cd /N/dc2/projects/marinovg/reviews/15._2015_BMC_Bioinformatics_ChIP-seq_read_design/2016-02-10-CC-test; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-end1.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-end1.QC
cd /N/dc2/projects/marinovg/reviews/15._2015_BMC_Bioinformatics_ChIP-seq_read_design/2016-02-10-CC-test; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-end1+2.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-end1+2.QC
cd /N/dc2/projects/marinovg/reviews/15._2015_BMC_Bioinformatics_ChIP-seq_read_design/2016-02-10-CC-test; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-PE.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=GM12878-GTF2F1-ENCFF002ELJ-Rep2.36mers-PE.QC