condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chrM.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chrM.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chrM.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chloroplast.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chloroplast.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep1-GSM820411.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_svp_SVP-GFP_rep2-GSM820412.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep1-GSM820415.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-Inflorescence_wt-col_rep2-GSM820416.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep1-GSM820413.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.bam /woldlab/castor/data00/home/georgi/genomes/TAIR10/TAIR10.chrom.sizes SHORT_VEGETATIVE_PHASE-seedling_svp_SVP-GFP_rep2-GSM820414.chloroplast.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chloroplast" &