# R script for Peak Model
#  -- generated by MACS
p <- c(0.010800417451,0.0112463062448,0.0115435654407,0.0119894542346,0.0127078306247,0.0135005218137,0.0141445834049,0.0145657005991,0.0151849905905,0.015655650984,0.0162501693758,0.0169190025666,0.0174887493587,0.0180584961509,0.0184796133451,0.0192227613348,0.0198172797266,0.0201145389225,0.0198668229259,0.0198172797266,0.0202879401201,0.0207586005136,0.0208329153126,0.0210310881099,0.0212540325068,0.0212540325068,0.0212292609071,0.0215512917027,0.0215017485034,0.021526520103,0.0214026621047,0.0213531189054,0.0209815449105,0.0209072301116,0.0208824585119,0.0211054029088,0.0213035757061,0.0215512917027,0.0219476372972,0.0222944396924,0.0222448964931,0.0219228656976,0.0219724088969,0.0224182976907,0.0224182976907,0.0228146432852,0.0228889580842,0.0227898716856,0.0233596184777,0.0232357604794,0.0237559640723,0.0237064208729,0.0237311924726,0.0240036800688,0.0242761676651,0.0243504824641,0.0241275380671,0.0237311924726,0.0238550504709,0.0239293652699,0.0240779948678,0.0240779948678,0.0239045936702,0.0239541368695,0.0236073344743,0.0232605320791,0.0235082480757,0.0235330196753,0.0239293652699,0.0244000256634,0.024424797263,0.0244000256634,0.0241523096668,0.0240036800688,0.0237807356719,0.0233596184777,0.0233843900774,0.0232605320791,0.0233843900774,0.0232605320791,0.0233843900774,0.0233843900774,0.023632106074,0.0235082480757,0.0227898716856,0.0232853036788,0.0228394148849,0.0225173840894,0.0223439828917,0.0224182976907,0.0223687544914,0.022542155689,0.0223935260911,0.0227651000859,0.0229137296839,0.0230375876822,0.0230128160825,0.0235330196753,0.0240284516685,0.0243009392647,0.0247468280586,0.0247963712579,0.0250193156548,0.0251927168524,0.0248211428576,0.0247220564589,0.0247468280586,0.0246972848593,0.0248706860569,0.0252174884521,0.025514747648,0.0257872352442,0.0257624636446,0.0263569820364,0.0262578956377,0.0262083524384,0.0262331240381,0.0262083524384,0.0262331240381,0.026456068435,0.0264312968354,0.0261340376395,0.026456068435,0.0266542412323,0.0268771856292,0.027397389222,0.0272239880244,0.0269515004282,0.0270505868268,0.0267780992306,0.0267037844316,0.0270258152272,0.0273478460227,0.0270505868268,0.0270010436275,0.026530383234,0.0265056116343,0.026530383234,0.0260844944401,0.0262083524384,0.0267780992306,0.0272735312237,0.0272487596241,0.02754601882,0.0277441916172,0.027471704021,0.0276451052186,0.0280662224128,0.0278432780159,0.0276203336189,0.02754601882,0.0277689632169,0.0277689632169,0.0276451052186,0.0275212472203,0.02754601882,0.0278928212152,0.0284377964077,0.0282396236104,0.0282148520107,0.028413024808,0.0281653088114,0.0284377964077,0.0290075431998,0.0292800307961,0.029502975193,0.0301718083837,0.0296516047909,0.029502975193,0.0294782035933,0.0297259195899,0.0297754627892,0.0301222651844,0.030369981181,0.0310883575711,0.0310388143718,0.0310140427721,0.0307167835762,0.0311874439697,0.0311379007704,0.0313608451673,0.0319553635591,0.0323021659544,0.0321287647568,0.0324507955523,0.0328471411468,0.0325746535506,0.0322773943547,0.0324260239527,0.0330205423444,0.033268258341,0.0335159743376,0.0338380051332,0.0331196287431,0.0332930299407,0.0335902891366,0.0339123199321,0.0339618631315,0.0340609495301,0.0338132335335,0.0338132335335,0.0345068383239,0.0340857211298,0.0343086655267,0.0340114063308,0.0345068383239,0.0342591223274,0.0347297827209,0.0351013567157,0.0353243011127,0.0346554679219,0.0349774987175,0.0350270419168,0.0349031839185,0.0346554679219,0.0348536407192,0.0345068383239,0.0339123199321,0.0332434867414,0.0331691719424,0.0329957707448,0.0329709991451,0.0336398323359,0.0341352643291,0.0345316099236,0.0344572951246,0.0340857211298,0.0341104927294,0.0340609495301,0.0348288691195,0.0351508999151,0.0354729307106,0.0352004431144,0.0351013567157,0.0353243011127,0.0360674491024,0.0359683627038,0.035448159111,0.0358445047055,0.0368353686918,0.0378014610785,0.0375537450819,0.0375042018826,0.0379996338758,0.0380491770751,0.0381730350734,0.0388418682641,0.0394116150563,0.0399318186491,0.0402786210443,0.040154763046,0.0406501950392,0.0411951702317,0.0422851206166,0.0427062378108,0.0431768982043,0.0439943609931,0.0443163917886,0.0441182189913,0.0441925337903,0.044291620189,0.0444154781872,0.045084311378,0.0455054285722,0.0456292865705,0.0457036013695,0.0453815705739,0.0457283729691,0.0467192369555,0.0469917245517,0.0475614713438,0.0480321317373,0.0492211685209,0.0494441129179,0.0498156869127,0.0498404585124,0.0496918289145,0.0506083781018,0.0514506124902,0.0516487852875,0.0516735568871,0.051970816083,0.0523423900779,0.0527139640728,0.0527139640728,0.0531350812669,0.0542498032516,0.0543241180505,0.0549186364423,0.0544727476485,0.0561819880249,0.0567269632174,0.0568755928153,0.0573710248085,0.0586096047914,0.0595509255784,0.0603188451678,0.060739962362,0.0618546843467,0.0626226039361,0.0632666655272,0.0635639247231,0.0640345851166,0.0645052455101,0.0646043319087,0.0654465662971,0.065743825493,0.0665117450824,0.0664374302834,0.0671062634742,0.0670071770756,0.0676016954674,0.0691623062458,0.0695586518404,0.070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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("5-organelles-nucleus-merged/gSOC1-GFP-replicate-2-GSM1116508.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=152"),bty="n")
dev.off()