cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/pBBM-BBM-YFP-GSM1264686.36mers.bam SAMstats-pBBM-BBM-YFP-GSM1264686 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/pBBM-NLS-GFP-GSM1264687.36mers.bam SAMstats-pBBM-NLS-GFP-GSM1264687 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/35S-BBM-GFP-GSM1264688.36mers.bam SAMstats-35S-BBM-GFP-GSM1264688 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/57-organelles-nucleus-merged-k3m2/35S-BBM-GSM1264689.36mers.bam SAMstats-35S-BBM-GSM1264689 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools