condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-GFP-replicate-1-GSM1116506.unique.bam SAMstats-gSOC1-GFP-replicate-1-GSM1116506 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-GFP-replicate-2-GSM1116508.unique.bam SAMstats-gSOC1-GFP-replicate-2-GSM1116508 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-GFP-replicate-3-GSM1116510.unique.bam SAMstats-gSOC1-GFP-replicate-3-GSM1116510 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-negative-1-GSM1116505.unique.bam SAMstats-gSOC1-negative-1-GSM1116505 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-negative-2-GSM1116507.unique.bam SAMstats-gSOC1-negative-2-GSM1116507 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py gSOC1-negative-3-GSM1116509.unique.bam SAMstats-gSOC1-negative-3-GSM1116509 -bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.wig -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.minus.wig -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.plus.wig -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.wig -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.unique.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.unique.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast -uniqueBAM" &