cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-Input-SRX323556.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-Input-SRX323556.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-Input-SRX323555.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-Input-SRX323555.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/H3K27me3-SRX319031.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes H3K27me3-SRX319031.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/51/FIE-HA-SRX319030.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes FIE-HA-SRX319030.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM