cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_Input_ExpI-GSM1196645.36mers.bam SAMstats-prr7-3_Input_ExpI-GSM1196645 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_IP_ExpI-GSM1196646.36mers.bam SAMstats-prr7-3_IP_ExpI-GSM1196646 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_PRR7_HA-PRR7_151_Input_ExpI-GSM1196647.36mers.bam SAMstats-prr7-3_PRR7_HA-PRR7_151_Input_ExpI-GSM1196647 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_PRR7_HA-PRR7_151_IP_ExpI-GSM1196648.36mers.bam SAMstats-prr7-3_PRR7_HA-PRR7_151_IP_ExpI-GSM1196648 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_PRR7_HA-PRR7_151_IP_ExpII-GSM1196649.36mers.bam SAMstats-prr7-3_PRR7_HA-PRR7_151_IP_ExpII-GSM1196649 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/65-organelles-nucleus-merged-k3m2/prr7-3_IP_ExpII-GSM1196650.36mers.bam SAMstats-prr7-3_IP_ExpII-GSM1196650 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools