cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL1-GSM1808449.36mers.bam SAMstats-CCA1_ChIPSeq_LL1-GSM1808449 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL2-GSM1808450.36mers.bam SAMstats-CCA1_ChIPSeq_LL2-GSM1808450 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LL3-GSM1808451.36mers.bam SAMstats-CCA1_ChIPSeq_LL3-GSM1808451 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD1-GSM1808452.36mers.bam SAMstats-CCA1_ChIPSeq_LD1-GSM1808452 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_LD2-GSM1808453.36mers.bam SAMstats-CCA1_ChIPSeq_LD2-GSM1808453 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_ZT14-GSM1808454.36mers.bam SAMstats-CCA1_ChIPSeq_ZT14-GSM1808454 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/61-organelles-nucleus-merged-k3m2/CCA1_ChIPSeq_Input-GSM1808455.36mers.bam SAMstats-CCA1_ChIPSeq_Input-GSM1808455 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools