# R script for Peak Model
#  -- generated by MACS
p <- c(0.0417941922048,0.0442034135187,0.0463807311768,0.0484420970068,0.0505807640556,0.0528998006144,0.0550255841267,0.0573832712948,0.0597796090723,0.0621888303862,0.0641728949976,0.0664532809472,0.0686048315323,0.0710527034555,0.0732944387957,0.0754588729173,0.0775202387474,0.0798521588427,0.0799423435977,0.0800711789621,0.0800711789621,0.0799036929884,0.0801871307901,0.0801098295714,0.0800325283528,0.079980994207,0.079890809452,0.0801871307901,0.0803675003002,0.080509219201,0.0802644320087,0.0801742472536,0.0800454118892,0.0801613637172,0.0800454118892,0.0804319179824,0.0806638216383,0.0806380545654,0.0805994039561,0.0809086088306,0.0809987935856,0.0809086088306,0.0808570746848,0.0804834521281,0.0800196448164,0.0798006246969,0.0801742472536,0.0801227131079,0.080303082618,0.079774857624,0.0793754679945,0.0793754679945,0.0797104399418,0.0796460222597,0.0794398856767,0.0792466326301,0.0795300704317,0.0796460222597,0.079774857624,0.0796331387232,0.0798779259155,0.079774857624,0.0796331387232,0.0794012350673,0.0789374277556,0.0786539899539,0.078538038126,0.078215949715,0.0782803673972,0.0781128814235,0.0783061344701,0.0780871143507,0.0784736204438,0.0781128814235,0.0783061344701,0.0784478533709,0.078215949715,0.0780999978871,0.0780742308142,0.0779969295956,0.0784607369074,0.0787055240997,0.0786539899539,0.0786668734904,0.0783834356887,0.0789245442191,0.0791693314115,0.078950311292,0.0789889619013,0.0786797570268,0.0784478533709,0.0786282228811,0.0783061344701,0.0783447850794,0.0784865039802,0.0783963192252,0.0782674838608,0.0781515320329,0.0782288332515,0.078422086298,0.0786411064175,0.0788343594641,0.0793754679945,0.0796460222597,0.0796975564054,0.0798006246969,0.0802000143265,0.0805736368832,0.0800196448164,0.0802257813994,0.0798392753062,0.079684672869,0.0802386649358,0.0803675003002,0.0806638216383,0.0811920466322,0.0812693478508,0.0814110667517,0.0816687374804,0.0815656691889,0.0816816210169,0.0815012515067,0.0817331551626,0.0824030990574,0.0822871472294,0.082596352104,0.0829957417335,0.0831245770979,0.0830730429522,0.0829828581971,0.082480400276,0.0826607697861,0.0826350027133,0.082686536859,0.0825190508853,0.0825319344218,0.0826607697861,0.0823000307659,0.0815012515067,0.0813208819966,0.0815141350432,0.0815270185796,0.081243580778,0.0809987935856,0.081243580778,0.0814883679703,0.0819521752821,0.0822098460108,0.0819006411363,0.0816300868711,0.081243580778,0.0807282393205,0.0801742472536,0.0794270021402,0.0788214759276,0.0783447850794,0.0782803673972,0.0778294436219,0.0776233070389,0.0770821985085,0.0768374113162,0.0765926241239,0.0763349533951,0.0756134753546,0.0753944552351,0.0750594832877,0.0751625515792,0.0746987442675,0.07418340281,0.0735907601338,0.0737711296439,0.0734232741601,0.0729594668483,0.0726116113645,0.0728563985568,0.0728048644111,0.0720318522248,0.0716711132045,0.0715165107673,0.0712330729657,0.0706146632166,0.0702796912692,0.0699447193219,0.0694680284736,0.0689526870161,0.0688882693339,0.0687852010424,0.0689526870161,0.068978454089,0.0693649601821,0.069712815666,0.069596863838,0.0698545345668,0.0699576028583,0.0697772333482,0.069184590672,0.0689398034797,0.0688753857975,0.0685404138501,0.0686177150687,0.0684888797044,0.0686950162874,0.0683986949493,0.0686692492145,0.0689398034797,0.0693778437186,0.0689140364068,0.0687465504331,0.0686950162874,0.0691717071356,0.0690042211619,0.0687336668967,0.068772317506,0.0687465504331,0.0683729278764,0.0679864217833,0.0682183254392,0.0679091205646,0.0678060522731,0.0673937791071,0.0678189358096,0.0677545181274,0.0678704699553,0.0677029839816,0.067831819346,0.0672907108156,0.0665563492387,0.0669042047225,0.066272911437,0.0661440760726,0.0659121724168,0.0662857949735,0.066594999848,0.0665434657022,0.0664017468014,0.0670201565504,0.0672520602063,0.0670330400869,0.0671361083784,0.0668397870403,0.0669042047225,0.0666336504573,0.0669428553318,0.0673422449614,0.0674968473986,0.0672649437427,0.0672778272792,0.0674839638622,0.0675226144715,0.0673293614249,0.0674581967893,0.0678189358096,0.0677802852003,0.0677029839816,0.0674968473986,0.067625682763,0.0677029839816,0.067625682763,0.0676514498359,0.0674710803258,0.0672391766699,0.067625682763,0.0684244620222,0.0683729278764,0.0688882693339,0.0690299882348,0.0688496187246,0.0686563656781,0.0680637230019,0.0681152571477,0.0686048315323,0.068037955929,0.0682569760485,0.0685532973865,0.0686563656781,0.0689655705526,0.0690944059169,0.0695453296923,0.0694551449372,0.0696097473745,0.069712815666,0.0698158839575,0.069803000421,0.0700606711498,0.0705244784616,0.0709754022369,0.0710527034555,0.0713490247936,0.071271723575,0.0718514827147,0.071774181496,0.072096269907,0.0717870650325,0.0717355308867,0.0720318522248,0.0724054747815,0.072624494901,0.0723152900264,0.0718514827147,0.0722895229536,0.0718385991782,0.0719159003969,0.0725343101459,0.0730238845305,0.0735778765974,0.0734876918423,0.0733846235508,0.0733846235508,0.0737067119617,0.0733459729415,0.0732042540407,0.0734103906237,0.07324290465,0.0732557881864,0.0735521095245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m <- 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s <- 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x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf("1-organelles-nucleus-merged/DP104-1-FLMdelta-GFP-GSM1167543.36mers.macs2.0.9_model.pdf",height=6,width=6)
plot(x,p,type="l",col=c("red"),main="Peak Model",xlab="Distance to the middle",ylab="Percentage")
lines(x,m,col=c("blue"))
lines(x,s,col=c("black"))
abline(v=median(x[p==max(p)]),lty=2,col=c("red"))
abline(v=median(x[m==max(m)]),lty=2,col=c("blue"))
abline(v=median(x[s==max(s)]),lty=2,col=c("black"))
legend("topleft",c("forward tags","reverse tags","shifted tags"),lty=c(1,1,1),col=c("red","blue","black"))
legend("right",c("d=101"),bty="n")
dev.off()