cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/RGA_ChIP1-GSM1429897.36mers.bam SAMstats-RGA_ChIP1-GSM1429897 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/RGA_ChIP2-GSM1429898.36mers.bam SAMstats-RGA_ChIP2-GSM1429898 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/RGA_ChIP3-GSM1429899.36mers.bam SAMstats-RGA_ChIP3-GSM1429899 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/WT_ChIP1-GSM1429900.36mers.bam SAMstats-WT_ChIP1-GSM1429900 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/WT_ChIP2-GSM1429901.36mers.bam SAMstats-WT_ChIP2-GSM1429901 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/59-organelles-nucleus-merged-k3m2/WT_ChIP3-GSM1429902.36mers.bam SAMstats-WT_ChIP3-GSM1429902 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools