cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/At_BLJ_YFP_1-GSM1463808.36mers.bam SAMstats-At_BLJ_YFP_1-GSM1463808 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/At_BLJ_YFP_2-GSM1463810.36mers.bam SAMstats-At_BLJ_YFP_2-GSM1463810 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/At_JKD_YFP_1-GSM1463812.36mers.bam SAMstats-At_JKD_YFP_1-GSM1463812 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/At_JKD_YFP_2-GSM1463814.36mers.bam SAMstats-At_JKD_YFP_2-GSM1463814 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/62-organelles-nucleus-merged-k3m2/At_Control-GSM1463816.36mers.bam SAMstats-At_Control-GSM1463816 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools