condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py ear1-ChIP-GSM957190.36mers.bam SAMstats-ear1-ChIP-GSM957190.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py ear1-Total_input-GSM957191.36mers.bam SAMstats-ear1-Total_input-GSM957191.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py tassel1-ChIP-GSM957186.36mers.bam SAMstats-tassel1-ChIP-GSM957186.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py tassel1-Total_input-GSM957187.36mers.bam SAMstats-tassel1-Total_input-GSM957187.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py tassel2_and_3-ChIP-GSM957188.36mers.bam SAMstats-tassel2_and_3-ChIP-GSM957188.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py tassel2_and_3-Total_input-GSM957189.36mers.bam SAMstats-tassel2_and_3-Total_input-GSM957189.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-ChIP-GSM957190.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-ChIP-GSM957190.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === ear1-Total_input-GSM957191.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes ear1-Total_input-GSM957191.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-ChIP-GSM957186.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-ChIP-GSM957186.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel1-Total_input-GSM957187.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel1-Total_input-GSM957187.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-ChIP-GSM957188.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-ChIP-GSM957188.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === tassel2_and_3-Total_input-GSM957189.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes tassel2_and_3-Total_input-GSM957189.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &