# R script for Peak Model
#  -- generated by MACS
p <- c(0.0176909071294,0.0182533348127,0.0194804497581,0.0207075647035,0.0213722519656,0.0222925881746,0.0233663137518,0.0245934286972,0.0255137649063,0.0265363606941,0.0278657352183,0.0290417203742,0.0300131863727,0.0310357821605,0.0313425608969,0.0321606375271,0.0331832333149,0.0335411418407,0.0333877524725,0.0326208056316,0.0322628971059,0.032671935421,0.0322628971059,0.031751599212,0.0320583779483,0.0321606375271,0.0310869119499,0.0310357821605,0.0304733544772,0.0301665757409,0.0299109267939,0.0301154459515,0.0302177055302,0.0301154459515,0.0296041480576,0.0298597970045,0.0297575374257,0.0293996289,0.0295530182682,0.0296041480576,0.0292973693212,0.0285304224803,0.0284281629016,0.0281725139546,0.0275078266925,0.0274055671137,0.0272521777456,0.0273033075349,0.027967994797,0.0279168650076,0.0277123458501,0.0279168650076,0.0278657352183,0.0280191245864,0.0282747735334,0.0279168650076,0.0281725139546,0.0280702543758,0.0279168650076,0.0281213841652,0.0286326820591,0.0288883310061,0.0287860714273,0.0293484991106,0.0294507586894,0.0293996289,0.0297064076363,0.0294507586894,0.0299109267939,0.0293996289,0.0296041480576,0.0297575374257,0.0297064076363,0.0297575374257,0.0298597970045,0.0301154459515,0.0301665757409,0.0304222246878,0.0302177055302,0.030575614056,0.0312914311075,0.0311380417393,0.0313936906862,0.0311891715287,0.0319049885802,0.0314448204756,0.0310869119499,0.0311891715287,0.0312403013181,0.0312403013181,0.0309846523711,0.0310357821605,0.031495950265,0.0309846523711,0.0308312630029,0.0309335225817,0.0313425608969,0.0311380417393,0.0318027290014,0.0319049885802,0.0323140268953,0.0323651566847,0.0323651566847,0.0327741949998,0.0325696758422,0.0324674162635,0.0330809737362,0.032927584368,0.0332854928937,0.0339501801558,0.0340524397346,0.0343592184709,0.0348193865755,0.0347682567861,0.0343080886816,0.0345637376285,0.0349727759436,0.0347682567861,0.0345637376285,0.035023905733,0.0356885929951,0.0355863334163,0.0355352036269,0.0356374632057,0.0360465015209,0.0365577994148,0.0360976313102,0.0373247462556,0.0372224866769,0.0375803952026,0.0376826547814,0.0383984718329,0.0381939526753,0.0382962122541,0.0381939526753,0.0387563803586,0.038807510148,0.0396255867782,0.0395744569889,0.0397789761464,0.0395233271995,0.0396767165676,0.0399323655146,0.0391142888843,0.0390120293056,0.0384496016222,0.0386541207798,0.0379894335177,0.0378871739389,0.0378871739389,0.037375876045,0.0378360441496,0.037631524992,0.0372224866769,0.037375876045,0.0381939526753,0.0387563803586,0.0389608995162,0.0387052505692,0.0386541207798,0.0399323655146,0.0391142888843,0.0395233271995,0.0391654186737,0.0392676782525,0.0388586399374,0.0392676782525,0.0395233271995,0.0391654186737,0.0394721974101,0.039727846357,0.0391142888843,0.0391654186737,0.0394210676207,0.0400346250934,0.0403925336191,0.0409549613024,0.0415173889857,0.042079816669,0.0432046720356,0.0433069316144,0.0441250082447,0.044687435928,0.0448408252962,0.0455055125582,0.0460679402415,0.0466303679249,0.0470905360294,0.0469882764506,0.0470905360294,0.0476018339233,0.0477040935021,0.0484710403429,0.0490845978156,0.0486244297111,0.0489312084475,0.0495958957095,0.050311712761,0.0513854383382,0.0518967362322,0.0516922170746,0.051743346864,0.0519478660215,0.0519478660215,0.0519478660215,0.0535840192821,0.0543509661229,0.0539930575972,0.0536862788608,0.0545554852805,0.0538907980184,0.0545554852805,0.0548622640168,0.0543509661229,0.0542998363335,0.0544020959123,0.0542998363335,0.0551179129638,0.0554246917002,0.0555780810683,0.0556292108577,0.0562427683304,0.0568563258031,0.0577766620122,0.0579300513803,0.0588503875894,0.0592594259045,0.0589526471682,0.0594639450621,0.0595662046408,0.0600263727454,0.0603842812711,0.0597707237984,0.0599241131666,0.0605376706393,0.0617136557953,0.0626339920043,0.0630941601088,0.0636565877921,0.0631964196876,0.0630941601088,0.0647303133694,0.0665709857875,0.0660596878935,0.0675935815753,0.0682582688374,0.0691786050464,0.0699455518873,0.0712749264115,0.0722975221993,0.0728599498826,0.0727065605144,0.0736780265128,0.0742404541961,0.0748540116688,0.0753653095628,0.0760811266142,0.0754675691415,0.0758766074567,0.0765412947188,0.0771548521914,0.0779217990323,0.0781774479793,0.0793534331353,0.0794045629247,0.0796090820822,0.0810918459746,0.0817565332367,0.0820121821836,0.0828813886033,0.0843130227062,0.0846198014426,0.0854890078622,0.0865116036501,0.0875341994379,0.0880966271212,0.0873296802803,0.0883522760681,0.0887613143833,0.0886590548045,0.0888635739621,0.0906019868014,0.0912666740634,0.0912666740634,0.091726842168,0.0924937890088,0.0924426592194,0.0935163847967,0.0940276826906,0.0948457593208,0.0955104465829,0.0977601573161,0.0988338828934,0.0992429212085,0.0986804935252,0.0993451807873,0.100163257418,0.0999076084706,0.100674555311,0.102617487308,0.10328217457,0.104049121411,0.105480755514,0.105736404461,0.105940923619,0.106554481091,0.107065778985,0.106912389617,0.107883855616,0.108088374773,0.108292893931,0.108548542878,0.109571138666,0.112076498346,0.11258779624,0.11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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("24-organelles-nucleus-merged/SEPALLATA3-ChIPSeq_wt_2-GSM364940.36mers.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=235"),bty="n")
dev.off()