSM1701080.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/66-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=TRB1_TRB1+_anti-TRB1-GSM1701081.36mers.QC