cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/YFP-GSM1282365.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes YFP-GSM1282365.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py === /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/49/pHBI1-HBI1-YFP-GSM1282366.36mers.unique.bam /N/dc2/projects/marinovg/genomes/TAIR10/TAIR10.chrom.sizes pHBI1-HBI1-YFP-GSM1282366.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM