# R script for Peak Model
#  -- generated by MACS
p <- c(0.0145786693105,0.0151027391223,0.0155315235138,0.0173419465001,0.0181995152831,0.0192952976169,0.019914652849,0.021058077893,0.0214868622845,0.0222967883573,0.0232496425606,0.0242977821842,0.0250600655468,0.0259176343298,0.0260605624603,0.026536989562,0.0271087020839,0.0272039875043,0.0281568417076,0.0281568417076,0.0288238396499,0.0286332688092,0.0287761969397,0.0289191250702,0.0285856260991,0.0282044844177,0.0282997698381,0.0286809115194,0.0290620532007,0.0289667677804,0.0285856260991,0.02887148236,0.0282044844177,0.0286809115194,0.0277280573161,0.0274898437653,0.0274422010551,0.0279662708669,0.0278233427364,0.0267752031128,0.0260129197501,0.0254412072282,0.0256317780688,0.0250124228367,0.025393564518,0.0253459218078,0.0252506363875,0.0252029936773,0.0252029936773,0.0251553509672,0.0261558478806,0.0270134166636,0.0270610593738,0.0280139135771,0.0275851291856,0.0276804146059,0.0272039875043,0.0276804146059,0.0274898437653,0.0272992729246,0.0271563447941,0.0274422010551,0.0272516302144,0.0272039875043,0.0269181312433,0.0267275604026,0.0268228458229,0.0266799176925,0.0269181312433,0.0262034905908,0.0272039875043,0.0274898437653,0.0273469156348,0.0275374864754,0.0282997698381,0.0281091989974,0.0284426979686,0.0289667677804,0.0290144104905,0.0290144104905,0.0288238396499,0.0282044844177,0.0281091989974,0.0278233427364,0.0280139135771,0.0283950552584,0.0279662708669,0.0278233427364,0.0282997698381,0.0279662708669,0.0275851291856,0.0276804146059,0.0277280573161,0.0279662708669,0.0286809115194,0.0288238396499,0.0292049813312,0.0296337657227,0.030014907404,0.029729051143,0.0303484063752,0.0313012605785,0.0313965459988,0.0319206158106,0.0322064720716,0.0323970429123,0.0319206158106,0.0321111866513,0.0318729731004,0.0317776876801,0.0313012605785,0.0317776876801,0.0329687554342,0.0325399710428,0.0323494002021,0.0329687554342,0.0331116835647,0.0339692523477,0.0336357533766,0.0334928252461,0.0336357533766,0.0330163981444,0.0333975398257,0.0328258273038,0.0323017574919,0.0324923283326,0.0326352564631,0.0321588293614,0.03173004497,0.0314918314191,0.0306342626362,0.0308248334768,0.0299672646938,0.0299196219837,0.030014907404,0.030014907404,0.0298719792735,0.0288238396499,0.0290620532007,0.0286332688092,0.0287761969397,0.029157338621,0.0290620532007,0.02887148236,0.0284426979686,0.0279186281567,0.0282044844177,0.0286332688092,0.0279186281567,0.0278709854466,0.0279186281567,0.0280139135771,0.0280139135771,0.0277757000263,0.0278709854466,0.0283950552584,0.0275851291856,0.0276804146059,0.0275851291856,0.0285856260991,0.0285856260991,0.0279662708669,0.0282997698381,0.0282044844177,0.0289191250702,0.02887148236,0.0292049813312,0.0287761969397,0.0293002667515,0.0288238396499,0.0281568417076,0.0279186281567,0.0274898437653,0.0278233427364,0.0273469156348,0.0275374864754,0.0265846322721,0.0269657739534,0.0270610593738,0.0269657739534,0.0272039875043,0.0275851291856,0.0271563447941,0.0269657739534,0.0273945583449,0.0276804146059,0.0279186281567,0.0272039875043,0.0271563447941,0.0277280573161,0.0275851291856,0.0270610593738,0.0269657739534,0.0270134166636,0.0262987760111,0.0251553509672,0.0254888499383,0.025393564518,0.0252982790977,0.0261558478806,0.0261558478806,0.0267752031128,0.0264893468518,0.0269657739534,0.0271563447941,0.0269657739534,0.0272039875043,0.0279186281567,0.0277280573161,0.0275374864754,0.0276327718958,0.0277757000263,0.0281568417076,0.0281568417076,0.0278709854466,0.0275374864754,0.0281091989974,0.0275374864754,0.0279186281567,0.0274422010551,0.0273945583449,0.0274898437653,0.0275851291856,0.0276804146059,0.0280139135771,0.0274898437653,0.0279186281567,0.0280615562872,0.0293479094617,0.0293479094617,0.0292526240414,0.0290620532007,0.0289191250702,0.0296337657227,0.0293479094617,0.0290144104905,0.0286809115194,0.0275851291856,0.0283950552584,0.0281091989974,0.0284903406787,0.0286809115194,0.0283950552584,0.0283950552584,0.0291096959109,0.0299672646938,0.030300763665,0.0303960490853,0.0300625501142,0.0299196219837,0.0298719792735,0.0313489032886,0.0309201188971,0.0310154043175,0.0316824022598,0.0318729731004,0.0312536178683,0.0315871168395,0.0315871168395,0.0320159012309,0.0313965459988,0.0319206158106,0.0319206158106,0.0323970429123,0.0314918314191,0.0311106897378,0.0323017574919,0.0327781845936,0.0337310387969,0.0341598231884,0.0343027513189,0.0347791784205,0.0349697492612,0.0359226034645,0.0353985336527,0.0362561024356,0.0368754576678,0.0369707430881,0.0375900983203,0.0374471701898,0.0367801722475,0.0363990305661,0.0365896014068,0.0367325295373,0.0372089566389,0.0373995274796,0.0378283118711,0.0369231003779,0.0370660285084,0.0367325295373,0.0361608170153,0.0361131743051,0.0369231003779,0.0367801722475,0.0367801722475,0.0374948128999,0.0383047389727,0.0379235972914,0.0376377410304,0.0384953098134,0.0391146650455,0.0404486609302,0.0405915890607,0.0412109442928,0.0405439463505,0.040686874481,0.0404486609302,0.0408774453217,0.040972730742,0.040972730742,0.0418779422351,0.041258587003,0.04040101822,0.0397816629879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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("19-organelles-nucleus-merged/LEAFY-samp-rep1-GSM605656.36mers.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=144"),bty="n")
dev.off()