cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=At_BLJ_YFP_1-GSM1463808.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=At_BLJ_YFP_1-GSM1463808.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=At_BLJ_YFP_2-GSM1463810.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=At_BLJ_YFP_2-GSM1463810.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=At_JKD_YFP_1-GSM1463812.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=At_JKD_YFP_1-GSM1463812.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=At_JKD_YFP_2-GSM1463814.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=At_JKD_YFP_2-GSM1463814.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=At_Control-GSM1463816.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=At_Control-GSM1463816.36mers.QC