SAM Tools version 0.1.18 loaded.
OpenMPI libraries (GNU) version 1.6.3 loaded.
GMP arithmetic library version 5.1.1 loaded.
MPFR version 3.1.1 loaded.
Mpc version 1.0.1 loaded.
gcc version 4.9.2 loaded.
R version 3.1.1 loaded
Boost version 1.52.0 loaded.
Sun/Oracle Java SE Development Kit version 1.7.0_51 loaded.
testing for NH tags presence
file has NH tags
examining read multiplicty
5M alignments processed chrIII-NC_003074 0 18742351 23459830
10M alignments processed chrI-NC_003070 0 1132179 30427671
15M alignments processed chrI-NC_003070 0 29236204 30427671
20M alignments processed chrV-NC_003076 0 4513979 26975502
5M alignments processed in complexity calculation chrIII-NC_003074 18742351 18742351 23459830
10M alignments processed in complexity calculation chrI-NC_003070 1132176 1132179 30427671
15M alignments processed in complexity calculation chrI-NC_003070 29236204 29236204 30427671
20M alignments processed in complexity calculation chrV-NC_003076 4513979 4513979 26975502
Unique:	24046073
Unique Splices:	0
Multi:	0
Multi Splices:	0
Complexity:	0.29
Read Length, Minimum:	36
Read Length, Maximum:	36
Read Length, Average:	36.0