Cluster #0, n=40
-3	.......AAAAGGAAA	41	3	-10.5	24/24
-2	........AAAGGAAAG	22	1	-7.0	11/11
-6	....CAAAAAAGG	22	1	-7.0	22/22
-3	.......AAATGGAAA	28	3	-6.7	18/18
-7	...CCAAAAAAG	24	2	-6.5	22/22
-9	.TACCAAAAA	20	1	-6.4	14/14
-2	........AAAGGAAAA	16	1	-5.2	8/8
-8	..ACCAAAAAT	14	0	-5.2	10/10
-4	......AAAAAGGAA	26	5	-4.8	17/17
-6	....CAAAAATAG	12	0	-4.5	11/11
-7	...CCAAAAATA	17	2	-4.5	11/11
-6	....CAAATATGG	11	0	-4.2	6/6
-10	TTACCAAAA	16	2	-4.2	10/10
-6	....CAAAAATGG	18	3	-4.0	13/13
0	..........AGGAAAGTA	10	0	-3.9	6/6
-6	....CCAAAATAG	10	0	-3.9	4/7
-4	......AAAAGGGAA	11	1	-3.6	4/7
-7	...CTAAAAATG	9	0	-3.6	6/6
-4	......AAAGAGGAA	14	2	-3.6	10/10
-5	.....AAAAAAGGA	18	4	-3.4	15/16
-3	.......AAAGGGAAA	13	2	-3.3	6/7
-3	.......AAATGGCAA	13	2	-3.3	7/7
-7	...CCAAAAATG	13	2	-3.3	11/11
-6	....CAAAAGAGG	10	1	-3.3	11/11
-4	......AATATGGAA	8	0	-3.3	4/4
-9	.AGCCAAAAA	8	0	-3.3	4/5
-1	.........ATGGAAATT	8	0	-3.3	4/5
-6	....CTAAAATGG	8	0	-3.3	6/6
-10	TTTCCTAAA	8	0	-3.3	5/5
-4	......AAAATGGAA	17	4	-3.2	10/10
-8	..GCCAAAAAA	12	2	-3.1	9/9
-10	TTGCCAAAA	12	2	-3.1	7/8
-5	.....AAAAAGGGA	9	1	-3.0	4/7
-4	......AAAATGGCA	9	1	-3.0	5/5
-5	.....AAATATGGA	9	1	-3.0	5/5
-5	.....ATAAATGGA	9	1	-3.0	7/7
-6	....TAAAAATGG	9	1	-3.0	6/7
-4	......AAAAAAGCC	7	0	-3.0	3/4
-1	.........ATGGAAACT	7	0	-3.0	3/5
-7	...CCAAAAGTG	7	0	-3.0	6/6
Cluster #1, n=3
-2	...GGGAAAGAA	9	0	-3.6	8/8
-5	TTTGGGAAA	10	1	-3.3	9/9
-4	.TTGGGAAAG	8	0	-3.3	8/8
Cluster #2, n=9
-1	...TTTCCTTTT	41	3	-10.5	36/37
-2	..CTTTCCTTT	22	1	-7.0	18/19
-2	..TTTTCCTTT	16	1	-5.2	17/17
-3	.ACTTTCCTT	14	0	-5.2	8/8
0	....TTCCTTTTT	26	5	-4.8	21/21
-1	...TTCCCTTTT	11	1	-3.6	6/6
1	.....TCCTTTTTT	18	4	-3.4	10/10
-2	..TTTCCCTTT	13	2	-3.3	11/12
-4	TTCTTTCCT	12	2	-3.1	6/6