cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_1-GSM1463808.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_1-GSM1463808.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_BLJ_YFP_2-GSM1463810.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_BLJ_YFP_2-GSM1463810.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_1-GSM1463812.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_1-GSM1463812.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_JKD_YFP_2-GSM1463814.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_JKD_YFP_2-GSM1463814.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === At_Control-GSM1463816.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes At_Control-GSM1463816.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &