condor_exec.exe: /woldlab/castor/data03/home/hamrhein/bin/bowtie: Stale NFS file handle
[sam_header_read2] 7 sequences loaded.
[sam_read1] reference '' is recognized as '*'.
[main_samview] truncated file.
Traceback (most recent call last):
  File "/woldlab/castor/data00/home/georgi/code/trimfastq.py", line 226, in <module>
    run()
  File "/woldlab/castor/data00/home/georgi/code/trimfastq.py", line 209, in run
    print sequence.strip()
IOError: [Errno 32] Broken pipe
2013-12-13T16:48:26 fastq-dump.2.3.1 err: unknown while writing file within file system module - unknown system error 'Broken pipe(32)'
2013-12-13T16:48:26 fastq-dump.2.3.1 err: unknown while writing file within file system module - failed rev-GSM657970.sra
2013-12-13T16:48:26 fastq-dump.2.3.1 err: param invalid while writing file within file system module - Bad position for STDIO write 0 instead of 73728
Written 0 spots total

=============================================================
An error occurred during processing.
A report was generated into the file 'ncbi_error_report.xml'.
If the problem persists, you may consider sending the file
to 'sra@ncbi.nlm.nih.gov' for assistance.
=============================================================