cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-BBM-YFP-GSM1264686.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-BBM-YFP-GSM1264686.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pBBM-NLS-GFP-GSM1264687.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pBBM-NLS-GFP-GSM1264687.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GFP-GSM1264688.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GFP-GSM1264688.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === 35S-BBM-GSM1264689.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes 35S-BBM-GSM1264689.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &