cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF1-peaks-1-GSM1059957.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF1-peaks-1-GSM1059957.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF1-peaks-2-GSM1059958.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF1-peaks-2-GSM1059958.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF1-peaks-3-GSM1059959.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF1-peaks-3-GSM1059959.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-1-GSM1059960.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-1-GSM1059960.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-2-GSM1059961.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-2-GSM1059961.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-3-GSM1059962.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-3-GSM1059962.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF4-peaks-1-GSM1059963.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF4-peaks-1-GSM1059963.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF4-peaks-2-GSM1059964.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF4-peaks-2-GSM1059964.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PIF4-peaks-3-GSM1059965.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=PIF4-peaks-3-GSM1059965.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-1A-GSM1059966.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-1A-GSM1059966.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-2A-GSM1059967.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-2A-GSM1059967.36mers.k3m2.QC &
cd /N/dc2/projects/marinovg/2013-10-22-Arabidopsis/48-organelles-only/; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=WT-ChIP-3A-GSM1059968.36mers.k3m2.k3m2.bam -p=16 -savp -rf -s=-0:2:400 -out=WT-ChIP-3A-GSM1059968.36mers.k3m2.QC &