# R script for Peak Model
#  -- generated by MACS
p <- c(0.0442727416784,0.0463818901098,0.048668184866,0.0508077803219,0.0530913071669,0.0554467997063,0.0578078280684,0.0600858190907,0.0623970250489,0.0646556406919,0.0669087205122,0.0691368891306,0.0714785421134,0.0737537652244,0.076034524158,0.078276532333,0.0805130046854,0.0828214427323,0.0827605486831,0.0827328695698,0.0827716203284,0.0826692076093,0.0825667948902,0.0826636717866,0.0825612590675,0.0823619694519,0.0820824104079,0.0820464275606,0.0819661581322,0.0819384790189,0.0818111550978,0.0815509714331,0.0816755274428,0.0814817736499,0.0813793609308,0.0812465011871,0.080983549611,0.0810665869508,0.0808922085372,0.0808423861333,0.0808672973353,0.0807482771482,0.0806569360744,0.0804963972174,0.0803275546265,0.0802334456413,0.0802777322226,0.0802362135527,0.080103353809,0.0800396918484,0.0799040641934,0.0797767402723,0.0797629007157,0.0795663790115,0.0794556625584,0.0793947685092,0.0794196797111,0.0792453012975,0.0793836968639,0.0794667342037,0.0796162014154,0.0795663790115,0.079638344706,0.0796272730607,0.0799787977992,0.0800839784297,0.0798514738782,0.0798127231196,0.0796715596419,0.0796438805286,0.0799123679274,0.0798902246368,0.0799871015332,0.0800729067844,0.0800756746957,0.0804465748135,0.0805130046854,0.0806181853158,0.0805130046854,0.0805905062025,0.0805683629119,0.0807205980349,0.0806846151877,0.0808783689806,0.0808756010692,0.0807372055029,0.0807205980349,0.0807012226556,0.0807205980349,0.0807510450595,0.0806652398084,0.0806264890498,0.0807593487935,0.0808589936013,0.0807787241728,0.0805296121533,0.0803413941831,0.0804078240549,0.080518540508,0.080687383099,0.080382912853,0.0802445172866,0.0804355031682,0.0806818472763,0.080695686833,0.0806929189216,0.0804880934834,0.0804880934834,0.0803856807643,0.0802583568433,0.0804963972174,0.0802638926659,0.0800396918484,0.0800092448238,0.0802334456413,0.0802500531093,0.0804604143702,0.080366305385,0.080238981464,0.0800729067844,0.0802998755132,0.0803635374737,0.0807012226556,0.080823010754,0.0809697100544,0.0810831944188,0.0812022146059,0.0813738251081,0.081135784734,0.0809586384091,0.0810084608129,0.0812852519457,0.0814900773839,0.0815731147237,0.0818222267431,0.0817779401619,0.081905264083,0.0819689260435,0.0818941924377,0.0817945476299,0.0818554416791,0.0818858887037,0.0819827656001,0.0821626798364,0.0821073216098,0.0823675052746,0.0822983074914,0.0823841127426,0.0826110814714,0.0824311672351,0.0824560784371,0.0822678604668,0.0821239290778,0.0821599119251,0.0824145597672,0.0823730410973,0.082201430595,0.0822484850875,0.0819661581322,0.0820962499645,0.0819523185755,0.0818499058564,0.0818416021224,0.0818554416791,0.08175302896,0.0820270521814,0.0819024961716,0.0817917797185,0.0815454356104,0.0811579280246,0.0807759562615,0.0806514002517,0.0803884486757,0.0802666605773,0.0802057665281,0.0801753195035,0.0798929925481,0.0797379895138,0.0796632559079,0.079477805849,0.0795525394548,0.0794445909131,0.0794252155338,0.0792314617409,0.0789934213668,0.0792259259182,0.0792037826276,0.0792646766768,0.0792840520561,0.0792176221843,0.0791179773765,0.0790100288347,0.0788356504211,0.0789740459875,0.0789214556722,0.0788245787758,0.0788411862438,0.0789297594062,0.0789878855441,0.0788910086476,0.0790875303519,0.0789629743422,0.0790515475046,0.07902110048,0.0789408310515,0.0789934213668,0.0791456564897,0.0791290490218,0.0795110207849,0.0794473588244,0.0795525394548,0.0795995939474,0.079621737238,0.0796051297701,0.0796078976814,0.0795137886963,0.0793477140166,0.0792203900956,0.0790792266179,0.0790792266179,0.0792369975635,0.0791677997804,0.0788550258004,0.0789712780761,0.0789297594062,0.0790183325687,0.0788301145984,0.0789463668742,0.0788744011797,0.0786114496036,0.0786778794755,0.0787526130813,0.0786612720075,0.0784702861259,0.0784149278994,0.0781658158799,0.077988669555,0.0780634031608,0.0781381367667,0.0780412598702,0.078115993476,0.0785256443525,0.0784564465693,0.0785754667563,0.0782793002443,0.0783235868256,0.0782405494858,0.0781381367667,0.0781879591705,0.0782101024612,0.078293139801,0.0783097472689,0.0785450197317,0.0784785898599,0.078589306313,0.0785616271997,0.0785533234657,0.0784841256825,0.0786225212489,0.0786557361848,0.0787664526379,0.0788273466871,0.0790653870613,0.0791318169331,0.0793034274354,0.0795220924302,0.0795442357209,0.0792757483221,0.0791428885784,0.079317266992,0.0791927109823,0.079469502115,0.0795691469228,0.0794418230018,0.0793394102827,0.079486109583,0.0794279834451,0.0791235131991,0.079029404214,0.0789685101648,0.0791677997804,0.0792895878788,0.0792923557901,0.0795165566076,0.0796770954646,0.0797767402723,0.0798320984989,0.0798902246368,0.0798874567254,0.0800729067844,0.0801005858976,0.0803496979171,0.0803856807643,0.0804161277889,0.0805794345572,0.0805932741139,0.0804188957003,0.080391216587,0.0805406837987,0.0806652398084,0.0808894406259,0.081152392202,0.0813876646648,0.0817253498467,0.0821543761024,0.0822650925555,0.0824920612843,0.0826083135601,0.0827716203284,0.0828684972248,0.0830207323478,0.0830179644365,0.0832117182294,0.0832366294313,0.0835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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("6-organelles-nucleus-merged/PIF3-P3M-ChIP-2-GSM958270.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=68"),bty="n")
dev.off()