condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-1-GSM1167536.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-1-GSM1167536.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-1.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-1.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-negative-2-GSM1167538.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-negative-2-GSM1167538.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === KAN1-FLAG-replicate-2-GSM1167539.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes KAN1-FLAG-replicate-2-GSM1167539.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &