SAM Tools version 0.1.18 loaded.
OpenMPI libraries (GNU) version 1.6.3 loaded.
GMP arithmetic library version 5.1.1 loaded.
MPFR version 3.1.1 loaded.
Mpc version 1.0.1 loaded.
gcc version 4.9.2 loaded.
R version 3.1.1 loaded
Boost version 1.52.0 loaded.
Sun/Oracle Java SE Development Kit version 1.7.0_51 loaded.
testing for NH tags presence
file has NH tags
examining read multiplicty
5M alignments processed chrII-NC_003071 0 11704510 19698289
10M alignments processed chrIV-NC_003075 0 12387712 18585056
5M alignments processed in complexity calculation chrII-NC_003071 11704510 11704510 19698289
10M alignments processed in complexity calculation chrIV-NC_003075 12387696 12387712 18585056
Unique:	13738026
Unique Splices:	0
Multi:	0
Multi Splices:	0
Complexity:	0.45
Read Length, Minimum:	36
Read Length, Maximum:	36
Read Length, Average:	36.0