SAM Tools version 0.1.18 loaded.
OpenMPI libraries (GNU) version 1.6.3 loaded.
GMP arithmetic library version 5.1.1 loaded.
MPFR version 3.1.1 loaded.
Mpc version 1.0.1 loaded.
gcc version 4.9.2 loaded.
R version 3.1.1 loaded
Boost version 1.52.0 loaded.
Sun/Oracle Java SE Development Kit version 1.7.0_51 loaded.
testing for NH tags presence
file has NH tags
examining read multiplicty
5M alignments processed chrII-NC_003071 0 8523993 19698289
10M alignments processed chrI-NC_003070 0 27954157 30427671
15M alignments processed chrV-NC_003076 0 16485598 26975502
5M alignments processed in complexity calculation chrII-NC_003071 8523993 8523993 19698289
10M alignments processed in complexity calculation chrI-NC_003070 27954157 27954157 30427671
15M alignments processed in complexity calculation chrV-NC_003076 16485598 16485598 26975502
Unique:	16439895
Unique Splices:	0
Multi:	0
Multi Splices:	0
Complexity:	0.14
Read Length, Minimum:	36
Read Length, Maximum:	36
Read Length, Average:	36.0