cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL1-GSM1808449.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL2-GSM1808450.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LL3-GSM1808451.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD1-GSM1808452.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_LD2-GSM1808453.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_ZT14-GSM1808454.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes CCA1_ChIPSeq_Input-GSM1808455.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast