cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM &