condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep1-GSM532325.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep1-GSM532325.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-chip_rep2-GSM532326.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-chip_rep2-GSM532326.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep1-GSM532327.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep1-GSM532327.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === APETALA2-ctrl_rep2-GSM532328.36mers.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes APETALA2-ctrl_rep2-GSM532328.36mers.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &