python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep1-GSM1325785.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep2-GSM1325786.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_FLC_FRI_rep3-GSM1325787.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep1-GSM1325788.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep2-GSM1325789.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/pSVP-SVP-GFP_svp-41_flc-3_FRI_rep3-GSM1325790.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/SVP_FLC_FRI_rep1-GSM1325791.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep1-GSM1325791.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep1-GSM1325791.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/SVP_FLC_FRI_rep2-GSM1325792.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep2-GSM1325792.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep2-GSM1325792.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/SVP_FLC_FRI_rep3-GSM1325793.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep3-GSM1325793.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/SVP_FLC_FRI_rep3-GSM1325793.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/svp-41_FLC_FRI_rep1-GSM1325794.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep1-GSM1325794.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep1-GSM1325794.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/svp-41_FLC_FRI_rep2-GSM1325795.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep2-GSM1325795.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep2-GSM1325795.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/svp-41_FLC_FRI_rep3-GSM1325796.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep3-GSM1325796.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/svp-41_FLC_FRI_rep3-GSM1325796.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep1-GSM1325797.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep2-GSM1325798.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_SVP-ChIPSeq_35S-GFP_rep3-GSM1325799.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep1-GSM1325800.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep2-GSM1325801.36mers
python /N/dc2/projects/marinovg/code/MergeBAMPerChr.py samtools /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.unique.bam chrIII-NC_003074,chrII-NC_003071,chrI-NC_003070,chrIV-NC_003075,chrV-NC_003076 /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers.k3m2.bam chrM,chloroplast  | samtools view -bT /N/dc2/projects/marinovg/genomes/TAIR10/sequence/TAIR10.fa - | samtools sort - /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/56-organelles-nucleus-merged-k3m2/Negative_Control_for_FLC-ChIPSeq_svp-41_flc-3_FRI_rep3-GSM1325802.36mers