condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-1-GSM1247499.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-1-GSM1247499.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-2-GSM1247500.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-2-GSM1247500.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-GFP-replicate-3-GSM1247501.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-GFP-replicate-3-GSM1247501.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-1-GSM1247502.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-1-GSM1247502.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-2-GSM1247503.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-2-GSM1247503.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === JAG-wild-type-replicate-3-GSM1247504.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes JAG-wild-type-replicate-3-GSM1247504.36mers.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &