condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-1-GSM1116506.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-1-GSM1116506.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-2-GSM1116508.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-2-GSM1116508.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-GFP-replicate-3-GSM1116510.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-GFP-replicate-3-GSM1116510.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-1-GSM1116505.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-1-GSM1116505.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-2-GSM1116507.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-2-GSM1116507.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === gSOC1-negative-3-GSM1116509.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes gSOC1-negative-3-GSM1116509.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &