cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP1-GSM1429897.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP1-GSM1429897.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP2-GSM1429898.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP2-GSM1429898.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === RGA_ChIP3-GSM1429899.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes RGA_ChIP3-GSM1429899.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP1-GSM1429900.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP1-GSM1429900.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP2-GSM1429901.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP2-GSM1429901.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === WT_ChIP3-GSM1429902.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes WT_ChIP3-GSM1429902.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &