cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.bam SAMstats-pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep1-GSM1325791.36mers.bam SAMstats-SVP_FLC_FRI_rep1-GSM1325791 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep2-GSM1325792.36mers.bam SAMstats-SVP_FLC_FRI_rep2-GSM1325792 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep3-GSM1325793.36mers.bam SAMstats-SVP_FLC_FRI_rep3-GSM1325793 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep1-GSM1325794.36mers.bam SAMstats-svp-41_FLC_FRI_rep1-GSM1325794 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep2-GSM1325795.36mers.bam SAMstats-svp-41_FLC_FRI_rep2-GSM1325795 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep3-GSM1325796.36mers.bam SAMstats-svp-41_FLC_FRI_rep3-GSM1325796 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.bam SAMstats-Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.bam SAMstats-Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools