condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam SAMstats-Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam SAMstats-Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam SAMstats-Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam SAMstats-Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.k3m2 -bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_1-GSM945799.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_1-GSM945800.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-rr_14DAP_ChIP_2-GSM945801.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.bam /woldlab/castor/data00/home/georgi/genomes/Zea_mays.AGPv3/Zea_mays.AGPv3.chrom.sizes Pericarp_P-ww_14DAP_ChIP_2-GSM945802.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrP" &