cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/35S-SUC2-Input-rep1-GSM1419602.36mers.bam SAMstats-35S-SUC2-Input-rep1-GSM1419602 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/35S-SUC2-Input-rep2-GSM1419603.36mers.bam SAMstats-35S-SUC2-Input-rep2-GSM1419603 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/35S-SUC2-Myc-ChIP-rep1-GSM1419604.36mers.bam SAMstats-35S-SUC2-Myc-ChIP-rep1-GSM1419604 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/35S-SUC2-Myc-ChIP-rep2-GSM1419605.36mers.bam SAMstats-35S-SUC2-Myc-ChIP-rep2-GSM1419605 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/MBD7-5-Input-rep1-GSM1419606.36mers.bam SAMstats-MBD7-5-Input-rep1-GSM1419606 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/MBD7-5-Input-rep2-GSM1419607.36mers.bam SAMstats-MBD7-5-Input-rep2-GSM1419607 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/MBD7-5-Myc-ChIP-rep1-GSM1419608.36mers.bam SAMstats-MBD7-5-Myc-ChIP-rep1-GSM1419608 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/; python /N/dc2/projects/marinovg/code/SAMstats.py /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/55-organelles-nucleus-merged-k3m2/MBD7-5-Myc-ChIP-rep2-GSM1419609.36mers.bam SAMstats-MBD7-5-Myc-ChIP-rep2-GSM1419609 -bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes samtools