# R script for Peak Model
#  -- generated by MACS
p <- c(0.0416562165519,0.0438731252159,0.0460421524833,0.048235120449,0.0504227017576,0.0526132756535,0.0548457457714,0.0570632529529,0.0592364698425,0.0614360215003,0.0636236028089,0.0658087900476,0.0679682410357,0.0701516327221,0.0723290392339,0.0745100368505,0.0767245514447,0.078880411328,0.0789037535089,0.0788983668517,0.0788654483916,0.0788546750773,0.0788157714426,0.0788415076932,0.0788714335661,0.0788834039153,0.0788439017631,0.0788085892331,0.0788002099887,0.0787241982715,0.0786829005669,0.0786374132401,0.0786416028623,0.0786655435606,0.0786697331828,0.0786619524559,0.0786906812939,0.0786535732115,0.078667339113,0.0786876887066,0.0787122279223,0.0787110308874,0.0786829005669,0.0786715287352,0.0787433508302,0.0787331760334,0.0787194101318,0.078724796789,0.0787774663253,0.0787565182142,0.0787672915285,0.0788049981283,0.0787565182142,0.0787654959761,0.0787577152491,0.0787469419349,0.0787559196968,0.0787762692903,0.0788139758902,0.0787409567603,0.078724796789,0.0787397597254,0.0787565182142,0.0787690870808,0.078723599754,0.0787349715857,0.0787726781856,0.0788157714426,0.0788361210361,0.0788558721122,0.0788905861248,0.0788690394963,0.078859463217,0.0788935787121,0.0789330808643,0.0789145268231,0.0788941772295,0.0789151253406,0.0788600617344,0.0788187640298,0.0787295849286,0.0787517300746,0.0787840500173,0.0787672915285,0.0787218042017,0.0787583137666,0.0788139758902,0.07878105743,0.078824150687,0.0788708350487,0.0789139283057,0.0789414601087,0.0789659993245,0.0789959251974,0.0789677948769,0.0790360258671,0.0790408140067,0.0790330332798,0.0790420110416,0.0790874983684,0.0791389708698,0.0792030122378,0.0791754804348,0.0791874507839,0.079243711425,0.0792407188377,0.0792556817741,0.0792886002343,0.0793281023865,0.0793245112818,0.0792766298851,0.0792981765136,0.0793592252943,0.0793807719228,0.0794364340464,0.0794741406462,0.0795567360554,0.0796040189346,0.0796273611155,0.0796536958836,0.0796710528899,0.0796548929185,0.0795866619283,0.0796183833536,0.0796297551853,0.0796495062614,0.0795788812014,0.0795459627412,0.0795752900966,0.0796112011441,0.0796788336168,0.0797332987055,0.0797584364387,0.0797907563815,0.0798069163528,0.079811105975,0.0798518051622,0.0798338496384,0.0798547977495,0.0798547977495,0.0798583888542,0.0798547977495,0.0798386377781,0.079804522283,0.0797859682418,0.0797733993752,0.0797745964101,0.0797853697243,0.0797775889974,0.0797566408864,0.0798057193179,0.0798745488256,0.0799092628381,0.0798960954541,0.0799224302222,0.0799721071712,0.0800217841202,0.0801067735992,0.0801648297926,0.0801301157801,0.0801408890943,0.0801468742689,0.0801857779037,0.0802426370622,0.0801791942116,0.0801911645608,0.0801845808688,0.0801726105196,0.0802246815384,0.0802378489225,0.0802570014812,0.080265979243,0.0802899199413,0.0802917154937,0.08034438503,0.0803808945949,0.0803802960775,0.080394061979,0.0803910693917,0.0804233893345,0.0804527166899,0.0805107728833,0.0805604498323,0.0805802009084,0.0805748142513,0.0805604498323,0.0805472824482,0.0805454868959,0.0805353120991,0.0804916203247,0.0804700736962,0.0804413448582,0.0804413448582,0.0804377537534,0.0804503226201,0.0804958099469,0.0805538661403,0.0805819964608,0.0806322719273,0.0806334689622,0.0807034955048,0.0807011014349,0.0807435961744,0.0807465887617,0.0807418006221,0.0807813027743,0.0807974627456,0.0808585115263,0.0808076375424,0.0808615041136,0.0808860433294,0.080892028504,0.0809004077484,0.0809476906276,0.0810458474907,0.0811146769983,0.0812074472043,0.0812415626994,0.0813241581086,0.0814211179368,0.0814546349144,0.0815928924472,0.0816772834087,0.0817293544276,0.0817718491671,0.0819035230078,0.0820052709757,0.0821267700196,0.0822063728415,0.0822847786285,0.0823452288917,0.0824775012499,0.0825253826466,0.0825936136368,0.0826947630872,0.0828024962296,0.0828497791088,0.0829383596925,0.0829736722225,0.0830568661492,0.0831610081869,0.0832190643803,0.0833567233956,0.0834590698809,0.0836482013976,0.0837385775337,0.0838648647173,0.0839737948947,0.0840875132117,0.0842024285636,0.0842227781572,0.0843185409504,0.084402931912,0.0844639806927,0.0845268250258,0.0845753049399,0.0847081758155,0.0847811949454,0.0848404481737,0.084885336983,0.0849625457351,0.0850319737602,0.0850678848077,0.0851037958552,0.0851828001596,0.0852516296673,0.0853360206288,0.0853527791177,0.0854198130729,0.0855239551106,0.0856005653452,0.0856963281385,0.0858471545379,0.085930946982,0.0860099512864,0.086073394137,0.0860985318702,0.0861984842857,0.0862212279491,0.0862583360315,0.0862691093457,0.086300830771,0.0863325521962,0.0864019802213,0.0864684156592,0.0865354496145,0.0866497664489,0.0866790938043,0.0866766997345,0.0867503173818,0.0868083735753,0.0868311172387,0.0868233365117,0.0868335113085,0.0868915675019,0.0869478281429,0.0869945125047,0.0870591523901,0.0871525211135,0.0872063876848,0.0872554661163,0.0873081356526,0.0873823518174,0.087451181325,0.087458962052,0.0874870923725,0.0874984642042,0.0875391633913,0.0875529292929,0.0875996136546,0.0877115364192,0.0877983214506,0.0878934857264,0.0879730885483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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("12-organelles-nucleus-merged/PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=241"),bty="n")
dev.off()