cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=35S-SUC2-Input-rep1-GSM1419602.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=35S-SUC2-Input-rep1-GSM1419602.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=35S-SUC2-Input-rep2-GSM1419603.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=35S-SUC2-Input-rep2-GSM1419603.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=35S-SUC2-Myc-ChIP-rep1-GSM1419604.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=35S-SUC2-Myc-ChIP-rep1-GSM1419604.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=35S-SUC2-Myc-ChIP-rep2-GSM1419605.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=35S-SUC2-Myc-ChIP-rep2-GSM1419605.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=MBD7-5-Input-rep1-GSM1419606.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=MBD7-5-Input-rep1-GSM1419606.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=MBD7-5-Input-rep2-GSM1419607.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=MBD7-5-Input-rep2-GSM1419607.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=MBD7-5-Myc-ChIP-rep1-GSM1419608.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=MBD7-5-Myc-ChIP-rep1-GSM1419608.36mers.QC
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=MBD7-5-Myc-ChIP-rep2-GSM1419609.36mers.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=MBD7-5-Myc-ChIP-rep2-GSM1419609.36mers.QC