cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_Input_ExpI-GSM1196645.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_Input_ExpI-GSM1196645.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_IP_ExpI-GSM1196646.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_IP_ExpI-GSM1196646.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_PRR7_HA-PRR7_151_Input_ExpI-GSM1196647.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_PRR7_HA-PRR7_151_Input_ExpI-GSM1196647.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_PRR7_HA-PRR7_151_IP_ExpI-GSM1196648.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_PRR7_HA-PRR7_151_IP_ExpI-GSM1196648.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_PRR7_HA-PRR7_151_IP_ExpII-GSM1196649.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_PRR7_HA-PRR7_151_IP_ExpII-GSM1196649.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=prr7-3_IP_ExpII-GSM1196650.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=prr7-3_IP_ExpII-GSM1196650.36mers.QC