cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Input-GSM1833650.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_PRR9_HA-PRR9_CCR2_LUC_109_Immunoprecipitated-GSM1833651.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Input-GSM1833652.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/63/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes prr9-1_CCR2_LUC_Immunoprecipitated-GSM1833653.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &